Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_026610.2
Length=56637
Score E
Sequences producing significant alignments: (Bits) Value
seq511475 178 5e-40
seq268629 134 5e-27
>seq511475
Length=721
Score = 178 bits (196), Expect = 5e-40
Identities = 323/472 (68%), Gaps = 22/472 (5%)
Strand=Plus/Plus
Query 8846 CGCCCTCACTTCATCCTTACTGGTCCAAGTGGTTCAGGTAAGTCCCATAT-----CATCC 8900
|| ||||||||||| | ||||| ||||||||||||||||||||||| || ||||
Sbjct 48 CGTCCTCACTTCATTTTAACTGGACCAAGTGGTTCAGGTAAGTCCCACATTATTGCATCA 107
Query 8901 AGAGCCTA-GCCTCGGAGTTCAAGGTGGGTTACCTAGAGATCAACGCGGCGCAGTTAACT 8959
| || | | | || || || | | | ||||| ||||| || ||||||||
Sbjct 108 ATTGCAGAAGAATTAGATTTAAACTT------CATTGAGATTAACGCAGCTCAGTTAACC 161
Query 8960 AAGGAAGGTACTTCCGGTAATAGCCTGTCCAAGGCCTTAGCCCCGCTAGCCCA-----GA 9014
|| ||||| ||| ||||||| ||| | || || |||| || | || || |
Sbjct 162 AAAGAAGGCACTGCCGGTAACAGCTTAAGTAAAGCATTAGGTCCTGTTGCACAATCTGGT 221
Query 9015 GCCAAGCAACCCTGACACTTTGCTTTGTCGACGAGTTCGATAAGCTGTTTATCTCAGGCA 9074
| ||| | ||| || || || |||||||| || ||||| || || || || |
Sbjct 222 GGTCAGCCA-----ACAGTTGTATTCGTTGACGAGTTTGACAAGCTATTCATTTCTGGTA 276
Query 9075 ACACAAATAGCGAGTTAGCCCATGAAACCACCAATGGTGTCCAGAATGAATTCCTTCGCG 9134
|||| || | |||||||| ||||| || ||||| ||||| || ||||| ||| | |
Sbjct 277 ACACCAACTGTGAGTTAGCTCATGAGACAACCAACGGTGTGCAAAATGAGTTCTTAACAG 336
Query 9135 TCCTTGAATCTAAGACGACGTCGGTTTTCGGGGACTACGGCAAGTACATCCAAGCGCCAG 9194
| |||||||| | || | || | ||||| || ||||| |||||| | | | | |
Sbjct 337 TACTTGAATCAGATACAGCATCAATCTTCGGTGAGTACGGTAAGTACTTAAACGTACAAA 396
Query 9195 TCGATAATGTGCTGTTCGTCTTCGCAGGAGCTTTCAACGGTGAAGAGAATATTACAATCG 9254
| ||||| ||||| || || ||||| || || ||||| || |||| |||| || || |
Sbjct 397 TTGATAACGTGCTATTTGTATTCGCTGGTGCGTTCAATGGCCAAGATGATATCACCATTG 456
Query 9255 ACCGCCTACGTGAGTTCGGCCTCAAAACAGAGTTCCTCGGACGAGTAGGCCT 9306
| |||||||||||| || | ||||| |||||| | || || || || ||
Sbjct 457 ATAACCTACGTGAGTTTGGTGTTAAAACCGAGTTCTTAGGGCGTGTTGGTCT 508
>seq268629
Length=1446
Score = 134 bits (148), Expect = 5e-27
Identities = 242/351 (69%), Gaps = 2/351 (1%)
Strand=Plus/Plus
Query 8954 TTAACTAAGGAAGGTACTTCCGGTAATAGCCTGTCCAAGGCCTTAGCCCCGCTAGCCCAG 9013
|||||||| |||||||| ||| || || | || ||||| | | || |||| |
Sbjct 403 TTAACTAAAGAAGGTACAAGCGGCAACAGTTTATCTAAGGCACTTGGACCACTAGGTAAT 462
Query 9014 A-GCCAAGCAACCCTGACACTTTGCTTTGTCGACGAGTTCGATAAGCTGTTTATCTCAGG 9072
| | ||| |||| ||| || ||||| || |||||||| ||||| || || |||||
Sbjct 463 ATGGGCAGCGGTCCTGT-ACTGTGTTTTGTTGATGAGTTCGACAAGCTATTCATATCAGG 521
Query 9073 CAACACAAATAGCGAGTTAGCCCATGAAACCACCAATGGTGTCCAGAATGAATTCCTTCG 9132
||| ||| || ||||| || |||| ||| || ||||| ||||| || ||||||
Sbjct 522 TAACCATAATTCTGACTTAGCACACGAAAGCACTAACGGTGTACAGAACGAGTTCCTTAA 581
Query 9133 CGTCCTTGAATCTAAGACGACGTCGGTTTTCGGGGACTACGGCAAGTACATCCAAGCGCC 9192
|| ||||| | || | |||||||| || ||||| ||||| || | ||
Sbjct 582 GGTACTTGAGAGCGACACAGCAAGCGTTTTCGGTGATTACGGTAAGTATGTCAACATTCC 641
Query 9193 AGTCGATAATGTGCTGTTCGTCTTCGCAGGAGCTTTCAACGGTGAAGAGAATATTACAAT 9252
||| | || || || ||| |||| |||||||| || ||||||||||| |||| ||
Sbjct 642 AGTAAAGAACGTTCTATTCATCTTTGCAGGAGCGTTTAACGGTGAAGAAGATATCGACAT 701
Query 9253 CGACCGCCTACGTGAGTTCGGCCTCAAAACAGAGTTCCTCGGACGAGTAGG 9303
||||| |||| || | || | || ||||||||| | || ||||||||
Sbjct 702 TGACCGATTACGGGAACTAGGTATTAAGACAGAGTTCTTAGGTCGAGTAGG 752
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 179986570267476
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |