Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_025437.1 Length=169062 Score E Sequences producing significant alignments: (Bits) Value seq449735 197 1e-45 seq506238 141 1e-28 seq509673 127 2e-24 seq351952 120 3e-22 seq128994 98.7 1e-15 >seq449735 Length=3187 Score = 197 bits (218), Expect = 1e-45 Identities = 486/734 (66%), Gaps = 5/734 (1%) Strand=Plus/Minus Query 142046 TTAGTTGGAATAGCGATTTCACAACATAAGTTACTCTGTCGAATTGGAGCTTTTTCACGA 142105 |||||||| | || ||||| ||||||| ||| || ||||| || || || | | Sbjct 755 TTAGTTGGTAATGCAATTTCTAAACATAAATTAGATTGGCGAATAGGTGCCACTTTAGCA 696 Query 142106 ATAAATGGAGTGTAGTTGTTCGTGTTATCAACGAATTGTGGATAAATTCGAGCAGTACCA 142165 || || || ||| | || || |||||| |||| ||||| ||| | |||| Sbjct 695 ATGAACGGGCTGTGCGTATTACAGTGGTCAACGTTTTGTAAGTAAATACGACCGGTACTT 636 Query 142166 GAGCGTTCAGTCATGAACAATTCAAAGAGTTCTAGTGCTTTGATTCTTTTCTTTCTGATT 142225 | ||||| | |||| | || ||||| | ||||| || | ||| || | ||| Sbjct 635 GCACGTTCTTGCGCAAACATTGAGAACAGTTCAATAGCTTTAATGCGTTTTTTACGAATT 576 Query 142226 GTTGGGTCTTTTTCAGCTTTCTCATAAAGCTCACGGAATTTATCTTGATCTTCAAAGAAC 142285 | | ||||| ||| ||| |||||||| | || | ||||| |||||||| || Sbjct 575 GATTCGTCTTGTTCGTATTTTACATAAAGCGCGTCAAACTCGTCTTGGTCTTCAAAAAAT 516 Query 142286 GAGTAGTATAGTTCGCCTGACATTTCGTGAGGGCTAAATAAAGTAATATAATCATTTTTA 142345 | | ||| || ||||| || || |||||||| || ||||| || || | |||| Sbjct 515 GCATCGTAAAG---GCCTGGCACATCAGAGGGGCTAAACAAGGTAATGTAGTCGTCTTTA 459 Query 142346 CCAAGGCGTTCCATCATAAGGTCATTAATCTGAATTCCGTAGTCCATATGTCTAATACGG 142405 | || ||| || | ||||| ||| | ||||| || | ||| | | ||| Sbjct 458 ATTAAACGCGAGTACATTAGTTTATTAAACTGTACGCCGTAATCTAAATGACGCACGCGG 399 Query 142406 TTTTCATCCACGCCTTTGTTATTTTTCAGAACCAACAGGTTCTCTACTTCTAAGTGCCAC 142465 || ||||| || || ||||||||| || || |||||||| ||||||||||| ||||| Sbjct 398 TTGTCATCAACCCCGCGGTTATTTTTAAGTACTAACAGGTTTTCTACTTCTAAATGCCAA 339 Query 142466 ATCGGATAATACGCTGTAGCAGCACCACCACGAATACCACCTTGAGAACAAGATTTTACT 142525 | ||| || || || || || || ||||| | ||| ||||| ||||| ||| || Sbjct 338 AGCGGGTAGAACAAGGTTGCTGCGCCGCCACGTACACCGCCTTGCGAACAGCTTTTAACC 279 Query 142526 GCAGTTTGGAAATGTTTCCAGAATGGAATAACACCCGTATGTCGAACTTCACCCATACCA 142585 || ||||| || || || | || |||||| ||||||||| |||| || | | | Sbjct 278 GCTGTTTGAAAGTGCTTATAAAAAGGAATACAACCCGTATGGTACGCTTCGCCATTGCGA 219 Query 142586 ATCTTAGAACCTTCTGCACGAAGCATACCAACGTTGATACCGATACCAGCTCGTTTAGAA 142645 || | ||| |||||||| ||| |||| || || || || || |||| || Sbjct 218 ATGTGGCTACCCAGTGCACGAATGCGACCTGCGTTAATGCCAATGCCGGCACGTTGCGAT 159 Query 142646 ATATATTCAATAATTGATGCTGAAGTTTTGTTAATAGATTTTAACGAATCACCGGCTTCA 142705 | |||| || ||||| | || || |||||| || | | || || || Sbjct 158 ACGTATTTAACAATTGCAGACGAGGTGGCGTTAATTGAATCAAGGCTGTCGCCACACTCT 99 Query 142706 ATAACTACACAACTAG-AGAACTGGCGAGTTGGAGTACGAGCACCTGCCATAATTGGGGT 142764 || | ||||| || || |||||||| ||||| |||||| |||||||||||||||| || Sbjct 98 ATTAATACAC-ACGAGCTAAACTGGCGTGTTGGCGTACGAACACCTGCCATAATTGGCGT 40 Query 142765 TGGCAATGAAACTT 142778 || | ||||| || Sbjct 39 AGGTAGTGAAATTT 26 >seq506238 Length=275 Score = 141 bits (156), Expect = 1e-28 Identities = 135/173 (78%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 62339 TCAGTAAAGGTACGAGCGATAACGTCACGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGA 62398 || ||||| ||||| | | ||||| |||| ||||| || || | |||||||| || Sbjct 49 TCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATGAGTTAAAACGC 108 Query 62399 ACTGCATAACCGGATACACGGATGGTCAACTGCGGATATTTTTCTGGATGCTTAACTGCA 62458 ||||| ||||| |||||||| || || || || ||||||||||| || || ||||| ||| Sbjct 109 ACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGTGTTTAACAGCA 168 Query 62459 TCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTC 62511 ||||||| ||||||||||| | || || ||||| | |||||||||||||| Sbjct 169 TCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTTGACCACCTTC 221 >seq509673 Length=441 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142369 ATTAATCTGAATTCCGTAGTCCATATGTCTAATACGGTTTTCATCCACGCCTTTGTTATT 142428 ||| | ||| | ||||| |||||||| | | |||||| || |||||||| |||||| Sbjct 221 ATTTAACTGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTATT 280 Query 142429 TTTCAGAACCAACAGGTTCTCTACTTCTAAGTGCCACATCGGATAATACGCTGTAGCAGC 142488 |||||| ||||| | ||| |||||||| ||||| | || ||| || || || || Sbjct 281 TTTCAGTACCAATAATGACTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCGCTGC 340 Query 142489 ACCACCACGAATACCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAA 142548 ||| ||||| | || ||||| || || |||| || ||||||||||| |||| |||| Sbjct 341 ACCGCCACGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTTATAGAA 400 Query 142549 TGGAATAACACCCGTATG 142566 ||| ||| ||||||||| Sbjct 401 TGGGATACAACCCGTATG 418 >seq351952 Length=416 Score = 120 bits (132), Expect = 3e-22 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 62329 TTATAGACTCTCAGTAAAGGTACGAGCGATAACGTCACGCTGCTGTTCCGGAGTCAGAGA 62388 |||||| || | ||||||||||| | ||| || || ||| ||||| | ||| | || Sbjct 21 TTATAGCGTCGCTGTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGA 80 Query 62389 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAACTGCGGATATTTTTCTGGATG 62448 |||||| || ||||| ||||| |||||||| || || || || ||||| || ||||||| Sbjct 81 GTTAAATCGTACTGCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATT 140 Query 62449 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 62508 | | |||||| | ||||||| || || |||||||| | |||||||||||| Sbjct 141 TTCCATTGCATCCAATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACC 200 Query 62509 TTCAAT 62514 |||||| Sbjct 201 TTCAAT 206 >seq128994 Length=861 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 140616 GCACGTTTCATAATTGCTTCATCTAATACAATCTCATCAAATACCTTCGATGGATCAGTA 140675 ||||| || | |||| | |||| | |||||| || ||||||||| ||||| | | || Sbjct 603 GCACGCTTTAAAATTTCATCATTTTGTACAATATCGTCAAATACCAAAGATGGGTTATTA 662 Query 140676 TAAAGATTTCGCATGATATGAGTATATGAACGAGAGTGAATGGTTTCACTGAATGTCCAT 140735 || ||| || || || ||||| || ||||| ||||||||||||||| || | |||| Sbjct 663 ACAATATTACGAATAATGTGAGTGTACGAACGCGAGTGAATGGTTTCAGAAAACGACCAT 722 Query 140736 GTAGCAACCCATGTATCTAATGAAGGGTCAGAAATCAGTGCCATAAGTACCGCAGATGGG 140795 || ||| ||| || || ||| ||| || | || | || || | || || || Sbjct 723 GTTTCAATCCACGTTTCCAATTCAGGTAGCGATACCAAAGGCAAAAATGCCACATTCGGT 782 Query 140796 GCCCTGCCTTGGATAGAATCTAATAATGATTGATACTTAAGATT 140839 | | |||||| || || ||||| || | ||| ||||| | ||| Sbjct 783 GAGCGGCCTTGAATTGAGTCTAACAAGGTTTGGTACTTCAAATT 826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537317544038240