Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_025414.1
Length=178171
Score E
Sequences producing significant alignments: (Bits) Value
seq449735 215 6e-51
seq506238 147 2e-30
seq508109 131 2e-25
seq128994 111 2e-19
seq522862 93.3 5e-14
>seq449735
Length=3187
Score = 215 bits (238), Expect = 6e-51
Identities = 396/575 (69%), Gaps = 14/575 (2%)
Strand=Plus/Plus
Query 41178 TACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGCGTAG 41237
|||||||||| |||||||| ||||| ||||| || || || |||||| | || |||
Sbjct 35 TACCTACGCCAATTATGGCAGGTGTTCGTACGCCAACACGCCAGTTTAGCTCGTGTGTAT 94
Query 41238 TGATTGAATCAGGTGATTCCCTGGGTTCTCTGAATGCTGTAACCTCTGCGATCGTGAAGT 41297
| || || | || || ||| | ||| | || || | ||||| || || || |
Sbjct 95 TAATAGAGTGTGGCGACAGCCTTGATTCAATTAACGCCACCTCGTCTGCAATTGTTAAAT 154
Query 41298 ATATTTCACAACGTGCTGGTATCGGTGTTAATGCTGGACACATTCGCGCAATGGGTTCTA 41357
| | || |||||||| || || || |||| || || | |||||| ||| |||||
Sbjct 155 ACGTATCGCAACGTGCCGGCATTGGCATTAACGCAGGTCGCATTCGTGCACTGGGTAGCC 214
Query 41358 AAATCCGTGGTGGTGAAGCAGTAC-ATACAGGCGTGATCCCGTTCTGGAAACATATTCAG 41416
| || || ||| ||||| |||| |||| || || || || | || || ||||
Sbjct 215 ACATTCGCAATGGCGAAGC-GTACCATACGGGTTGTATTCCTTTTTATAAGCACTTTCAA 273
Query 41417 ACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACGTTGTATTAT 41476
|||||||||||| |||||| ||||| || || ||||| || || ||||| |||| ||
Sbjct 274 ACAGCGGTTAAAAGCTGTTCGCAAGGCGGTGTACGTGGCGGCGCAGCAACCTTGTTCTAC 333
Query 41477 CCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTGTTGAG 41536
||| | |||||||| ||||| ||||||||| | || || ||||| ||| || |||||
Sbjct 334 CCGCTTTGGCATTTAGAAGTAGAAAACCTGTTAGTACTTAAAAATAACCGCGGGGTTGAT 393
Query 41537 AATAACCGCATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTTGATGTATAAGCGT 41596
| |||||| | ||||| | ||||| ||||| ||| |||| | | ||||| ||||
Sbjct 394 GACAACCGCGTGCGTCATTTAGATTACGGCGTACAGTTTAATAAACTAATGTACTCGCGT 453
Query 41597 TTAATCAATAACGATTACATCACACTGTTCAGCC---CTGACGTTGCAAATGATCGCCTG 41653
||||| || |||| ||||| || |||| |||| |||| || || ||||
Sbjct 454 TTAATTAAAGACGACTACATTACCTTGTTTAGCCCCTCTGATGTGCCA------GGCCTT 507
Query 41654 TATGATGCTTTCTATCAAGCTGATCAGACTGAGTTCGAAGAACTCTATACCAGTTTGGAA 41713
|| ||||| || | | ||| | |||| ||||| || | || ||| | | |||
Sbjct 508 TACGATGCATTTTTTGAAGACCA--AGAC-GAGTTTGACGCGCTTTATGTAAAATACGAA 564
Query 41714 AAAGACCCAACGGTACGCAAGAAACGCATTAAAGC 41748
||||| | | | || || ||||||||||||||
Sbjct 565 CAAGACGAATCAATTCGTAAAAAACGCATTAAAGC 599
>seq506238
Length=275
Score = 147 bits (162), Expect = 2e-30
Identities = 143/184 (78%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 51021 GAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGAAAGATGCTGTG 51080
|||||||| || || |||||||||||||| ||||||| ||||| || ||||||||||
Sbjct 221 GAAGGTGGTCAACATTTAAACGTGAATGTGTTACGTCGTGAAACATTGGAAGATGCTGTT 162
Query 51081 AAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGCTTT 51140
||||| ||||| || || ||||| ||||| || || || |||||||| ||||| || |||
Sbjct 161 AAACACCCTGAAAAATATCCACAATTAACTATTCGTGTATCAGGTTACGCAGTGCGTTTT 102
Query 51141 AATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACCTTTACGGAAAGCATG 51200
|| || | || ||||||||||||| ||||| | | | || ||||| |||| ||
Sbjct 101 AACTCATTAACACCAGAACAACAGCAAGACGTATTAACACGTACATTTACAGAAACATTG 42
Query 51201 TAAT 51204
