Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq83969 98.7 3e-17 seq3133 98.7 3e-17 seq3132 98.7 3e-17 seq34014 95.1 4e-16 seq116291 86.0 2e-13 seq219663 78.8 3e-11 >seq83969 Length=576 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 321 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 380 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 381 CCGGGTTTCGGC 392 >seq3133 Length=356 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 81 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 140 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 141 CCGGGTTTCGGC 152 >seq3132 Length=445 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 81 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 140 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 141 CCGGGTTTCGGC 152 >seq34014 Length=516 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 196 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 137 Query 2829 CCGGGCTTCAGC 2840 ||| | ||| || Sbjct 136 CCGAGTTTCGGC 125 >seq116291 Length=414 Score = 86.0 bits (94), Expect = 2e-13 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| ||||||| ||||||||| |||||||||||||||||||||||||||||| | | Sbjct 148 GCCGAAATAGCTCATTTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 207 Query 2829 CCGGGCTTCAGC 2840 || || ||| || Sbjct 208 CCTGGTTTCGGC 219 >seq219663 Length=557 Score = 78.8 bits (86), Expect = 3e-11 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 2772 GAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCG 2831 ||| ||||||||||||||||| ||||| |||||||| ||||||||||||||| | |||| Sbjct 117 GAAATAGCTCAGTTGGGAGAGAGTTAGAGTGAAGATCGAAAGGTCCCTGGTTCGATCCCG 58 Query 2832 G 2832 | Sbjct 57 G 57 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15758501600790