Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_025470.1
Length=139004
Score E
Sequences producing significant alignments: (Bits) Value
seq510567 215 5e-51
seq519289 190 2e-43
seq321323 134 1e-26
seq494877 113 4e-20
seq517215 95.1 1e-14
seq490120 86.0 6e-12
>seq510567
Length=489
Score = 215 bits (238), Expect = 5e-51
Identities = 266/364 (73%), Gaps = 40/364 (11%)
Strand=Plus/Minus
Query 55549 TAAACACAAAATTAGATTGCCGCAAACCAGATGGAACTGTAGATGAGGAATTGTCACGAG 55608
||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 359 TAAACACAAAACTTGATTGCCGAAAACCAGATGGAACTGTAGATGAGGAATTGTCACGAG 300
Query 55609 CATTCCAAGAGGCATGTTTTGAACAGGGGATT------GTTTGGAGAGGTGGTGATACTG 55662
||||||||||||| |||||||||||||||||| ||| | || | ||||||||
Sbjct 299 CATTCCAAGAGGCTTGTTTTGAACAGGGGATTAAATGGCTTTATAAAGAT--TGATACTG 242
Query 55663 -GTATCTCCTATTTAAATAAACCTTTCTTATATAC---AGGGGAGGAAGGTTTAGAGAAT 55718
| | ||| | ||| ||||||||| | | | | ||| | | |||||| ||
Sbjct 241 TGCAATTCC----TTAATTCACCTTTCTTGTTTGCGGAACAGGACGGATGTTTAGGTTAT 186
Query 55719 GGCAC-----TATGAGTA----GCACCTTTGAACGTGCTAAGGAAAAACAAATCAACTTC 55769
||| ||| || | | || |||| || | | ||||||||| |||
Sbjct 185 ACCACTTTATTATCAGAAAAGTTCTTCTATGAATTTGAAGATTGTATACAAATCAATTTC 126
Query 55770 AACTACTCCCGCACATTAACTTGGGAAGCTACTGAAGTT---------------GAACCA 55814
|| ||||||||||||||||||||||||||| ||| ||| ||||||
Sbjct 125 AAATACTCCCGCACATTAACTTGGGAAGCTTCTGTTGTTGAACCTGTTGTACCAGAACCA 66
Query 55815 GCAGAAGAAATGGTGGATATTTGTGGTGTGGAATATTCAGCGAAAGAACTTAACGCTGCA 55874
| ||| ||||||||||||||||||||||| |||||||||||||||||| | | || ||
Sbjct 65 GTAGAGGAAATGGTGGATATTTGTGGTGTTGAATATTCAGCGAAAGAATTGAGCGAAGCT 6
Query 55875 TTGG 55878
||||
Sbjct 5 TTGG 2
>seq519289
Length=421
Score = 190 bits (210), Expect = 2e-43
Identities = 154/185 (83%), Gaps = 1/185 (1%)
Strand=Plus/Plus
Query 2329 CCTTCATATTTATGACCTTTCTTCTCACACTTACCCATCTCAATACCAATAGCTTTACGA 2388
|||||||| |||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 150 CCTTCATACTTATGACCTTTCTTCTCACATACTCCCATCTCAATACCGATAGCTTTACGG 209
Query 2389 TTAAGATTCTTAGTAGCTTTGATTGTAGCACCACTACCAAATGTAAAGTCTAGTACAGTC 2448
|| || || ||| |||| ||| ||||||||||||||| | || || ||||| ||||||
Sbjct 210 TTCAGGTTGGTAGCAGCTCTGAATGTAGCACCACTACCCATGGTGAAATCTAGGACAGTC 269
Query 2449 TCACCTTCATTGGTGTAAGTTTTAATCATGTACTCCATCAGTTCTACAGGTTTTTGTGTT 2508
|||||||||| ||||| || |||||||||| |||||| ||||| || || ||||||||
Sbjct 270 TCACCTTCATCAGTGTATGTCTTAATCATGT-CTCCATGAGTTCCACTGGCTTTTGTGTA 328
Query 2509 GGATG 2513
|| ||
Sbjct 329 GGGTG 333
>seq321323
Length=562
Score = 134 bits (148), Expect = 1e-26
Identities = 186/258 (72%), Gaps = 2/258 (1%)
Strand=Plus/Plus
Query 96745 TTACAGCAAAAAGGTGGTTTAATATCTGAAAAGGTATTACCTCATTTTGCTAAAAATATG 96804
|||||||||| ||| |||||||| || ||||||||||||| | |||| | | ||||
Sbjct 18 TTACAGCAAACAGGGGGTTTAATCTCCTCAAAGGTATTACCTGAGTTTGGCAGACTTATG 77
Query 96805 TCAGAGGCTGCTCGTGCTAACGGTGGTTTAGATAAGGCTTTATTATCTAACCGTGTTGCA 96864
|| ||||| || || |||||||||||||| |||||| | |||||| | |||||
Sbjct 78 TCTGAGGCAGCACGAAACAACGGTGGTTTAGAAAAGGCTACGCTCTCTAACAGGGTTGCT 137
Query 96865 ATGAACAGGTTCATGTTCTCTATACAAGAAGCTGCTGATATTGTATTCAAATCTGGGTTC 96924
||||||||||||||||| |||| |||||||| || || | | ||||| ||| ||
Sbjct 138 ATGAACAGGTTCATGTTTGCTATTCAAGAAGCAGCAGACACCTTTTTCAAGAGTGGCTTT 197
Query 96925 GCTTCTGGGCTAACAGAGTTGTTCAATACAATGGCTGAATCTATTGTAGA-CTTAAAACC 96983
| ||| |||| | || ||||||| || ||| ||| ||| |||||| |
Sbjct 198 TCAGAAGGGTTAACTAAATTCTTCAATATGTCCGCAGAAAGTATCCGAGAGCTTAAACCT 257
Query 96984 CTTATGGGAATCTTTAGG 97001
||| |||||| |||||
Sbjct 258 CTT-TGGGAAGGATTAGG 274
>seq494877
Length=296
Score = 113 bits (124), Expect = 4e-20
Identities = 73/80 (91%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 42797 GCGTAATTAGCTCAGATGGTAGAGCGCTATCCTTCCAAGTTAGTGGTCATCGGTTCGAAT 42856
||||||||||||||| ||||||||| || ||||||||||| || ||||||||||||||
Sbjct 224 GCGTAATTAGCTCAGTTGGTAGAGCACTGTCCTTCCAAGTCAGATGTCATCGGTTCGAAC 165
Query 42857 CCGATATTACGCTCCAAATG 42876
||||||||||||||||||||
Sbjct 164 CCGATATTACGCTCCAAATG 145
>seq517215
Length=535
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 2802 ATACTTAAA-ATCTTTAATATTACTACACACAAGAAGTGAAGTGAAAGGTTCATTCCCCA 2860
||| ||||| ||||| | |||| || | ||| | || ||||||||| | | | |
Sbjct 79 ATATTTAAACATCTTCA-TATTTGAACCAATAAGCACTGTAGTGAAAGGCTGACTAGCAG 137
Query 2861 TAAGAACAACTACACCATTAGGTTTCAACACCCTTTTTAATTGTTTCCACATAGGCTCAA 2920
| | ||| | | |||||||| || | | | |||||| |||| |||||| || ||||
Sbjct 138 TCATAACTATAGCGCCATTAGGCTTTATAATTCGTTTTAACTGTTCCCACATCGGTTCAA 197
Query 2921 TAGGTACAATTAAATCCCAAGACATAGGTGTTGACTGGTAAGGAGGATCTGTCAATATCA 2980
||| | || | ||||||| | ||||| ||||| ||||| ||||||||||
Sbjct 198 GAGGAATAACTGAATCCCACTTGCACGCTGTTGTGCCATAAGGCGGATCAGTCAATATCA 257
Query 2981 TATCAACACTGCCATCTGGTATTTCTTTCATACGTTCCAGACAATCACC 3029
||||||| || ||||| || ||||||||||| || || ||||| ||
Sbjct 258 TATCAACCGAACCGTCTGGGATCTCTTTCATACGCTCAAGGCAATCTCC 306
>seq490120
Length=1028
Score = 86.0 bits (94), Expect = 6e-12
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 42794 TAAGCGTAATTAGCTCAGATGGTAGAGCGCTATCCTTCCAAGTTAGTGGTCATCGGTTCG 42853
|| ||| |||||||||| |||||||||| || | | ||||| || |||||||||||||
Sbjct 9 TACGCGACATTAGCTCAGTTGGTAGAGCGATACCTTGCCAAGGTATAGGTCATCGGTTCG 68
Query 42854 AATCCGATATTACGCTCCAAAT 42875
|| ||||||| ||||||||||
Sbjct 69 AACCCGATATGTCGCTCCAAAT 90
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 441763765602880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |