Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_025414.1 Length=178171 Score E Sequences producing significant alignments: (Bits) Value seq449735 215 6e-51 seq506238 147 2e-30 seq508109 131 2e-25 seq128994 111 2e-19 seq522862 93.3 5e-14 >seq449735 Length=3187 Score = 215 bits (238), Expect = 6e-51 Identities = 396/575 (69%), Gaps = 14/575 (2%) Strand=Plus/Plus Query 41178 TACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGCGTAG 41237 |||||||||| |||||||| ||||| ||||| || || || |||||| | || ||| Sbjct 35 TACCTACGCCAATTATGGCAGGTGTTCGTACGCCAACACGCCAGTTTAGCTCGTGTGTAT 94 Query 41238 TGATTGAATCAGGTGATTCCCTGGGTTCTCTGAATGCTGTAACCTCTGCGATCGTGAAGT 41297 | || || | || || ||| | ||| | || || | ||||| || || || | Sbjct 95 TAATAGAGTGTGGCGACAGCCTTGATTCAATTAACGCCACCTCGTCTGCAATTGTTAAAT 154 Query 41298 ATATTTCACAACGTGCTGGTATCGGTGTTAATGCTGGACACATTCGCGCAATGGGTTCTA 41357 | | || |||||||| || || || |||| || || | |||||| ||| ||||| Sbjct 155 ACGTATCGCAACGTGCCGGCATTGGCATTAACGCAGGTCGCATTCGTGCACTGGGTAGCC 214 Query 41358 AAATCCGTGGTGGTGAAGCAGTAC-ATACAGGCGTGATCCCGTTCTGGAAACATATTCAG 41416 | || || ||| ||||| |||| |||| || || || || | || || |||| Sbjct 215 ACATTCGCAATGGCGAAGC-GTACCATACGGGTTGTATTCCTTTTTATAAGCACTTTCAA 273 Query 41417 ACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACGTTGTATTAT 41476 |||||||||||| |||||| ||||| || || ||||| || || ||||| |||| || Sbjct 274 ACAGCGGTTAAAAGCTGTTCGCAAGGCGGTGTACGTGGCGGCGCAGCAACCTTGTTCTAC 333 Query 41477 CCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTGTTGAG 41536 ||| | |||||||| ||||| ||||||||| | || || ||||| ||| || ||||| Sbjct 334 CCGCTTTGGCATTTAGAAGTAGAAAACCTGTTAGTACTTAAAAATAACCGCGGGGTTGAT 393 Query 41537 AATAACCGCATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTTGATGTATAAGCGT 41596 | |||||| | ||||| | ||||| ||||| ||| |||| | | ||||| |||| Sbjct 394 GACAACCGCGTGCGTCATTTAGATTACGGCGTACAGTTTAATAAACTAATGTACTCGCGT 453 Query 41597 TTAATCAATAACGATTACATCACACTGTTCAGCC---CTGACGTTGCAAATGATCGCCTG 41653 ||||| || |||| ||||| || |||| |||| |||| || || |||| Sbjct 454 TTAATTAAAGACGACTACATTACCTTGTTTAGCCCCTCTGATGTGCCA------GGCCTT 507 Query 41654 TATGATGCTTTCTATCAAGCTGATCAGACTGAGTTCGAAGAACTCTATACCAGTTTGGAA 41713 || ||||| || | | ||| | |||| ||||| || | || ||| | | ||| Sbjct 508 TACGATGCATTTTTTGAAGACCA--AGAC-GAGTTTGACGCGCTTTATGTAAAATACGAA 564 Query 41714 AAAGACCCAACGGTACGCAAGAAACGCATTAAAGC 41748 ||||| | | | || || |||||||||||||| Sbjct 565 CAAGACGAATCAATTCGTAAAAAACGCATTAAAGC 599 >seq506238 Length=275 Score = 147 bits (162), Expect = 2e-30 Identities = 143/184 (78%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 51021 GAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGAAAGATGCTGTG 51080 |||||||| || || |||||||||||||| ||||||| ||||| || |||||||||| Sbjct 221 GAAGGTGGTCAACATTTAAACGTGAATGTGTTACGTCGTGAAACATTGGAAGATGCTGTT 162 Query 51081 AAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGCTTT 51140 ||||| ||||| || || ||||| ||||| || || || |||||||| ||||| || ||| Sbjct 161 AAACACCCTGAAAAATATCCACAATTAACTATTCGTGTATCAGGTTACGCAGTGCGTTTT 102 Query 51141 AATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACCTTTACGGAAAGCATG 51200 || || | || ||||||||||||| ||||| | | | || ||||| |||| || Sbjct 101 AACTCATTAACACCAGAACAACAGCAAGACGTATTAACACGTACATTTACAGAAACATTG 42 Query 51201 TAAT 51204 |||| Sbjct 41 TAAT 38 >seq508109 Length=334 Score = 131 bits (144), Expect = 2e-25 Identities = 212/305 (70%), Gaps = 0/305 (0%) Strand=Plus/Minus Query 91831 CCGCGTCCCTTTTGTTTCAGTCCCAGGAACACGATCGCGTTTACTTGTTTCAGGCGCGGA 91890 ||||| |||||||| |||| | | |||||| || || ||||| | | || || Sbjct 305 CCGCGACCCTTTTGCTTCAATGATAAGAACACAATAGCATTTACATTAGCTAATCGTGGG 246 Query 91891 TCGTTCTTCACAGCATCAACCACGTTAAACGCATCATCATAGGTTTTAGAGCTAACCATG 91950 || | |||| ||| ||| || || ||||||| ||| || | || | ||| Sbjct 245 TCAGTTTTCATAGCTTCAGTTACAGTATACGCATCTTCAATAGTACGACCACTGATCATA 186 Query 91951 AAATGCAGGTTGATTTGTTGTTGTCCTGCTTCTGCCAGGTTTGCTACTGAGTCGAAAGCG 92010 || || ||||||||||| | ||| || || | | | || || ||| || || Sbjct 185 AAGTGTAGGTTGATTTGCTTTTGACCAGCAGCGGTTAAACGCGCAACACTGTCAAACGCT 126 Query 92011 ACATCAAAGCCAGCGTGTTTATAAACCGATACCGCAACAGCCCCAGCAACCGCCGCTAAA 92070 |||||||| ||||||||||||||||| ||||| |||| ||| |||||||| | ||||| Sbjct 125 ACATCAAAACCAGCGTGTTTATAAACTGATACAGCAATAGCACCAGCAACTGATGCTAAT 66 Query 92071 CGCGCTGCAACGTCTTTAGAGACATCAGCAATGGTAAGGTTAGGTACAATACCTTTAGAA 92130 || ||||| |||| || ||||||||||| || || || || | |||||||| ||| Sbjct 65 TTAGCAGCAACTTCTTCTGACACATCAGCAATTGTTAGATTTGGGATAATACCTTGTGAA 6 Query 92131 CGCGC 92135 || || Sbjct 5 CGAGC 1 >seq128994 Length=861 Score = 111 bits (122), Expect = 2e-19 Identities = 204/297 (69%), Gaps = 4/297 (1%) Strand=Plus/Minus Query 43469 TATCTGTGTATGCACGCTGTCAACGCTCTGGAAGCGATTCGTTTCTATGTCTCGTTTACC 43528 ||| |||| ||| | ||||| || | ||||||||||| ||||||||| ||| || Sbjct 472 TATTTGTGCATGATGTCAGTCAATGCCTTAGAAGCGATTCGCTTCTATGTCAGTTTTGCC 413 Query 43529 TTTACGTTCAACTTTGCCGAACAGGGCAAGATGGAAGGTAACGCAAAGATCATGCGTCTG 43588 | | |||| |||||| |||| | ||||||||||| || || || || || | Sbjct 412 TGTTCGTTTGCCTTTGCTGAACGTCGTGTTATGGAAGGTAATGCTAAAATTATTCGCTTA 353 Query 43589 ATTGCCCGTGATGAAGCACTTCATCAGAAAGGTACTCAAAGCAAGATCCGACTCTG--GC 43646 ||||||||||||||||| | || | || |||| ||| || | ||||| || Sbjct 352 ATTGCCCGTGATGAAGCCTTACACCTCAATAGTACACAA--CACATTTTAGCTCTGATGC 295 Query 43647 AGATGGGTAAAGATGACCCAGAAATGGCAGAAATCGCGTATCAGTACGAAGAAGAAGCAA 43706 || |||||||| ||||||||||||| |||||| || | ||| | ||||||| Sbjct 294 AGGGTGGTAAAGACGACCCAGAAATGGGAGAAATTGCTGCTGAGTGTAAGCAAGAAGCGT 235 Query 43707 CACAGATTTTCCTCGAAGTTTACGAGCAGGAAAAAGAATGGGCTGAACACTTATTCA 43763 | | ||| || ||| || || |||||||||||||| | ||||||||| Sbjct 234 ATGACTTATTCGTCAAAGCGGCGGAACAAGAAAAAGAATGGGCCAAGTACTTATTCA 178 >seq522862 Length=256 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/168 (73%), Gaps = 12/168 (7%) Strand=Plus/Plus Query 43076 TCTAACCTGCAATATCAAACCCTGTTAGATACCATTCAGGGACGTGGCCCTAACCTGGCG 43135 || |||||| |||||||||| || ||||| | || ||||| ||| | |||||| |||| Sbjct 2 TCAAACCTGAAATATCAAACACTATTAGACTCGATACAGGGTCGTAGTCCTAACATGGCA 61 Query 43136 TTTCTCCCGATTG---CCT---CTGATGTTTCAATGGAAACGTGGATCGAAACATGGGCT 43189 || || ||||| | ||| |||| ||| || || ||||||||||| ||| | Sbjct 62 TTACTTCCGATCGTATCCTTACCTGA-GTTA-----GAGACATGGATCGAAACCTGGTCC 115 Query 43190 TTCAGTGAAACAATTCATAGCCGCAGTTATACACACATTCAGCGTAAC 43237 |||||||| || || || |||| || || ||||| |||| |||||| Sbjct 116 TTCAGTGAGACTATCCACAGCCAGAGCTACACACATATTCTTCGTAAC 163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566274872129520