Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_025457.1
Length=42654
Score E
Sequences producing significant alignments: (Bits) Value
seq516303 170 5e-38
seq503848 89.7 1e-13
>seq516303
Length=336
Score = 170 bits (188), Expect = 5e-38
Identities = 230/318 (72%), Gaps = 7/318 (2%)
Strand=Plus/Minus
Query 20647 GAGCTTGAACAATTCCAATTTTGGAAAACTCAAATGGCTACTTACTACACTAATGAGGCT 20706
||| | ||||| ||| | || |||||||| || ||| | ||| |||||| ||||
Sbjct 314 GAGTTGGAACAGTTCAAGTTCTGGAAAACCCAGATGAGTGCTTGGTACACTGCTGAGAAC 255
Query 20707 AAACGTAAAGGTCGTCACATGGGTATCCTGTCACGTA---TCAATGAACTTGTGAAATAT 20763
|||||||| |||||||| | ||||||||| ||| ||| || | | |||
Sbjct 254 AAACGTAAGGGTCGTCATGTAGGTATCCTGA---GTAAGCTCACAGAGTTAGCTCGTTAT 198
Query 20764 CAAGAGGAATCACGCTTATACTTCCCGACATTCATTGACTGGCGTGGTCGTTTATACTTC 20823
||||| || | | | |||||||| || || ||||| |||||||| || || |||||
Sbjct 197 CAAGACGAGGTAGCCCTGTACTTCCCAACCTTTATTGATTGGCGTGGACGATTGTACTTT 138
Query 20824 CGTTCTAATCTTAACCCGCAATCATCTGATGCAGTTAAAGGCTGCTTAGAGTTCGCTGAG 20883
| ||| | || || || |||||| || |||| ||||| || | ||||||||||||
Sbjct 137 AGAAGTAACTTGAATCCACAGTCATCT-ATTCAGTCAAAGGTTGTCTTGAGTTCGCTGAG 79
Query 20884 GGTAAAGTGTTAGGTAAAGATGGACTGCGTTGGTTAAAGGCGCATGTCGCTAACTGTTGT 20943
|||||| ||||| |||||| || |||||||| || ||||| |||||||| |||
Sbjct 78 GGTAAACGTCTAGGTTCAGATGGTCTTATGTGGTTAAAAGCTCATGTAGCTAACTGCTGT 19
Query 20944 GGTTTTGATAAACACGAC 20961
|||| |||||||||||||
Sbjct 18 GGTTATGATAAACACGAC 1
>seq503848
Length=345
Score = 89.7 bits (98), Expect = 1e-13
Identities = 185/270 (69%), Gaps = 4/270 (1%)
Strand=Plus/Plus
Query 19811 CAGGTATTGGTGGTAAGTATAAGAAGTTATTAAAGATTGCAAAGCCTGAAGTATTAGTTA 19870
|||||| | |||||||| ||||| | || || || || || || | || |
Sbjct 66 CAGGTACTAAAGGTAAGTACAAGAACCTCCTACGTATAGCCTCACCAGAGGTGCTGGTAA 125
Query 19871 TGGCGGGTATCCGCGAGGTTATCAATGGCTGTGCTAACCCTGAACCTATAGTA-ATGCAG 19929
|||| ||| | || |||||||| ||||| |||||| |||| || | || | ||||||
Sbjct 126 TGGCTGGTTTACGTGAGGTTATTAATGGTTGTGCTCACCCAGA-CTTACAACCTATGCAG 184
Query 19930 AGCTTCTTACGTCAACTAGGTCGGATTATTGAATCTGAATCTATGTTGGTATGTATGGAG 19989
| || ||||| | | || | | ||||| ||||| |||| | | ||||||||
Sbjct 185 ACAGTCCTACGTAACATCGGGAGAGTAATTGAGTCTGAGAGTATGCTCGCTTGTATGGAA 244
Query 19990 CAAGTATCTGATGTTTATACAAATCGTACAGTAGAGTATCTTGATTCAGCAGGTACTAAA 20049
||||| ||| ||||| | | ||||||||||| | ||| |||||||||||||
Sbjct 245 CAAGTGAATGACCGATATACTTCTAGAACAGTAGAGTACTTGGATGCAGCAGGTACTAAG 304
Query 20050 TCCACTACA-CACCGCTACCGTACATTCCT 20078
| || | || ||| | ||| | ||||||||
Sbjct 305 T-CAGTCCACCACAGGTACAGAACATTCCT 333
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 135520197857184
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |