Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq44246 187 2e-42 seq103378 95.1 1e-14 seq152719 93.3 4e-14 >seq44246 Length=4029 Score = 187 bits (206), Expect = 2e-42 Identities = 946/1478 (64%), Gaps = 55/1478 (4%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| | || ||||| || | ||| || || | | || | ||||| ||| | | | Sbjct 1762 TTGACGATCTGGAACTCTCCTGACAGGACCCGGCGGGTGTAGATGTTGCTGGTGTAGGCC 1703 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || | ||||| || ||||| | || ||||| |||| || || ||||| |||| | Sbjct 1702 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGC 1643 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAA-AGTTTGCCAGTCCCA 147071 | || || | || |||| | ||| || ||||||| || || ||||||||| Sbjct 1642 AGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTT-CCAGTCCCA 1584 Query 147072 CA--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGA 147129 || ||| | ||||||| | |||||||||||||||||| | || ||| |||| Sbjct 1583 CAGGTCG--GTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGG 1526 Query 147130 CTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCG-CCAATTCACAGCTTGCCTCGAG 147188 ||| || |||| |||| || || | ||| ||| ||| ||||| ||||| || Sbjct 1525 GAGCCT-CGTACGTGTCGTAGGGGCCCA-GCTCGGCGGCCAGTTCGCAGCTGGCCTCCAG 1468 Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTC 147248 || | ||||| ||||| || ||| || |||| || | || || ||| || Sbjct 1467 GGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGTTCAGCAGCTGGGCCTCGGGGCTTTC 1408 Query 147249 GTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGG 147308 | || ||||| || | ||||| ||||||| ||||||| |||| ||||| || Sbjct 1407 AAAGGGGTAACGCATCAGGATGAAGGCGTCGGCCAGGCCCTGGACGCCGATACCGATCGG 1348 Query 147309 TCGATGCTTTTCGTTG--CTGCGCTTCGCGCTCGCT-ATGGGATAGTGGTTGCGATCAAT 147365 | || | |||| ||| ||| |||| | || ||| ||| || || Sbjct 1347 CCTGTGGCGCTTGTTGGACTGA---TCGGCCTCGGGCACCGGGTAGAAGTTAATCTCTAT 1291 Query 147366 AATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATA 147425 |||||||| ||||| ||| | ||||| || | | | ||||||| ||| ||| | Sbjct 1290 GATCTTGTTCAGGTTCTTCACGATCACTTTGGTCACAGACTCCAGTTTCTTGAAGTCAAA 1231 Query 147426 AGTCCCGTCTTCGAC-ACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGG 147484 ||||| || | |||||| || ||| | ||||| || |||||||| || || | Sbjct 1230 AGTCCGCTCGGGGGTGACGTAC--AT--GTTGAGAGCGATGGAGGCCAGATTACACACAG 1175 Query 147485 CCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGA 147544 | ||| ||| | | ||| | |||||||| | ||| ||||||||||| || ||| Sbjct 1174 CGACCTCATCGCCACTGGAGTATTCAACGATTTCCGTGCAGAGGTTGCTGCACTTGATGG 1115 Query 147545 CTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTC 147604 ||||| || ||||| ||||| |||| ||||| ||||||||| | ||||||||||| Sbjct 1114 TTCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCG 1055 Query 147605 CGCCGGTCTCGACTTGCGTTTCAACGAT--------AAACCTATGCAGGTCCTGCGCTCG 147656 ||| | ||| || | || | ||| | ||| ||| | ||| | | Sbjct 1054 TGCCCGACTCCGTCTGGGACTCGATGATGGCGTGCCACACC--TGCTGAGCCTTCAC--- 1000 Query 147657 CACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTC 147716 ||| |||| || |||||||| || || | ||| | | ||||||||| || Sbjct 999 CACACGCT--TGA-CCCGGCCCTCCCGCTCATATTGGGTGTAGAGCTTCTCAAACTCCTC 943 Query 147717 GCCGTAGCAATCGGCAAGGCCGGGACACT-GATGCGGACACATCAGCGACCACATGTCGT 147775 || |||| ||| | || ||||| | || | || ||||||||||| ||||| | || Sbjct 942 CCCCCAGCACTCGTCCAGCCCGGGGCTCTCGCTG-GGACACATCAGAGACCAGTCCTGGT 884 Query 147776 CCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGC--G 147833 | || | ||| ||||| || || | ||||| |||| | ||||| | | Sbjct 883 TGCTCTCCACCCTCTTCATGAACAGGTCGGGGATCCACAAGCCGTAGAAGAGATCTCTGG 824 Query 147834 CGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCGGC 147893 | || ||| ||||| ||| |||| |||| | || | | | | ||| Sbjct 823 CTCTCTGC--TCCTCCTTCCCCGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCAAA 766 Query 147894 GTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGAC 147950 |||||| || || | ||| | ||| | || || ||| || |||||||||||||| Sbjct 765 GTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGTCGCTTGTTGCCGCCCTGGTCGAC 706 Query 147951 ATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTT 148010 || ||| | ||||||| | || | || |||||| |||| ||| | | ||||||| Sbjct 705 ATAGCGTGCTGTGTTGTTGTAGACCCTCAGCATGGGGACCAGCCCGTTGGAGTTGCCGTT 646 Query 148011 GGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCC 148070 |||| ||| | ||| ||| || ||| | | ||| || || || || || Sbjct 645 GGTGCCGGCGATGTAGCTCCCGGTGGATCGGATGCAGCTGACGGCCACACCGATTCCTCC 586 Query 148071 -GCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGT 148129 |||| |||| || ||| || || | || || ||||||||| |||||||||| Sbjct 585 TGCCG-ACTTGGAGATGAGTGCACACTGCTTCAGCGTGTCGTAGATGCCCTCGATGCTGT 527 Query 148130 CGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCG---CGTTCCCGCCG 148186 ||| || | | |||| || || | | || || ||| ||||| || Sbjct 526 CGTCCTTCATGGTGAGCAGGAAGCAGCTGGAGA---GCTGAGGCCGGTTGGTTCCTGCGT 470 Query 148187 AGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAA 148246 ||| || ||||| ||||| || ||| | || | | || | || ||||| | Sbjct 469 TGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCCGAGAGCAGGTTGTAGGTCTCGA 410 Query 148247 TAGCGTCTTCGATGT-CGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGT 148305 | ||| | ||||| | |||| ||| || || | || || | ||||||||||||||| Sbjct 409 TGGCGGCGTCGATATCCGTC-TTGTGGATTCCGACCGACACCCTCATGAGCATGTGCTGC 351 Query 148306 GGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATA 148343 || || || || |||| ||||||||| || || || Sbjct 350 GGCCGCTCCGCCACTTTGCCGTTGATCTTCAGCAGGTA 313 >seq103378 Length=1867 Score = 95.1 bits (104), Expect = 1e-14 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| ||| || || | |||||| |||||| |||| ||| ||||| ||| ||||| | Sbjct 1784 TGTACTCCACTATCTCTGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGT 1725 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 |||| |||| ||||| ||||| ||| ||||||||||||| Sbjct 1724 TGCTCTTCCCGTTGCAGGCGTCCTTGTAGAGCATGTACGG 1685 >seq152719 Length=2073 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| || | ||| ||| | || ||||| || ||||| || || |||||| || Sbjct 508 CAAGCGCAGCACAAGATGGATGGTGGATTCTTTCTGGATGTTATAATCTGACATGGTGCG 567 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||| || |||| | |||| || | ||| ||||| ||||| ||||| || Sbjct 568 ACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCCTC 627 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||||| || || ||| | | || | || ||| | || || || || | || Sbjct 628 CTTATCCTGGATCTTAGCTTTTACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGT 687 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || ||||||||||| || || | || |||||||| Sbjct 688 GATAGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 726 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||| ||| ||| |||||||| || |||||||||||| | || || Sbjct 284 CGCAAGACCAGATGAATGCAGGACTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCG 343 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || |||| | |||| || | ||| || |||||||| |||||||| ||| Sbjct 344 TCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGAGGGATGCCTTCCTTA 403 Query 132029 TC 132030 || Sbjct 404 TC 405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473480448264720