Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_025436.1 Length=133824 Score E Sequences producing significant alignments: (Bits) Value seq510567 439 2e-118 seq321323 134 1e-26 seq494877 113 4e-20 seq497957 87.8 2e-12 seq490120 86.0 5e-12 >seq510567 Length=489 Score = 439 bits (486), Expect = 2e-118 Identities = 313/358 (87%), Gaps = 1/358 (0%) Strand=Plus/Minus Query 53568 TAAACACAAAATTAGATTGTCGTAAACCAGATGGGACTGTAGATGAGGAATTGTCACGAG 53627 ||||||||||| | ||||| || ||||||||||| ||||||||||||||||||||||||| Sbjct 359 TAAACACAAAACTTGATTGCCGAAAACCAGATGGAACTGTAGATGAGGAATTGTCACGAG 300 Query 53628 CATTCCAAGAGGCTTGTTTTGAGCAGGGGATTAAGTGGCTTGGTACAGAT-GATACCGTA 53686 |||||||||||||||||||||| ||||||||||| |||||| || |||| ||||| || Sbjct 299 CATTCCAAGAGGCTTGTTTTGAACAGGGGATTAAATGGCTTTATAAAGATTGATACTGTG 240 Query 53687 CAGTACCTTAGTTCCCCTTTCTTGTTTGTAGAACAGTACGGATGTTTAAGTCACACCACT 53746 || | ||||| ||| ||||||||||||| |||||| ||||||||||| || | |||||| Sbjct 239 CAATTCCTTAATTCACCTTTCTTGTTTGCGGAACAGGACGGATGTTTAGGTTATACCACT 180 Query 53747 TTACAATCAGAAAAGTTCTTCTATGAATTTGAAGATTGTAAACAAATCAACTTCAAATAC 53806 ||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 179 TTATTATCAGAAAAGTTCTTCTATGAATTTGAAGATTGTATACAAATCAATTTCAAATAC 120 Query 53807 TCCCGCACATTAACTTGGGAAGCTACTGAAGTTAAACCTCCTGAACCAGAACCAGTGGAT 53866 |||||||||||||||||||||||| ||| ||| ||||| || |||||||||||| || Sbjct 119 TCCCGCACATTAACTTGGGAAGCTTCTGTTGTTGAACCTGTTGTACCAGAACCAGTAGAG 60 Query 53867 GAAATGGTGAACATTTGTGGTGTGGAATATTCAGCGAAAGAACTTAACGCTGCATTGG 53924 ||||||||| | ||||||||||| |||||||||||||||||| | | || || |||| Sbjct 59 GAAATGGTGGATATTTGTGGTGTTGAATATTCAGCGAAAGAATTGAGCGAAGCTTTGG 2 >seq321323 Length=562 Score = 134 bits (148), Expect = 1e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 93419 TTACAGCAAAAAGGTGGTTTAATATCTGAAAAGGTATTACCTCATTTTGCTAAAAATATG 93478 |||||||||| ||| |||||||| || ||||||||||||| | |||| | | |||| Sbjct 18 TTACAGCAAACAGGGGGTTTAATCTCCTCAAAGGTATTACCTGAGTTTGGCAGACTTATG 77 Query 93479 TCAGAGGCTGCTCGTGCTAACGGTGGTTTAGATAAGGCTTTATTATCTAACCGTGTTGCA 93538 || ||||| || || |||||||||||||| |||||| | |||||| | ||||| Sbjct 78 TCTGAGGCAGCACGAAACAACGGTGGTTTAGAAAAGGCTACGCTCTCTAACAGGGTTGCT 137 Query 93539 ATGAACAGGTTCATGTTCTCTATACAAGAAGCTGCTGATATTGTATTCAAGTCTGGATT 93597 ||||||||||||||||| |||| |||||||| || || | | |||||| ||| || Sbjct 138 ATGAACAGGTTCATGTTTGCTATTCAAGAAGCAGCAGACACCTTTTTCAAGAGTGGCTT 196 >seq494877 Length=296 Score = 113 bits (124), Expect = 4e-20 Identities = 73/80 (91%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 42049 GCGTAATTAGCTCAGATGGTAGAGCGCTATCCTTCCAAGTTAGTGGTCATCGGTTCGAAT 42108 ||||||||||||||| ||||||||| || ||||||||||| || |||||||||||||| Sbjct 224 GCGTAATTAGCTCAGTTGGTAGAGCACTGTCCTTCCAAGTCAGATGTCATCGGTTCGAAC 165 Query 42109 CCGATATTACGCTCCAAATG 42128 |||||||||||||||||||| Sbjct 164 CCGATATTACGCTCCAAATG 145 >seq497957 Length=241 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/223 (70%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 110095 AAAGTATTTGTAAAT-CCACCAATCCTTGCCTTTAAATAACCATCTTCA-GACAAGTCTC 110152 |||||||| ||||| || || || | |||||||||||||||||||||| || || | Sbjct 221 AAAGTATTAGTAAAAACCTCCGATACGTGCCTTTAAATAACCATCTTCATTCCATATCCC 162 Query 110153 GTAAGAACCCCTTGATAGTGTCTAACCTATGTTTTACCATAGTATACTTATCATACTTTA 110212 || ||||| || | ||| || | || || ||||||||| |||| ||| || || Sbjct 161 TCAAAAACCCTTTAAGAGTATCCAGTCTGTGCTTTACCATACTATATTTAGAGTAGGCTA 102 Query 110213 ATATCTTAGGTTCACT--CTCAGTAAGTCTTAGGATAGAAGGACAAAGCTCTTTACCATC 110270 |||| || |||| |||| ||| | ||||| ||| || |||||||| || Sbjct 101 GAATCTCTGG--CACTTCTTCAGCAAGCTCCATAATAGAGTCACAGAGTTCTTTACCTTC 44 Query 110271 ATCACCATCAATATTTATTTGTGGTATTTTCCTTGGTATGGGT 110313 |||||| || ||||| || || || || |||||| | ||| Sbjct 43 ATCACCCTCCATATTAATCTGGGGGATAAGTCTTGGTTTTGGT 1 >seq490120 Length=1028 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 42046 TAAGCGTAATTAGCTCAGATGGTAGAGCGCTATCCTTCCAAGTTAGTGGTCATCGGTTCG 42105 || ||| |||||||||| |||||||||| || | | ||||| || ||||||||||||| Sbjct 9 TACGCGACATTAGCTCAGTTGGTAGAGCGATACCTTGCCAAGGTATAGGTCATCGGTTCG 68 Query 42106 AATCCGATATTACGCTCCAAAT 42127 || ||||||| |||||||||| Sbjct 69 AACCCGATATGTCGCTCCAAAT 90 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425370132882270