Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq152719 120 3e-22 seq6427 105 6e-18 seq152718 98.7 9e-16 seq59939 95.1 1e-14 >seq152719 Length=2073 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || ||||| ||||| | || ||| || | || ||||||||||| || ||||| Sbjct 536 TCTTTCTGGATGTTATAATCTGACATGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAG 595 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | ||| | || |||||| ||| |||||| || | | | Sbjct 596 ATCAGCCTCTGCTGATCAGGAGGGATGCCCTCCTTATCCTGGATCTTAGCTTTTACATTC 655 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||||| | ||| ||||||| ||||| || ||||| |||| || |||||| Sbjct 656 TCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATAGTCTTACCAGTCAGGGTCTTCACA 715 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 716 AAGATCTGCAT 726 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| |||| | || || |||| ||||||||||| || ||||| Sbjct 79 CTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAA 138 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | ||| | || |||||| ||| |||||| || | | | Sbjct 139 GATCAGCCTCTGCTGATCAGGAGGGATGCCCTCCTTATCCTGGATCTTAGCTTTGACATT 198 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | ||| ||||||| ||||| | ||||| |||| || ||||| Sbjct 199 CTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATGGACTTACCAGTCAGGGTCTTCAC 258 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 259 AAAGATCTGCAT 270 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| |||| | || || |||| ||||||||||| || ||||| Sbjct 307 CTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAA 366 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | ||| | || ||||| ||| |||||| || | | | Sbjct 367 GATGAGCCTCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTAGCTTTGACATT 426 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| | | ||| ||| ||| ||||| || || || || | || ||||| Sbjct 427 CTCAATGGTGTCGTTGGGTTCAACCACCAGAGTGATAGTCTTGCCTGTGAGGGTCTTCAC 486 Query 35725 AAATATCTGCAT 35736 ||| ||||| || Sbjct 487 AAAGATCTGAAT 498 >seq6427 Length=3314 Score = 105 bits (116), Expect = 6e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| || | || ||||||||||| || ||||| Sbjct 3143 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 3202 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | |||| || ||||||||| |||||| ||| | | | Sbjct 3203 GATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 3262 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 | | | |||||||| | || ||||||| ||||| || || ||||| Sbjct 3263 TTCGATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCCGT 3310 >seq152718 Length=3078 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||| |||| |||| | || || | || ||||||||||| || ||||| Sbjct 2182 CTCTTTCTGGATGCTGTAGTCGGAGAGAGTGCGACCATCTTCCAGCTGCTTGCCGGCAAA 2241 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || | ||| || ||||| | || ||||| ||| ||||| || | | | Sbjct 2242 GATCAGCCTGTACTGTTCAGAAGGGATGCCTTCCTTATCCTGAATCTTAACTTTGACATT 2301 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | ||| ||||||| ||||| || ||||| |||| || ||||| Sbjct 2302 CTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATGGTCTTACCAGTCAGGGTCTTCAC 2361 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 2362 AAAGATCTGCAT 2373 >seq59939 Length=800 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || ||||||||||| || ||||| |||| || |||||| || | |||| || |||||| Sbjct 11 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTG 70 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 ||| |||||| ||| | | || | | ||||| || | || ||||| | ||||| Sbjct 71 TCCTGGATCTTGGCCTTGACATTTTCGATTGTGTCACTAGGCTCAACCTCGAGGGTGATG 130 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || ||||| | || |||||||| |||||||| Sbjct 131 GTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447832438270160