Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_025829.1 Length=164999 Score E Sequences producing significant alignments: (Bits) Value seq449735 178 1e-39 seq506238 143 3e-29 seq509673 109 6e-19 seq351952 105 7e-18 seq487923 89.7 5e-13 seq326422 89.7 5e-13 seq128994 84.2 2e-11 >seq449735 Length=3187 Score = 178 bits (196), Expect = 1e-39 Identities = 400/593 (67%), Gaps = 15/593 (3%) Strand=Plus/Minus Query 143635 AACAGTTCACGGGCTTTAATACGCTTTTTACGAAT--ATTAGGGTCTTTTTCTGCGGCTT 143692 ||||||||| |||||||| || ||||||||||| ||| | |||| ||| | Sbjct 611 AACAGTTCAATAGCTTTAATGCGTTTTTTACGAATTGATTCG--TCTTGTTCGTATTTTA 554 Query 143693 CGTATAATTCACGG-AAACG-GTCTTGGTCTTTAAAATAAGAATAATAAAGTTCGCCACC 143750 | |||| | || |||| ||||||||||| |||| | | || ||||| ||| Sbjct 553 C--ATAAAGCGCGTCAAACTCGTCTTGGTCTTCAAAAAATGCATCGTAAAG---GCCTGG 499 Query 143751 CATTTCATGCGGACTGAACAAAGTAATGTAATCATTCTTTCCGAATCGTTCCATCATTAG 143810 || ||| || || ||||| |||||||| || | || || || |||||| Sbjct 498 CACATCAGAGGGGCTAAACAAGGTAATGTAGTCGTCTTTAATTAAACGCGAGTACATTAG 439 Query 143811 GTCATTCAGTTGAACGCCATAATCCATATGACGGATACGGTTTTCTTCTACACCTTTGTT 143870 | ||| | || ||||| ||||| | |||||| | ||||| || || || || ||| Sbjct 438 TTTATTAAACTGTACGCCGTAATCTAAATGACGCACGCGGTTGTCATCAACCCCGCGGTT 379 Query 143871 ATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATA--ATAAGCAGTA 143928 |||||| | || | || ||||| ||||| |||||||||| || || | ||| || Sbjct 378 ATTTTTAAGTACTAACAGGTTTTCTACTTCTAAATGCCAAAGCGGGTAGAACAAG--GTT 321 Query 143929 GCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTC 143988 || ||||||||||| | || || || ||||| |||||| || || ||||| || || Sbjct 320 GCTGCGCCGCCACGTACACCGCCTTGCGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTA 261 Query 143989 CAAAAAGGAATAACACCAGTATGACGCACTTCACCCATTCCAATCTTAGAACCTTCGGCA 144048 ||||||||||| ||| ||||| | |||| || | | ||| | ||| ||| Sbjct 260 TAAAAAGGAATACAACCCGTATGGTACGCTTCGCCATTGCGAATGTGGCTACCCAGTGCA 201 Query 144049 CGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAATTGAA 144108 ||||| ||| ||||||| ||||| || || |||| || | |||| |||||||| | Sbjct 200 CGAATGCGACCTGCGTTAATGCCAATGCCGGCACGTTGCGATACGTATTTAACAATTGCA 141 Query 144109 GCAGAAGCCTTATTGATAGACTTTAATGAATCACCTGCCTCAATAACAACGCATGAACTA 144168 | || | || || || | | || || ||| || | || || || ||| Sbjct 140 GACGAGGTGGCGTTAATTGAATCAAGGCTGTCGCCACACTCTATTAATACACACGAGCTA 81 Query 144169 AACTGCCGAGTTGGAGTACGGCAACCAGCCATAATAGGGGTTGGCAGTGAAAT 144221 ||||| || ||||| ||||| ||| |||||||| || || || |||||||| Sbjct 80 AACTGGCGTGTTGGCGTACGAACACCTGCCATAATTGGCGTAGGTAGTGAAAT 28 >seq506238 Length=275 Score = 143 bits (158), Expect = 3e-29 Identities = 142/184 (77%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 65096 ATTACAAGCTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 65155 ||||||| | || ||||| ||||| | | ||||| |||| ||||| || || | | Sbjct 38 ATTACAATGTTTCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATG 97 Query 65156 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 65215 ||||||| || ||||| ||||| |||||||| || || | || ||||||||||| || | Sbjct 98 AGTTAAAACGCACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGT 157 Query 65216 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCAC 65275 | ||||| |||||||||| ||||||||||| | || || ||||| | |||||||||| Sbjct 158 GTTTAACAGCATCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTTGACCAC 217 Query 65276 CTTC 65279 |||| Sbjct 218 CTTC 221 >seq509673 Length=441 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 143821 TGAACGCCATAATCCATATGACGGATACGGTTTTCTTCTACACCTTTGTTATTTTTCAAA 143880 || ||||| |||||||||||||||| |||||| ||||| || || ||||||||||| Sbjct 228 TGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTATTTTTCAGT 287 Query 143881 ACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 143940 || | | |||||||| |||||||| | || ||| | || || || |||||| Sbjct 288 ACCAATAATGACTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCGCTGCACCGCCA 347 Query 143941 CGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAATA 144000 || | || || ||||| || ||||||| ||||| || || |||| | || || ||| Sbjct 348 CGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTTATAGAATGGGATA 407 Query 144001 ACACCAGTATGACGCACTTCACC 144023 ||| ||||| || |||| || Sbjct 408 CAACCCGTATGCTGCGCTTCGCC 430 >seq351952 Length=416 Score = 105 bits (116), Expect = 7e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 65110 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 65169 ||||||||||| | ||| || || ||| ||||| | ||| | |||||||| || ||| Sbjct 34 GTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGAGTTAAATCGTACT 93 Query 65170 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 65229 || ||||| |||||||| || || | || ||||| || || |||| | | |||||| Sbjct 94 GCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATTTTCCATTGCATCC 153 Query 65230 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 65282 | ||||||| || || |||||||| | |||||||||||||||||| Sbjct 154 AATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACCTTCAAT 206 >seq487923 Length=1072 Score = 89.7 bits (98), Expect = 5e-13 Identities = 146/202 (72%), Gaps = 9/202 (4%) Strand=Plus/Minus Query 28329 ATACTAATTTATCTAGTACGTATTTTTGCCATGCATAATCATTACGGAATCCGAAGACCA 28388 ||| |||||||| || | || || |||||||| ||||||||| |||||||| || Sbjct 528 ATAGTAATTTATATA---CATACTTATGCCATGCTAAATCATTACCAAATCCGAATACTG 472 Query 28389 CGTCATTTGAACGCATGCTT-ACTAC-TGCATTGACTTTCTTATCACGAATCAGGTACT- 28445 ||||| ||| ||| || || || | | ||| | ||| ||||||||||| | |||| Sbjct 471 CGTCACATGAGCGC-TGATTGACAATATAGATTAA-TTTATTATCACGAATAAA-TACTT 415 Query 28446 GTACTGTATTCGTACACATGAAATCTGACATACCATCTTTATTGTAGTCAAACTGCATGG 28505 | || |||| ||||| || ||||||||||| ||| |||| | ||| || || | Sbjct 414 GAACATTATTAGTACAAATAAAATCTGACATTTCATTAGTATTCCATTCACTTTGAATAG 355 Query 28506 ATGGACGAGTATAAATCATGAT 28527 | || | |||||||||||| || Sbjct 354 AAGGTCTAGTATAAATCATAAT 333 >seq326422 Length=2068 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/115 (79%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 74104 GCGCTCTACCAAACTGAGCTACAC--GGAGTAAATTAAATTGGAGCGGATAATGAGAATC 74161 |||||||||||| |||||||| | | | | |||| |||||||| | | ||||| Sbjct 291 GCGCTCTACCAA-CTGAGCTATATCAGCATCACCATAAACTGGAGCGGGCAGCGGGAATC 349 Query 74162 GAACTCACATCATCAGATTGGAAGTCTGAGGTAAT-GCCATTATACGATATCCGC 74215 |||| | ||||||||| ||||||| |||||||||| ||||||||||||| |||| Sbjct 350 GAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 404 >seq128994 Length=861 Score = 84.2 bits (92), Expect = 2e-11 Identities = 119/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 142033 TCATCGTAAT-AGCGACCAATGGACTCGGCACGTTTCATAATATCTTCATCTAATACAAT 142091 |||||||||| |||| |||| ||||||| || | ||| || |||| | |||||| Sbjct 576 TCATCGTAATAAGCG-GCAATATCACCGGCACGCTTTAAAATTTCATCATTTTGTACAAT 634 Query 142092 CTCATCAAATACCTTTGACGGATCAGTATAAAGATTTCGCATAATATGAGTATATGAACG 142151 || ||||||||| || || | | || || ||| || ||||| ||||| || ||||| Sbjct 635 ATCGTCAAATACCAAAGATGGGTTATTAACAATATTACGAATAATGTGAGTGTACGAACG 694 Query 142152 GCTGTGAATAGTTTCACTAAAAGTCCATGTAGCAACCCATGTATC 142196 |||||| |||||| ||| | |||||| ||| ||| || || Sbjct 695 CGAGTGAATGGTTTCAGAAAACGACCATGTTTCAATCCACGTTTC 739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 524401348623280