Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_025459.1 Length=53744 Score E Sequences producing significant alignments: (Bits) Value seq500878 167 8e-37 seq503300 163 1e-35 seq512336 127 7e-25 seq268385 116 1e-21 seq518968 96.9 1e-15 seq491780 89.7 2e-13 seq488020 86.0 2e-12 seq481550 82.4 3e-11 >seq500878 Length=594 Score = 167 bits (184), Expect = 8e-37 Identities = 116/132 (88%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 50 CGTGAGACCCTGCCGCTGCAGTTCCTGCCGGTTCAGCTCCACGGTTTGGTGTACGAAGTT 109 ||||| | ||||||||||| |||||||| ||||| || ||||| ||||||||| ||||| Sbjct 591 CGTGAACCTCTGCCGCTGCAATTCCTGCCAGTTCAACTGCACGGCTTGGTGTACCAAGTT 532 Query 110 CCGGGTCGTGGCCGCTTCGGTGGTCTGGAAGTGACCTACCCGCGCGCCATCGACATCTGG 169 ||||| ||||| ||||||| |||||||||||| |||||||||||||| |||||||||||| Sbjct 531 CCGGGCCGTGGTCGCTTCGCTGGTCTGGAAGTTACCTACCCGCGCGCAATCGACATCTGG 472 Query 170 TACGGCCTGTAA 181 |||||| | ||| Sbjct 471 TACGGCATCTAA 460 >seq503300 Length=1332 Score = 163 bits (180), Expect = 1e-35 Identities = 303/443 (68%), Gaps = 4/443 (1%) Strand=Plus/Minus Query 50652 CGATGTGGTTACTGTCCAAGGGCTGCAGAATCTGTTGACCAACCCTGCTGGTGAGGCTGC 50711 ||| || ||||| || | || || ||||| || |||| |||||| ||||| ||||| Sbjct 1330 CGACGTAGTTACCATCAACGGCCTACAGAACTTGCTGACTTCCCCTGCGGGTGAAGCTGC 1271 Query 50712 TTTGTATAAGCGCTTCCGCATGATGAAGCAGATGAAGTCCAACCACAACATTCTGCTGCT 50771 || ||||||||||| ||||||||||||||||||||| | ||||| || | ||||| Sbjct 1270 GGTGATGAAGCGCTTCCGTTTGATGAAGCAGATGAAGTCCATCTACAACGTTATCCTGCT 1211 Query 50772 GGACAACACCGAAGAGTACAGCCCCAAGACCATCGCACTGAATGGCGTCAAGGATCTCAT 50831 ||| | || |||||| ||| | ||||| || | || |||||| ||||| | || Sbjct 1210 GGATAGCAACGAAGAATACGACAGCAAGAAGATTTCCTTGTCTGGCGTGAAGGACATGAT 1151 Query 50832 CTGGGAATACTT--ACGTATCATTGCTGCTGCTTGTGGTGTACCTGCAACGAGATTCCTC 50889 |||||| ||||| | ||| || || |||||| |||| | |||||||| | ||| | Sbjct 1150 CTGGGAGTACTTGGAAGTA--ATCGCCGCTGCTGTTGGTATCCCTGCAACTCGCTTCTTG 1093 Query 50890 TCGGCGTCGCCCGATGGCATGAACGCAACTGGCGAGTCAGACCTCAATAACTATATTGAC 50949 || || || || ||| |||| |||||||| ||| || || |||||| ||||| Sbjct 1092 TCTGCATCCCCAAGTGGGTTGAATGCAACTGGTGAGAGTGATCTTGTTAACTACGTTGAC 1033 Query 50950 CTGCTGCGCCAGAAACAGAAGTCTGTCTTTGACAAACGACTGCGTGTCATCGATAAGATT 51009 |||| | |||||| ||| | ||| || || ||||||| ||||| Sbjct 1032 TTGCTCATGGGTACTCAGAAGCGTGTGTATGATCCTCGCTTGAAGATCATCGACGAGATT 973 Query 51010 CTCGCTGCTCACTTCGACATCCAGCCGTTCAAGTATACCTGGAACTGCGCATTCCCAGAG 51069 || |||||| | || |||| | ||||| ||||||||| ||||| || Sbjct 972 ATCCAGATTCACTTTGGGCTCAAGCCTTGGAAGTACGAGTGGAACTGCATCTTCCCTGAA 913 Query 51070 TCGTCCCTGCAGAAGGAAGAACG 51092 || | ||||| |||||||| Sbjct 912 TCTGCTGCACAGAAAGAAGAACG 890 >seq512336 Length=506 Score = 127 bits (140), Expect = 7e-25 Identities = 280/416 (67%), Gaps = 8/416 (2%) Strand=Plus/Minus Query 53287 AAGATGGCCGGTATGCCGCTGGAAGCTCGTAAGACCATGGCCGCTCGCCGTGGTTACGAG 53346 || ||| ||| ||||| || ||||| ||| | |||| ||||||||||||||||| Sbjct 506 AACATGAGCGGCATGCCTCTCGAAGCACGTCGCGCACTGGCTGCTCGCCGTGGTTACGAA 447 Query 53347 GAGTACATCAACTCCGTTGTATGGCGTGGTGATGCTGATGCTGGTCTGGGTGGCCTGTTC 53406 || ||| ||||| | | ||| || ||||| | || | | | | ||||||||| Sbjct 446 GAATACGTCAACGATGCAATCTGGTACGGCGATGCCGCTGGTTCTTTCGTCGGCCTGTTC 387 Query 53407 ACCAACACCGACATC-CGCCGTACCGCTGTTGC--CAAGGGCA----CTGCTGGTACCAC 53459 ||||||| |||| ||| ||| | ||| | ||| ||| ||| | |||| Sbjct 386 GGCAACACCTTCATCGCGCACAACC-CAGTTCCTGCAACTGCACAATCTGGCGCCTCCAC 328 Query 53460 CGGCTGGATCACCAAGACTCCGGACGAAGTGATCGCTGACCTGACCCACGCTTGTGGTGA 53519 ||||||| ||||||||| |||||||| || || ||||||| | |||||||||| | Sbjct 327 TAAGTGGATCAACAAGACTCCAGACGAAGTTATTGCCGACCTGAACAACGCTTGTGGCGC 268 Query 53520 CATGTACGCGACCACCAAGAAGATCCATGCTCCGAAGGAGATCTGGATGTCGACCATGAA 53579 |||| ||| | |||||||| ||||| ||| | || | ||| || || ||| | Sbjct 267 AATGTTCGCTGCTACCAAGAAAATCCACCGTCCAGAAGAACTGTGGTTGCCGGTGATGGA 208 Query 53580 CTGGAATTACCTGTTCTCTACCCCGCGTAGCCCGATGTCTGACAAGACAGTCGGTGACTA 53639 ||||| ||| | || ||||| ||| || | ||||| || | ||| || Sbjct 207 ATGGAACTACATTCGTTCCACCCCACGTTCGCCTCAGAGTGACACCACCATTCTTGAGTA 148 Query 53640 CTTCTGCGAGAACAACCAGTTCGGCATCAAGAAGGAGAACATCAAGCCGCTGAACG 53695 |||| | |||||||| ||||| || | | ||| ||| | || || ||||||| Sbjct 147 CTTCCTCAAGAACAACGAGTTCATCACCGACAAGTCGAAGGTGAAACCTCTGAACG 92 >seq268385 Length=1441 Score = 116 bits (128), Expect = 1e-21 Identities = 242/353 (69%), Gaps = 8/353 (2%) Strand=Plus/Plus Query 45111 AATCAACCTGCCTACACCTGTTCTTAACGGATGT-AGAAACGGGGATTTCGACTCGATCT 45169 ||| || || || || ||||||||||| || ||| | || || ||||||||| || Sbjct 314 AATTAATCTCCCGACTCCTGTTCTTAATGG-TGTCCGTAATGGTGATTTCGACAGTATTA 372 Query 45170 CGTGCTCGGTCATTACCGGTGGTGATACAGTAGATTCCATTGGTGTGGCAGAGCACCTCG 45229 || | || |||| || ||||| | ||||| || || || || ||||| ||| Sbjct 373 GTTGTTGTGTTATTAGTGGCGGTGACTCCGTAGACAGTATCGGCGTTGCTGAGCATATCG 432 Query 45230 CATACAAGATGACTGCTAAGAAGGCAGGTATCGGTATCGAGATGCATACCCGCTCTGCTG 45289 |||| |||||||| ||||||||||| || |||||||| ||| | ||||| || || Sbjct 433 CATATAAGATGACAGCTAAGAAGGCGGGCATCGGTATTGAGTTTACAACCCGTTCCATTG 492 Query 45290 GTGACAAGGTAAAGAACGGCC--GTATCAAGCATCTGGGCAAGCACCCGATTTATGCTGC 45347 | || ||| ||| | ||| | ||||| || |||||||| || || | | Sbjct 493 GCTCTCCTGTTAAGGGCGGTCAAGTAGC--TCATCTAGGTAAGCACCCTATCTACTCGAC 550 Query 45348 TGTAGACAAGTCGGTCAAGATGTTCACTCAGGTAAGCCGTGGCGGTTCCGCAACTATGAC 45407 || ||||| | || || ||||| || || || ||||| || || || || ||| | || Sbjct 551 AGTGGACAAAGCTGTTAAAATGTTTACACAAGTTAGCCGAGGTGGCTCTGCTACTGTTAC 610 Query 45408 CTTCTCGGTGTAC-GACCCTGAGATTATGATGCTGTTGAAGCTCAAGTCACAG 45459 || | ||||| |||||||||||| | |||||| ||| ||| ||||| Sbjct 611 ATT-TAACTGTACTGACCCTGAGATTGGCAAGCTGTTACTGCTTAAGACACAG 662 >seq518968 Length=328 Score = 96.9 bits (106), Expect = 1e-15 Identities = 116/156 (74%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 3402 AGCCGACAAGTCCAACCGTGTCTACAAAGGTATCACCTTTGAAGCCGTTGGTGCCGGTGC 3461 |||||||||| |||||| |||| || |||||||| |||| || ||||| || || Sbjct 254 AGCCGACAAGGGCAACCGCATCTATCGTGGCATCACCTTCCAAGCTGTAGGTGCAGGCGC 195 Query 3462 GATGCACAAGGTAGTAGTTGGTGGCTCCTTCAACGAATAAGGATAACG-ATGAAACAGTA 3520 ||| |||||||| || | |||||| ||| || ||| | ||| ||||| ||||| Sbjct 194 GATTCACAAGGTTGTTATCACTGGCTCGTTCTCGGAGTAA---TCACGCATGAAGCAGTA 138 Query 3521 TAGCTTTTACAACGTCGATCTTCTGGTCGACGGTAT 3556 | ||||||||||||| || || ||| | || ||||| Sbjct 137 TTGCTTTTACAACGTAGACCTGCTGTTGGATGGTAT 102 >seq491780 Length=454 Score = 89.7 bits (98), Expect = 2e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 52981 GATGTTCGTCTGACCGATGACGACGGCATCTTCTTCCAGCGTCAACTGGAAGCCATCGAA 53040 ||||| |||||| | || | ||| ||| | |||||||| ||||||||||||| ||||| | Sbjct 320 GATGTCCGTCTGTCTGACGCCGATGGCCTGTTCTTCCAACGTCAACTGGAAGTCATCG-A 378 Query 53041 GCTCA-GACTTACGATGTGCTCTATCCGGACCTGGAAGCTCGTAGCTGCTTCAAGACCAA 53099 || | || ||||| || || ||||| ||||| |||||||| |||||| || Sbjct 379 GCAAACTACCTACGACGTCCTGTATCCAGACCTCGAAGCTCGCGAGTGCTTCCCTACTCT 438 Query 53100 CACCTTCGGCGGTGCT 53115 ||| ||||||||||| Sbjct 439 GACCCTCGGCGGTGCT 454 >seq488020 Length=335 Score = 86.0 bits (94), Expect = 2e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 48217 TTCGAGAAGTTCAGTAAGTGGTGCTTTGAAATCCAGATGGGTTTCAAGTTTCAGATGCAG 48276 || |||| ||||| |||||| ||||| || |||||||| |||||||||||||||||| Sbjct 169 TTTGAGATTTTCAGCAAGTGGGCTTTTGAGATTCAGATGGGCTTCAAGTTTCAGATGCAG 228 Query 48277 GATTTTCACTCGATTATATTTGAGTTCTGTCAGAAGATCGTCAATGGCGAAATAGACAGA 48336 || |||||| || || ||| | | || || | || || | ||| | || || Sbjct 229 GACTTTCACAGCATCATCTTTCAAGTATGCCAAGATATTATCGACGGCAAGCGTGATCGA 288 Query 48337 GGCATTGTCTGCATCCCACCTCGGCACTCGAAGACTCAGATCCTGAG 48383 | || || ||||||||||||||| ||||| ||||| || || Sbjct 289 GTAATCGTGAACATCCCACCTCGGCATAGTAAGACGCAGATTCTCAG 335 >seq481550 Length=787 Score = 82.4 bits (90), Expect = 3e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 39145 GGTGTGAACTGGCAGCGGAACCCTGTGTCAGGGATCTGGTACCACCTCAAGACCAACAAA 39204 ||||| ||||||||| |||| ||| | || | | |||||| ||||||||| | || Sbjct 692 GGTGTCAACTGGCAGTGGAATCCTATCTCCAAGCTGTGGTACTTCCTCAAGACAGATAAG 751 Query 39205 GACCGGTTCTCAACACTGTGCCAAGGTACTGGTGC 39239 || |||||||| ||| |||| |||||||||||||| Sbjct 752 GATCGGTTCTCGACATTGTGTCAAGGTACTGGTGC 786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170786740804344