Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_025425.1
Length=163424
Score E
Sequences producing significant alignments: (Bits) Value
seq449735 147 2e-30
seq509673 127 2e-24
seq351952 98.7 1e-15
seq506238 91.5 2e-13
>seq449735
Length=3187
Score = 147 bits (162), Expect = 2e-30
Identities = 317/467 (68%), Gaps = 8/467 (2%)
Strand=Plus/Minus
Query 135307 GGACTAAACAGAGTAATGTAATCCCGTTTAAGGAATCGCTCTACCATCAGGTTATTAATC 135366
|| ||||||| |||||||| || ||||| || ||| ||| || ||||||| |
Sbjct 488 GGGCTAAACAAGGTAATGTAGTCGTCTTTAATTAAACGCGAGTACATTAGTTTATTAAAC 429
Query 135367 TGTACGCCGTAGTCAAGATGGCGAATGCGGTTATCTTCCACGCCCTTATTGTTCTTTAAC 135426
||||||||||| || | ||| || | |||||| || || || || || || || |
Sbjct 428 TGTACGCCGTAATCTAAATGACGCACGCGGTTGTCATCAACCCCGCGGTTATTTTTAAGT 369
Query 135427 ACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAGAGTCGCCGCCCCGCCA 135486
|| | ||| |||| | ||||||||||| | ||||| | | || || || ||||||
Sbjct 368 ACTAACAGGTTTTCTACTTCTAAATGCCAAAGCGGGTAGAACAAGGTTGCTGCGCCGCCA 309
Query 135487 CGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATGTTTCCAGAATGGGATA 135546
|| | ||||||||| || || ||||| || || ||||| || || | || || |||
Sbjct 308 CGTACACCGCCTTGCGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTATAAAAAGGAATA 249
Query 135547 ACGCCAGTATG--ACGAACTTCACCATGCCCGATCTTAGATCCTTCCGCGCGAATCATGC 135604
|| ||||| ||| |||| |||| | || | || || ||||| |
Sbjct 248 CAACCCGTATGGTACG--CTTCGCCATTGCGAATGTGGCTACCCAGTGCACGAATGCGAC 191
Query 135605 CAGCGTTGATACCGATACCCGCACGCTTGCTA-ATATACTTGATGATTGCATTTGCTGTT 135663
| ||||| || || || || ||||| |||| | | || || | |||||| | ||
Sbjct 190 CTGCGTTAATGCCAATGCCGGCACG-TTGCGATACGTATTTAACAATTGCAGACGAGGTG 132
Query 135664 TCGTTGATGCCCTGCAATG-AGTCATCACTTTCAATCACCACACACGAACTAAATTGGCG 135722
|||| || | ||| | ||| ||| || || | |||||||| ||||| |||||
Sbjct 131 GCGTTAATTGAAT-CAAGGCTGTCGCCACACTCTATTAATACACACGAGCTAAACTGGCG 73
Query 135723 TGTTGGGGTACGCACACCAGCCATAATCGGAGTAGGCAGAGAGATTT 135769
|||||| ||||| ||||| |||||||| || ||||| || || ||||
Sbjct 72 TGTTGGCGTACGAACACCTGCCATAATTGGCGTAGGTAGTGAAATTT 26
>seq509673
Length=441
Score = 127 bits (140), Expect = 2e-24
Identities = 153/204 (75%), Gaps = 8/204 (4%)
Strand=Plus/Plus
Query 135358 TTATTAATCTGTACGCCGTAGTCAAGATGGCGAATGCGGTTATCTTCCACGCCC---TTA 135414
||||| | |||||||||||| || | ||| || | ||||| ||||||||||| |||
Sbjct 219 TTATTTAACTGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTA 278
Query 135415 TTGTTCTTTAACAC-AATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAGAGT 135473
|| ||| || || ||| |||| ||| ||||||||||| | ||||||| | | ||
Sbjct 279 TTTTTCAGTACCAATAAT--GACT--CAACTTCTAAATGCCATAATGGGTAAAACAACGT 334
Query 135474 CGCCGCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATGTTT 135533
||| || |||||||| | |||||||||||||| | ||||| ||||| || || ||||
Sbjct 335 CGCTGCACCGCCACGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTT 394
Query 135534 CCAGAATGGGATAACGCCAGTATG 135557
||||||||||| || |||||
Sbjct 395 ATAGAATGGGATACAACCCGTATG 418
>seq351952
Length=416
Score = 98.7 bits (108), Expect = 1e-15
Identities = 126/171 (74%), Gaps = 2/171 (1%)
Strand=Plus/Plus
Query 53994 GTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTA-TTGAAGCGCAC 54052
||||||||||| | ||| || || ||| || |||| ||| | || | || || || ||
Sbjct 34 GTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTA-ACGAGTTAAATCGTAC 92
Query 54053 TGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGCGTC 54112
||||||||| || || |||||||| | || || ||||| || |||| ||| | || ||
Sbjct 93 TGCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATTTTCCATTGCATC 152
Query 54113 CAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGGCCACCTTC 54163
|| |||||||| || || ||| ||||| || || || || ||||||||
Sbjct 153 CAATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACCTTC 203
>seq506238
Length=275
Score = 91.5 bits (100), Expect = 2e-13
Identities = 134/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 53974 TGAAAAATTAGAGAGATTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAG 54033
||||| |||| | | ||| ||||| ||||| | | ||||| |||| || ||||| |
Sbjct 32 TGAAATATTACAATGTTTCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTG 91
Query 54034 TCAGACTATTGAAGCGCACTGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCT 54093
| | || || |||||||||||||| || || ||||| || | || || || || |
Sbjct 92 TTAATGAGTTAAAACGCACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTT 151
Query 54094 CAGGATGTTCAACAGCGTCCAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCT 54153
|||| |||| |||||| || ||| |||| || || || || || || ||||| |
Sbjct 152 CAGGGTGTTTAACAGCATCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTT 211
Query 54154 GGCCACCTTC 54163
| ||||||||
Sbjct 212 GACCACCTTC 221
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 519394455249280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |