Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_025436.1
Length=133824
Score E
Sequences producing significant alignments: (Bits) Value
seq510567 439 2e-118
seq321323 134 1e-26
seq494877 113 4e-20
seq497957 87.8 2e-12
seq490120 86.0 5e-12
>seq510567
Length=489
Score = 439 bits (486), Expect = 2e-118
Identities = 313/358 (87%), Gaps = 1/358 (0%)
Strand=Plus/Minus
Query 53568 TAAACACAAAATTAGATTGTCGTAAACCAGATGGGACTGTAGATGAGGAATTGTCACGAG 53627
||||||||||| | ||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 359 TAAACACAAAACTTGATTGCCGAAAACCAGATGGAACTGTAGATGAGGAATTGTCACGAG 300
Query 53628 CATTCCAAGAGGCTTGTTTTGAGCAGGGGATTAAGTGGCTTGGTACAGAT-GATACCGTA 53686
|||||||||||||||||||||| ||||||||||| |||||| || |||| ||||| ||
Sbjct 299 CATTCCAAGAGGCTTGTTTTGAACAGGGGATTAAATGGCTTTATAAAGATTGATACTGTG 240
Query 53687 CAGTACCTTAGTTCCCCTTTCTTGTTTGTAGAACAGTACGGATGTTTAAGTCACACCACT 53746
|| | ||||| ||| ||||||||||||| |||||| ||||||||||| || | ||||||
Sbjct 239 CAATTCCTTAATTCACCTTTCTTGTTTGCGGAACAGGACGGATGTTTAGGTTATACCACT 180
Query 53747 TTACAATCAGAAAAGTTCTTCTATGAATTTGAAGATTGTAAACAAATCAACTTCAAATAC 53806
||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 179 TTATTATCAGAAAAGTTCTTCTATGAATTTGAAGATTGTATACAAATCAATTTCAAATAC 120
Query 53807 TCCCGCACATTAACTTGGGAAGCTACTGAAGTTAAACCTCCTGAACCAGAACCAGTGGAT 53866
|||||||||||||||||||||||| ||| ||| ||||| || |||||||||||| ||
Sbjct 119 TCCCGCACATTAACTTGGGAAGCTTCTGTTGTTGAACCTGTTGTACCAGAACCAGTAGAG 60
Query 53867 GAAATGGTGAACATTTGTGGTGTGGAATATTCAGCGAAAGAACTTAACGCTGCATTGG 53924
||||||||| | ||||||||||| |||||||||||||||||| | | || || ||||
Sbjct 59 GAAATGGTGGATATTTGTGGTGTTGAATATTCAGCGAAAGAATTGAGCGAAGCTTTGG 2
>seq321323
Length=562
Score = 134 bits (148), Expect = 1e-26
Identities = 137/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 93419 TTACAGCAAAAAGGTGGTTTAATATCTGAAAAGGTATTACCTCATTTTGCTAAAAATATG 93478
|||||||||| ||| |||||||| || ||||||||||||| | |||| | | ||||
Sbjct 18 TTACAGCAAACAGGGGGTTTAATCTCCTCAAAGGTATTACCTGAGTTTGGCAGACTTATG 77
Query 93479 TCAGAGGCTGCTCGTGCTAACGGTGGTTTAGATAAGGCTTTATTATCTAACCGTGTTGCA 93538
|| ||||| || || |||||||||||||| |||||| | |||||| | |||||
Sbjct 78 TCTGAGGCAGCACGAAACAACGGTGGTTTAGAAAAGGCTACGCTCTCTAACAGGGTTGCT 137
Query 93539 ATGAACAGGTTCATGTTCTCTATACAAGAAGCTGCTGATATTGTATTCAAGTCTGGATT 93597
||||||||||||||||| |||| |||||||| || || | | |||||| ||| ||
Sbjct 138 ATGAACAGGTTCATGTTTGCTATTCAAGAAGCAGCAGACACCTTTTTCAAGAGTGGCTT 196
>seq494877
Length=296
Score = 113 bits (124), Expect = 4e-20
Identities = 73/80 (91%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 42049 GCGTAATTAGCTCAGATGGTAGAGCGCTATCCTTCCAAGTTAGTGGTCATCGGTTCGAAT 42108
||||||||||||||| ||||||||| || ||||||||||| || ||||||||||||||
Sbjct 224 GCGTAATTAGCTCAGTTGGTAGAGCACTGTCCTTCCAAGTCAGATGTCATCGGTTCGAAC 165
Query 42109 CCGATATTACGCTCCAAATG 42128
||||||||||||||||||||
Sbjct 164 CCGATATTACGCTCCAAATG 145
>seq497957
Length=241
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/223 (70%), Gaps = 6/223 (3%)
Strand=Plus/Minus
Query 110095 AAAGTATTTGTAAAT-CCACCAATCCTTGCCTTTAAATAACCATCTTCA-GACAAGTCTC 110152
|||||||| ||||| || || || | |||||||||||||||||||||| || || |
Sbjct 221 AAAGTATTAGTAAAAACCTCCGATACGTGCCTTTAAATAACCATCTTCATTCCATATCCC 162
Query 110153 GTAAGAACCCCTTGATAGTGTCTAACCTATGTTTTACCATAGTATACTTATCATACTTTA 110212
|| ||||| || | ||| || | || || ||||||||| |||| ||| || ||
Sbjct 161 TCAAAAACCCTTTAAGAGTATCCAGTCTGTGCTTTACCATACTATATTTAGAGTAGGCTA 102
Query 110213 ATATCTTAGGTTCACT--CTCAGTAAGTCTTAGGATAGAAGGACAAAGCTCTTTACCATC 110270
|||| || |||| |||| ||| | ||||| ||| || |||||||| ||
Sbjct 101 GAATCTCTGG--CACTTCTTCAGCAAGCTCCATAATAGAGTCACAGAGTTCTTTACCTTC 44
Query 110271 ATCACCATCAATATTTATTTGTGGTATTTTCCTTGGTATGGGT 110313
|||||| || ||||| || || || || |||||| | |||
Sbjct 43 ATCACCCTCCATATTAATCTGGGGGATAAGTCTTGGTTTTGGT 1
>seq490120
Length=1028
Score = 86.0 bits (94), Expect = 5e-12
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 42046 TAAGCGTAATTAGCTCAGATGGTAGAGCGCTATCCTTCCAAGTTAGTGGTCATCGGTTCG 42105
|| ||| |||||||||| |||||||||| || | | ||||| || |||||||||||||
Sbjct 9 TACGCGACATTAGCTCAGTTGGTAGAGCGATACCTTGCCAAGGTATAGGTCATCGGTTCG 68
Query 42106 AATCCGATATTACGCTCCAAAT 42127
|| ||||||| ||||||||||
Sbjct 69 AACCCGATATGTCGCTCCAAAT 90
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425370132882270
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |