Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq44246 154 2e-31 seq70662 141 1e-27 seq75492 140 5e-27 seq443314 100 4e-15 seq70661 96.9 5e-14 seq6431 91.5 2e-12 seq86481 87.8 3e-11 seq103378 86.0 9e-11 >seq44246 Length=4029 Score = 154 bits (170), Expect = 2e-31 Identities = 207/288 (72%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 259898 TCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCG 259957 ||| || ||| ||||||| || | ||||||||||| || || || || || || Sbjct 430 TCGGAGAAGTGGTTCACCCACGCCTCCCCCACGCTCTTCAACGCAGGAACCAACCGGCCT 489 Query 259958 CAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGAC 260017 ||| || ||||| ||| | |||||||| ||| |||||||||||||| ||| Sbjct 490 CAGCTCTCCAGCTGCTTCCTGCTCACCATGAAGGACGACAGCATCGAGGGCATCTACGAC 549 Query 260018 ACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACAC 260077 ||||| |||||||| || |||||||||||| |||| || || |||||| | |||| | Sbjct 550 ACGCTGAAGCAGTGTGCACTCATCTCCAAGTCGGCAGGAGGAATCGGTGTGGCCGTCAGC 609 Query 260078 AAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTG 260137 | || || | || |||| | || |||||||||||| | |||||||| || || Sbjct 610 TGCATCCGATCCACCGGGAGCTACATCGCCGGCACCAACGGCAACTCCAACGGGCTGGTC 669 Query 260138 CCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185 |||||||| | || | ||| |||| || ||||| ||||||||| || Sbjct 670 CCCATGCTGAGGGTCTACAACAACACAGCACGCTATGTCGACCAGGGC 717 Score = 107 bits (118), Expect = 3e-17 Identities = 292/450 (65%), Gaps = 26/450 (6%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 |||||| |||||| |||||||| ||| |||||||| ||||||||| ||| | Sbjct 715 GGCGGCAACAAGCGACCCGGCGCCTTCGCCATGTACCTGGAGCCGTGGCACTTTGACGTG 774 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || ||| ||||| || || |||||| |||| | ||||| | ||| | || | Sbjct 775 TTCGACTTCCTGGAGCTGAAGAAGAAC-ACGGGGAAGGAGGAGCAGA-----GAGCCAGA 828 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 |||||||| |||||| |||||| ||||||||| ||| | ||| || | || Sbjct 829 GATCTCTTCTACGGCTTGTGGATCCCCGACCTGTTCATGAAGAGGGTGGAGAGCAACCAG 888 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCC 262027 |||||||| || | || || |||| ||||| ||| |||| |||| || | || Sbjct 889 GACTGGTCTCTGATGTGTCCCAGCGAGAGCCCCGGGCTGGACGAGTGCTGGGGGGAGGAG 948 Query 262028 TTTGA---------CGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGTC 262078 ||||| | ||| |||||| ||| || Sbjct 949 TTTGAGAAGCTCTACACCCAATATGAGCGGGAGGGCCGGGTCAA------GCGT---GTG 999 Query 262079 GTGCCCGCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCC 262138 ||| || | ||| | ||| ||||| ||| | |||| | ||| | |||||||| Sbjct 1000 GTGAAGGCTCAGCAGGTGTGGCACGCCATCATCGAGTCCCAGACGGAGTCGGGCACGCCG 1059 Query 262139 TACATGGTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACG 262198 |||||| | ||||| |||||| |||| || |||||||||||||||||||| |||| Sbjct 1060 TACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGAACCATC 1119 Query 262199 ACAGAG-GCCAACCTGTGCACCGAGATCGT 262227 | || | |||||| ||||| || ||||| Sbjct 1120 A-AGTGCAGCAACCTCTGCACGGAAATCGT 1148 Score = 104 bits (114), Expect = 3e-16 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 262913 AGCATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGA 262972 |||| ||| || | ||| |||| |||| | |||||||||||| | || | |||| Sbjct 1618 AGCACGGCGTGAGGAACAGCCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGA 1677 Query 262973 TCCTGGGCAACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGC 263032 |||||||||||| |||| | |||||| | ||| |||||||||||||| ||||| || | Sbjct 1678 TCCTGGGCAACAACGAGTCCATCGAGGCCTACACCAGCAACATCTACACCCGCCGGGTCC 1737 Query 263033 TCTCGGGCGACTTTACCGTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCC 263092 | || || || || | ||||||| ||| ||| ||||| | || || | | || | Sbjct 1738 TGTCAGGAGAGTTCCAGATCGTCAACCCCCATCTGCTCAAGGACCTGACGGAGAGAGGGC 1797 Query 263093 TGTGG 263097 ||||| Sbjct 1798 TGTGG 1802 >seq70662 Length=316 Score = 141 bits (156), Expect = 1e-27 Identities = 166/223 (74%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| || |||| |||||||| | ||||| Sbjct 100 TACAAGGTGCTGAAGCAGGTCCACCCCGACAC---TGGGATCTCCTCCAA---GGCCATG 153 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || | |||||| |||| ||||||| | |||||| ||| Sbjct 154 GGCATCATGAACTCCTTCGTGAGCGACATCTTCGAGCGCATCGCCGGTGAGGCCTCTCGT 213 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | ||||| ||||||||||| ||| Sbjct 214 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATTCAGACCGCCGTCCGC 273 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGG 725136 ||| | ||| ||| || ||||| | |||||||| || |||| Sbjct 274 CTGCTGCTGCCCGGGGAGCTGGCTAAACACGCCGTGTCTGAGG 316 >seq75492 Length=1479 Score = 140 bits (154), Expect = 5e-27 Identities = 169/229 (74%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| ||| |||| ||| |||| ||||| Sbjct 1125 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCAG-----CATC-TCCTTCAAGGCCATG 1072 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 | |||||||||| || || | ||||| |||| ||||||| | |||||| ||| Sbjct 1071 GAGGTCATGAACTCCTTCGTGATGGACATCTTCGAGCGCATCGCCGGAGAGGCCTCCCGC 1012 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||| | | ||| ||| | | || || |||||||||||||| ||| Sbjct 1011 CTGGCTCACTACAACAATCACTCCACCATCACCTCCCGGGATATCCAGACCGCCGTCCGC 952 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||| |||||||| ||||||||||||| Sbjct 951 ATGCTGCTGCCCGGGGAGCTGGCATTACACGCCGTGTCCGAGGGCACCA 903 >seq443314 Length=301 Score = 100 bits (110), Expect = 4e-15 Identities = 113/150 (75%), Gaps = 6/150 (4%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| |||| ||| |||| ||||| Sbjct 156 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 209 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || | |||||| |||| ||||||| | |||||| ||| Sbjct 210 GGCATCATGAACTCCTTCGTGAGCGACATCTTCGAGCGCATCGCCGGGGAGGCCTCCCGC 269 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATC 725063 ||||| | || |||||||||| ||| ||| Sbjct 270 CTGGCTCACTACAACAAGCGCTCCACCATC 299 >seq70661 Length=246 Score = 96.9 bits (106), Expect = 5e-14 Identities = 112/150 (75%), Gaps = 6/150 (4%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| || |||| |||||||| | ||||| Sbjct 100 TACAAGGTGCTGAAGCAGGTCCACCCCGACAC---TGGGATCTCCTCCAA---GGCCATG 153 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || | |||||| |||| ||||||| | |||||| ||| Sbjct 154 GGCATCATGAACTCCTTCGTGAGCGACATCTTCGAGCGCATCGCCGGTGAGGCCTCTCGT 213 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATC 725063 ||||| | || |||||||||| ||| ||| Sbjct 214 CTGGCTCACTACAACAAGCGCTCCACCATC 243 >seq6431 Length=248 Score = 91.5 bits (100), Expect = 2e-12 Identities = 112/150 (75%), Gaps = 6/150 (4%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| || |||| |||||||| || ||||| Sbjct 102 TACAAGGTGCTGAAGCAGGTCCACCCCGACAC---TGGGATCTCCTCCAA--AG-CCATG 155 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || | |||||| |||| ||||||| | |||||| ||| Sbjct 156 GGCATCATGAACTCCTTCGTGAGCGACATCTTCGAGCGCATCGCCGGTGAGGCCTCTCGT 215 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATC 725063 ||||| | | |||||||||| ||| ||| Sbjct 216 CTGGCTCATTACAACAAGCGCTCCACCATC 245 >seq86481 Length=4042 Score = 87.8 bits (96), Expect = 3e-11 Identities = 88/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 1813106 CGGTTAAAGCCGTGCCGCGTGACGGCCACCAC-TGAGCCGCGGCAACACATGGTGTCGGT 1813164 ||||| | |||||| ||||||| ||||| || ||| |||||||| ||||||||| Sbjct 701 CGGTTGATGCCGTGACGCGTGATGGCCATCAGGTGA-CCGCGGCAGGTCATGGTGTCACA 759 Query 1813165 GGCCAGCGCAAAGTGGCGGTCGTTGACATAGGTGCCGTCAAAGGAGATCACG 1813216 | ||| || ||||| |||| |||||| |||| |||||||||||||| ||| Sbjct 760 GAGCAGAGCCAAGTGACGGTAGTTGACGTAGGAACCGTCAAAGGAGATGACG 811 >seq103378 Length=1867 Score = 86.0 bits (94), Expect = 9e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| | |||| ||||| ||| | | || | || || || ||||| |||||| ||||| Sbjct 1640 CAGCTGTGGTACGCCATCATCGAGTCACAGACTGAAACGGGTACGCCGTACATGCTCTAC 1699 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGCCAAC 262210 ||||||||| |||| || |||||||||||||| ||||| |||| | | ||| Sbjct 1700 AAGGACGCCTGCAACGGGAAGAGCAACCAGCAGAATCTGGGAACCATCAAATCCAGCAAT 1759 Query 262211 CTGTGCACCGAGATCGT 262227 |||||||| ||||| || Sbjct 1760 CTGTGCACAGAGATAGT 1776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7127125566227324