||||
Sbjct 41 TAAT 38
>seq508109
Length=334
Score = 131 bits (144), Expect = 2e-25
Identities = 212/305 (70%), Gaps = 0/305 (0%)
Strand=Plus/Minus
Query 91831 CCGCGTCCCTTTTGTTTCAGTCCCAGGAACACGATCGCGTTTACTTGTTTCAGGCGCGGA 91890
||||| |||||||| |||| | | |||||| || || ||||| | | || ||
Sbjct 305 CCGCGACCCTTTTGCTTCAATGATAAGAACACAATAGCATTTACATTAGCTAATCGTGGG 246
Query 91891 TCGTTCTTCACAGCATCAACCACGTTAAACGCATCATCATAGGTTTTAGAGCTAACCATG 91950
|| | |||| ||| ||| || || ||||||| ||| || | || | |||
Sbjct 245 TCAGTTTTCATAGCTTCAGTTACAGTATACGCATCTTCAATAGTACGACCACTGATCATA 186
Query 91951 AAATGCAGGTTGATTTGTTGTTGTCCTGCTTCTGCCAGGTTTGCTACTGAGTCGAAAGCG 92010
|| || ||||||||||| | ||| || || | | | || || ||| || ||
Sbjct 185 AAGTGTAGGTTGATTTGCTTTTGACCAGCAGCGGTTAAACGCGCAACACTGTCAAACGCT 126
Query 92011 ACATCAAAGCCAGCGTGTTTATAAACCGATACCGCAACAGCCCCAGCAACCGCCGCTAAA 92070
|||||||| ||||||||||||||||| ||||| |||| ||| |||||||| | |||||
Sbjct 125 ACATCAAAACCAGCGTGTTTATAAACTGATACAGCAATAGCACCAGCAACTGATGCTAAT 66
Query 92071 CGCGCTGCAACGTCTTTAGAGACATCAGCAATGGTAAGGTTAGGTACAATACCTTTAGAA 92130
|| ||||| |||| || ||||||||||| || || || || | |||||||| |||
Sbjct 65 TTAGCAGCAACTTCTTCTGACACATCAGCAATTGTTAGATTTGGGATAATACCTTGTGAA 6
Query 92131 CGCGC 92135
|| ||
Sbjct 5 CGAGC 1
>seq128994
Length=861
Score = 111 bits (122), Expect = 2e-19
Identities = 204/297 (69%), Gaps = 4/297 (1%)
Strand=Plus/Minus
Query 43469 TATCTGTGTATGCACGCTGTCAACGCTCTGGAAGCGATTCGTTTCTATGTCTCGTTTACC 43528
||| |||| ||| | ||||| || | ||||||||||| ||||||||| ||| ||
Sbjct 472 TATTTGTGCATGATGTCAGTCAATGCCTTAGAAGCGATTCGCTTCTATGTCAGTTTTGCC 413
Query 43529 TTTACGTTCAACTTTGCCGAACAGGGCAAGATGGAAGGTAACGCAAAGATCATGCGTCTG 43588
| | |||| |||||| |||| | ||||||||||| || || || || || |
Sbjct 412 TGTTCGTTTGCCTTTGCTGAACGTCGTGTTATGGAAGGTAATGCTAAAATTATTCGCTTA 353
Query 43589 ATTGCCCGTGATGAAGCACTTCATCAGAAAGGTACTCAAAGCAAGATCCGACTCTG--GC 43646
||||||||||||||||| | || | || |||| ||| || | ||||| ||
Sbjct 352 ATTGCCCGTGATGAAGCCTTACACCTCAATAGTACACAA--CACATTTTAGCTCTGATGC 295
Query 43647 AGATGGGTAAAGATGACCCAGAAATGGCAGAAATCGCGTATCAGTACGAAGAAGAAGCAA 43706
|| |||||||| ||||||||||||| |||||| || | ||| | |||||||
Sbjct 294 AGGGTGGTAAAGACGACCCAGAAATGGGAGAAATTGCTGCTGAGTGTAAGCAAGAAGCGT 235
Query 43707 CACAGATTTTCCTCGAAGTTTACGAGCAGGAAAAAGAATGGGCTGAACACTTATTCA 43763
| | ||| || ||| || || |||||||||||||| | |||||||||
Sbjct 234 ATGACTTATTCGTCAAAGCGGCGGAACAAGAAAAAGAATGGGCCAAGTACTTATTCA 178
>seq522862
Length=256
Score = 93.3 bits (102), Expect = 5e-14
Identities = 123/168 (73%), Gaps = 12/168 (7%)
Strand=Plus/Plus
Query 43076 TCTAACCTGCAATATCAAACCCTGTTAGATACCATTCAGGGACGTGGCCCTAACCTGGCG 43135
|| |||||| |||||||||| || ||||| | || ||||| ||| | |||||| ||||
Sbjct 2 TCAAACCTGAAATATCAAACACTATTAGACTCGATACAGGGTCGTAGTCCTAACATGGCA 61
Query 43136 TTTCTCCCGATTG---CCT---CTGATGTTTCAATGGAAACGTGGATCGAAACATGGGCT 43189
|| || ||||| | ||| |||| ||| || || ||||||||||| ||| |
Sbjct 62 TTACTTCCGATCGTATCCTTACCTGA-GTTA-----GAGACATGGATCGAAACCTGGTCC 115
Query 43190 TTCAGTGAAACAATTCATAGCCGCAGTTATACACACATTCAGCGTAAC 43237
|||||||| || || || |||| || || ||||| |||| ||||||
Sbjct 116 TTCAGTGAGACTATCCACAGCCAGAGCTACACACATATTCTTCGTAAC 163
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 566274872129520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |