Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_025470.1 Length=139004 Score E Sequences producing significant alignments: (Bits) Value seq510567 215 5e-51 seq519289 190 2e-43 seq321323 134 1e-26 seq494877 113 4e-20 seq517215 95.1 1e-14 seq490120 86.0 6e-12 >seq510567 Length=489 Score = 215 bits (238), Expect = 5e-51 Identities = 266/364 (73%), Gaps = 40/364 (11%) Strand=Plus/Minus Query 55549 TAAACACAAAATTAGATTGCCGCAAACCAGATGGAACTGTAGATGAGGAATTGTCACGAG 55608 ||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 359 TAAACACAAAACTTGATTGCCGAAAACCAGATGGAACTGTAGATGAGGAATTGTCACGAG 300 Query 55609 CATTCCAAGAGGCATGTTTTGAACAGGGGATT------GTTTGGAGAGGTGGTGATACTG 55662 ||||||||||||| |||||||||||||||||| ||| | || | |||||||| Sbjct 299 CATTCCAAGAGGCTTGTTTTGAACAGGGGATTAAATGGCTTTATAAAGAT--TGATACTG 242 Query 55663 -GTATCTCCTATTTAAATAAACCTTTCTTATATAC---AGGGGAGGAAGGTTTAGAGAAT 55718 | | ||| | ||| ||||||||| | | | | ||| | | |||||| || Sbjct 241 TGCAATTCC----TTAATTCACCTTTCTTGTTTGCGGAACAGGACGGATGTTTAGGTTAT 186 Query 55719 GGCAC-----TATGAGTA----GCACCTTTGAACGTGCTAAGGAAAAACAAATCAACTTC 55769 ||| ||| || | | || |||| || | | ||||||||| ||| Sbjct 185 ACCACTTTATTATCAGAAAAGTTCTTCTATGAATTTGAAGATTGTATACAAATCAATTTC 126 Query 55770 AACTACTCCCGCACATTAACTTGGGAAGCTACTGAAGTT---------------GAACCA 55814 || ||||||||||||||||||||||||||| ||| ||| |||||| Sbjct 125 AAATACTCCCGCACATTAACTTGGGAAGCTTCTGTTGTTGAACCTGTTGTACCAGAACCA 66 Query 55815 GCAGAAGAAATGGTGGATATTTGTGGTGTGGAATATTCAGCGAAAGAACTTAACGCTGCA 55874 | ||| ||||||||||||||||||||||| |||||||||||||||||| | | || || Sbjct 65 GTAGAGGAAATGGTGGATATTTGTGGTGTTGAATATTCAGCGAAAGAATTGAGCGAAGCT 6 Query 55875 TTGG 55878 |||| Sbjct 5 TTGG 2 >seq519289 Length=421 Score = 190 bits (210), Expect = 2e-43 Identities = 154/185 (83%), Gaps = 1/185 (1%) Strand=Plus/Plus Query 2329 CCTTCATATTTATGACCTTTCTTCTCACACTTACCCATCTCAATACCAATAGCTTTACGA 2388 |||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 150 CCTTCATACTTATGACCTTTCTTCTCACATACTCCCATCTCAATACCGATAGCTTTACGG 209 Query 2389 TTAAGATTCTTAGTAGCTTTGATTGTAGCACCACTACCAAATGTAAAGTCTAGTACAGTC 2448 || || || ||| |||| ||| ||||||||||||||| | || || ||||| |||||| Sbjct 210 TTCAGGTTGGTAGCAGCTCTGAATGTAGCACCACTACCCATGGTGAAATCTAGGACAGTC 269 Query 2449 TCACCTTCATTGGTGTAAGTTTTAATCATGTACTCCATCAGTTCTACAGGTTTTTGTGTT 2508 |||||||||| ||||| || |||||||||| |||||| ||||| || || |||||||| Sbjct 270 TCACCTTCATCAGTGTATGTCTTAATCATGT-CTCCATGAGTTCCACTGGCTTTTGTGTA 328 Query 2509 GGATG 2513 || || Sbjct 329 GGGTG 333 >seq321323 Length=562 Score = 134 bits (148), Expect = 1e-26 Identities = 186/258 (72%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 96745 TTACAGCAAAAAGGTGGTTTAATATCTGAAAAGGTATTACCTCATTTTGCTAAAAATATG 96804 |||||||||| ||| |||||||| || ||||||||||||| | |||| | | |||| Sbjct 18 TTACAGCAAACAGGGGGTTTAATCTCCTCAAAGGTATTACCTGAGTTTGGCAGACTTATG 77 Query 96805 TCAGAGGCTGCTCGTGCTAACGGTGGTTTAGATAAGGCTTTATTATCTAACCGTGTTGCA 96864 || ||||| || || |||||||||||||| |||||| | |||||| | ||||| Sbjct 78 TCTGAGGCAGCACGAAACAACGGTGGTTTAGAAAAGGCTACGCTCTCTAACAGGGTTGCT 137 Query 96865 ATGAACAGGTTCATGTTCTCTATACAAGAAGCTGCTGATATTGTATTCAAATCTGGGTTC 96924 ||||||||||||||||| |||| |||||||| || || | | ||||| ||| || Sbjct 138 ATGAACAGGTTCATGTTTGCTATTCAAGAAGCAGCAGACACCTTTTTCAAGAGTGGCTTT 197 Query 96925 GCTTCTGGGCTAACAGAGTTGTTCAATACAATGGCTGAATCTATTGTAGA-CTTAAAACC 96983 | ||| |||| | || ||||||| || ||| ||| ||| |||||| | Sbjct 198 TCAGAAGGGTTAACTAAATTCTTCAATATGTCCGCAGAAAGTATCCGAGAGCTTAAACCT 257 Query 96984 CTTATGGGAATCTTTAGG 97001 ||| |||||| ||||| Sbjct 258 CTT-TGGGAAGGATTAGG 274 >seq494877 Length=296 Score = 113 bits (124), Expect = 4e-20 Identities = 73/80 (91%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 42797 GCGTAATTAGCTCAGATGGTAGAGCGCTATCCTTCCAAGTTAGTGGTCATCGGTTCGAAT 42856 ||||||||||||||| ||||||||| || ||||||||||| || |||||||||||||| Sbjct 224 GCGTAATTAGCTCAGTTGGTAGAGCACTGTCCTTCCAAGTCAGATGTCATCGGTTCGAAC 165 Query 42857 CCGATATTACGCTCCAAATG 42876 |||||||||||||||||||| Sbjct 164 CCGATATTACGCTCCAAATG 145 >seq517215 Length=535 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 2802 ATACTTAAA-ATCTTTAATATTACTACACACAAGAAGTGAAGTGAAAGGTTCATTCCCCA 2860 ||| ||||| ||||| | |||| || | ||| | || ||||||||| | | | | Sbjct 79 ATATTTAAACATCTTCA-TATTTGAACCAATAAGCACTGTAGTGAAAGGCTGACTAGCAG 137 Query 2861 TAAGAACAACTACACCATTAGGTTTCAACACCCTTTTTAATTGTTTCCACATAGGCTCAA 2920 | | ||| | | |||||||| || | | | |||||| |||| |||||| || |||| Sbjct 138 TCATAACTATAGCGCCATTAGGCTTTATAATTCGTTTTAACTGTTCCCACATCGGTTCAA 197 Query 2921 TAGGTACAATTAAATCCCAAGACATAGGTGTTGACTGGTAAGGAGGATCTGTCAATATCA 2980 ||| | || | ||||||| | ||||| ||||| ||||| |||||||||| Sbjct 198 GAGGAATAACTGAATCCCACTTGCACGCTGTTGTGCCATAAGGCGGATCAGTCAATATCA 257 Query 2981 TATCAACACTGCCATCTGGTATTTCTTTCATACGTTCCAGACAATCACC 3029 ||||||| || ||||| || ||||||||||| || || ||||| || Sbjct 258 TATCAACCGAACCGTCTGGGATCTCTTTCATACGCTCAAGGCAATCTCC 306 >seq490120 Length=1028 Score = 86.0 bits (94), Expect = 6e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 42794 TAAGCGTAATTAGCTCAGATGGTAGAGCGCTATCCTTCCAAGTTAGTGGTCATCGGTTCG 42853 || ||| |||||||||| |||||||||| || | | ||||| || ||||||||||||| Sbjct 9 TACGCGACATTAGCTCAGTTGGTAGAGCGATACCTTGCCAAGGTATAGGTCATCGGTTCG 68 Query 42854 AATCCGATATTACGCTCCAAAT 42875 || ||||||| |||||||||| Sbjct 69 AACCCGATATGTCGCTCCAAAT 90 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441763765602880