Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq44246 187 2e-42
seq103378 95.1 1e-14
seq152719 93.3 4e-14
>seq44246
Length=4029
Score = 187 bits (206), Expect = 2e-42
Identities = 946/1478 (64%), Gaps = 55/1478 (4%)
Strand=Plus/Minus
Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952
||||| | || ||||| || | ||| || || | | || | ||||| ||| | | |
Sbjct 1762 TTGACGATCTGGAACTCTCCTGACAGGACCCGGCGGGTGTAGATGTTGCTGGTGTAGGCC 1703
Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012
|| | ||||| || ||||| | || ||||| |||| || || ||||| |||| |
Sbjct 1702 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGC 1643
Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAA-AGTTTGCCAGTCCCA 147071
| || || | || |||| | ||| || ||||||| || || |||||||||
Sbjct 1642 AGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTT-CCAGTCCCA 1584
Query 147072 CA--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGA 147129
|| ||| | ||||||| | |||||||||||||||||| | || ||| ||||
Sbjct 1583 CAGGTCG--GTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGG 1526
Query 147130 CTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCG-CCAATTCACAGCTTGCCTCGAG 147188
||| || |||| |||| || || | ||| ||| ||| ||||| ||||| ||
Sbjct 1525 GAGCCT-CGTACGTGTCGTAGGGGCCCA-GCTCGGCGGCCAGTTCGCAGCTGGCCTCCAG 1468
Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTC 147248
|| | ||||| ||||| || ||| || |||| || | || || ||| ||
Sbjct 1467 GGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGTTCAGCAGCTGGGCCTCGGGGCTTTC 1408
Query 147249 GTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGG 147308
| || ||||| || | ||||| ||||||| ||||||| |||| ||||| ||
Sbjct 1407 AAAGGGGTAACGCATCAGGATGAAGGCGTCGGCCAGGCCCTGGACGCCGATACCGATCGG 1348
Query 147309 TCGATGCTTTTCGTTG--CTGCGCTTCGCGCTCGCT-ATGGGATAGTGGTTGCGATCAAT 147365
| || | |||| ||| ||| |||| | || ||| ||| || ||
Sbjct 1347 CCTGTGGCGCTTGTTGGACTGA---TCGGCCTCGGGCACCGGGTAGAAGTTAATCTCTAT 1291
Query 147366 AATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATA 147425
|||||||| ||||| ||| | ||||| || | | | ||||||| ||| ||| |
Sbjct 1290 GATCTTGTTCAGGTTCTTCACGATCACTTTGGTCACAGACTCCAGTTTCTTGAAGTCAAA 1231
Query 147426 AGTCCCGTCTTCGAC-ACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGG 147484
||||| || | |||||| || ||| | ||||| || |||||||| || || |
Sbjct 1230 AGTCCGCTCGGGGGTGACGTAC--AT--GTTGAGAGCGATGGAGGCCAGATTACACACAG 1175
Query 147485 CCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGA 147544
| ||| ||| | | ||| | |||||||| | ||| ||||||||||| || |||
Sbjct 1174 CGACCTCATCGCCACTGGAGTATTCAACGATTTCCGTGCAGAGGTTGCTGCACTTGATGG 1115
Query 147545 CTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTC 147604
||||| || ||||| ||||| |||| ||||| ||||||||| | |||||||||||
Sbjct 1114 TTCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCG 1055
Query 147605 CGCCGGTCTCGACTTGCGTTTCAACGAT--------AAACCTATGCAGGTCCTGCGCTCG 147656
||| | ||| || | || | ||| | ||| ||| | ||| | |
Sbjct 1054 TGCCCGACTCCGTCTGGGACTCGATGATGGCGTGCCACACC--TGCTGAGCCTTCAC--- 1000
Query 147657 CACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTC 147716
||| |||| || |||||||| || || | ||| | | ||||||||| ||
Sbjct 999 CACACGCT--TGA-CCCGGCCCTCCCGCTCATATTGGGTGTAGAGCTTCTCAAACTCCTC 943
Query 147717 GCCGTAGCAATCGGCAAGGCCGGGACACT-GATGCGGACACATCAGCGACCACATGTCGT 147775
|| |||| ||| | || ||||| | || | || ||||||||||| ||||| | ||
Sbjct 942 CCCCCAGCACTCGTCCAGCCCGGGGCTCTCGCTG-GGACACATCAGAGACCAGTCCTGGT 884
Query 147776 CCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGC--G 147833
| || | ||| ||||| || || | ||||| |||| | ||||| | |
Sbjct 883 TGCTCTCCACCCTCTTCATGAACAGGTCGGGGATCCACAAGCCGTAGAAGAGATCTCTGG 824
Query 147834 CGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCGGC 147893
| || ||| ||||| ||| |||| |||| | || | | | | |||
Sbjct 823 CTCTCTGC--TCCTCCTTCCCCGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCAAA 766
Query 147894 GTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGAC 147950
|||||| || || | ||| | ||| | || || ||| || ||||||||||||||
Sbjct 765 GTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGTCGCTTGTTGCCGCCCTGGTCGAC 706
Query 147951 ATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTT 148010
|| ||| | ||||||| | || | || |||||| |||| ||| | | |||||||
Sbjct 705 ATAGCGTGCTGTGTTGTTGTAGACCCTCAGCATGGGGACCAGCCCGTTGGAGTTGCCGTT 646
Query 148011 GGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCC 148070
|||| ||| | ||| ||| || ||| | | ||| || || || || ||
Sbjct 645 GGTGCCGGCGATGTAGCTCCCGGTGGATCGGATGCAGCTGACGGCCACACCGATTCCTCC 586
Query 148071 -GCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGT 148129
|||| |||| || ||| || || | || || ||||||||| ||||||||||
Sbjct 585 TGCCG-ACTTGGAGATGAGTGCACACTGCTTCAGCGTGTCGTAGATGCCCTCGATGCTGT 527
Query 148130 CGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCG---CGTTCCCGCCG 148186
||| || | | |||| || || | | || || ||| ||||| ||
Sbjct 526 CGTCCTTCATGGTGAGCAGGAAGCAGCTGGAGA---GCTGAGGCCGGTTGGTTCCTGCGT 470
Query 148187 AGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAA 148246
||| || ||||| ||||| || ||| | || | | || | || ||||| |
Sbjct 469 TGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCCGAGAGCAGGTTGTAGGTCTCGA 410
Query 148247 TAGCGTCTTCGATGT-CGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGT 148305
| ||| | ||||| | |||| ||| || || | || || | |||||||||||||||
Sbjct 409 TGGCGGCGTCGATATCCGTC-TTGTGGATTCCGACCGACACCCTCATGAGCATGTGCTGC 351
Query 148306 GGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATA 148343
|| || || || |||| ||||||||| || || ||
Sbjct 350 GGCCGCTCCGCCACTTTGCCGTTGATCTTCAGCAGGTA 313
>seq103378
Length=1867
Score = 95.1 bits (104), Expect = 1e-14
Identities = 81/100 (81%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562
|||||| ||| || || | |||||| |||||| |||| ||| ||||| ||| ||||| |
Sbjct 1784 TGTACTCCACTATCTCTGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGT 1725
Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602
|||| |||| ||||| ||||| ||| |||||||||||||
Sbjct 1724 TGCTCTTCCCGTTGCAGGCGTCCTTGTAGAGCATGTACGG 1685
>seq152719
Length=2073
Score = 93.3 bits (102), Expect = 4e-14
Identities = 152/219 (69%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964
|||||||| || | ||| ||| | || ||||| || ||||| || || |||||| ||
Sbjct 508 CAAGCGCAGCACAAGATGGATGGTGGATTCTTTCTGGATGTTATAATCTGACATGGTGCG 567
Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024
|||||| ||||| || |||| | |||| || | ||| ||||| ||||| ||||| ||
Sbjct 568 ACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCCTC 627
Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084
||||| || || ||| | | || | || ||| | || || || || | ||
Sbjct 628 CTTATCCTGGATCTTAGCTTTTACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGT 687
Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
| || ||||||||||| || || | || ||||||||
Sbjct 688 GATAGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 726
Score = 86.0 bits (94), Expect = 6e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
||||| |||| ||| ||| |||||||| || |||||||||||| | || ||
Sbjct 284 CGCAAGACCAGATGAATGCAGGACTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCG 343
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
||||| ||||| || |||| | |||| || | ||| || |||||||| |||||||| |||
Sbjct 344 TCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGAGGGATGCCTTCCTTA 403
Query 132029 TC 132030
||
Sbjct 404 TC 405
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 473480448264720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |