Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_026610.2 Length=56637 Score E Sequences producing significant alignments: (Bits) Value seq511475 178 5e-40 seq268629 134 5e-27 >seq511475 Length=721 Score = 178 bits (196), Expect = 5e-40 Identities = 323/472 (68%), Gaps = 22/472 (5%) Strand=Plus/Plus Query 8846 CGCCCTCACTTCATCCTTACTGGTCCAAGTGGTTCAGGTAAGTCCCATAT-----CATCC 8900 || ||||||||||| | ||||| ||||||||||||||||||||||| || |||| Sbjct 48 CGTCCTCACTTCATTTTAACTGGACCAAGTGGTTCAGGTAAGTCCCACATTATTGCATCA 107 Query 8901 AGAGCCTA-GCCTCGGAGTTCAAGGTGGGTTACCTAGAGATCAACGCGGCGCAGTTAACT 8959 | || | | | || || || | | | ||||| ||||| || |||||||| Sbjct 108 ATTGCAGAAGAATTAGATTTAAACTT------CATTGAGATTAACGCAGCTCAGTTAACC 161 Query 8960 AAGGAAGGTACTTCCGGTAATAGCCTGTCCAAGGCCTTAGCCCCGCTAGCCCA-----GA 9014 || ||||| ||| ||||||| ||| | || || |||| || | || || | Sbjct 162 AAAGAAGGCACTGCCGGTAACAGCTTAAGTAAAGCATTAGGTCCTGTTGCACAATCTGGT 221 Query 9015 GCCAAGCAACCCTGACACTTTGCTTTGTCGACGAGTTCGATAAGCTGTTTATCTCAGGCA 9074 | ||| | ||| || || || |||||||| || ||||| || || || || | Sbjct 222 GGTCAGCCA-----ACAGTTGTATTCGTTGACGAGTTTGACAAGCTATTCATTTCTGGTA 276 Query 9075 ACACAAATAGCGAGTTAGCCCATGAAACCACCAATGGTGTCCAGAATGAATTCCTTCGCG 9134 |||| || | |||||||| ||||| || ||||| ||||| || ||||| ||| | | Sbjct 277 ACACCAACTGTGAGTTAGCTCATGAGACAACCAACGGTGTGCAAAATGAGTTCTTAACAG 336 Query 9135 TCCTTGAATCTAAGACGACGTCGGTTTTCGGGGACTACGGCAAGTACATCCAAGCGCCAG 9194 | |||||||| | || | || | ||||| || ||||| |||||| | | | | | Sbjct 337 TACTTGAATCAGATACAGCATCAATCTTCGGTGAGTACGGTAAGTACTTAAACGTACAAA 396 Query 9195 TCGATAATGTGCTGTTCGTCTTCGCAGGAGCTTTCAACGGTGAAGAGAATATTACAATCG 9254 | ||||| ||||| || || ||||| || || ||||| || |||| |||| || || | Sbjct 397 TTGATAACGTGCTATTTGTATTCGCTGGTGCGTTCAATGGCCAAGATGATATCACCATTG 456 Query 9255 ACCGCCTACGTGAGTTCGGCCTCAAAACAGAGTTCCTCGGACGAGTAGGCCT 9306 | |||||||||||| || | ||||| |||||| | || || || || || Sbjct 457 ATAACCTACGTGAGTTTGGTGTTAAAACCGAGTTCTTAGGGCGTGTTGGTCT 508 >seq268629 Length=1446 Score = 134 bits (148), Expect = 5e-27 Identities = 242/351 (69%), Gaps = 2/351 (1%) Strand=Plus/Plus Query 8954 TTAACTAAGGAAGGTACTTCCGGTAATAGCCTGTCCAAGGCCTTAGCCCCGCTAGCCCAG 9013 |||||||| |||||||| ||| || || | || ||||| | | || |||| | Sbjct 403 TTAACTAAAGAAGGTACAAGCGGCAACAGTTTATCTAAGGCACTTGGACCACTAGGTAAT 462 Query 9014 A-GCCAAGCAACCCTGACACTTTGCTTTGTCGACGAGTTCGATAAGCTGTTTATCTCAGG 9072 | | ||| |||| ||| || ||||| || |||||||| ||||| || || ||||| Sbjct 463 ATGGGCAGCGGTCCTGT-ACTGTGTTTTGTTGATGAGTTCGACAAGCTATTCATATCAGG 521 Query 9073 CAACACAAATAGCGAGTTAGCCCATGAAACCACCAATGGTGTCCAGAATGAATTCCTTCG 9132 ||| ||| || ||||| || |||| ||| || ||||| ||||| || |||||| Sbjct 522 TAACCATAATTCTGACTTAGCACACGAAAGCACTAACGGTGTACAGAACGAGTTCCTTAA 581 Query 9133 CGTCCTTGAATCTAAGACGACGTCGGTTTTCGGGGACTACGGCAAGTACATCCAAGCGCC 9192 || ||||| | || | |||||||| || ||||| ||||| || | || Sbjct 582 GGTACTTGAGAGCGACACAGCAAGCGTTTTCGGTGATTACGGTAAGTATGTCAACATTCC 641 Query 9193 AGTCGATAATGTGCTGTTCGTCTTCGCAGGAGCTTTCAACGGTGAAGAGAATATTACAAT 9252 ||| | || || || ||| |||| |||||||| || ||||||||||| |||| || Sbjct 642 AGTAAAGAACGTTCTATTCATCTTTGCAGGAGCGTTTAACGGTGAAGAAGATATCGACAT 701 Query 9253 CGACCGCCTACGTGAGTTCGGCCTCAAAACAGAGTTCCTCGGACGAGTAGG 9303 ||||| |||| || | || | || ||||||||| | || |||||||| Sbjct 702 TGACCGATTACGGGAACTAGGTATTAAGACAGAGTTCTTAGGTCGAGTAGG 752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 179986570267476