Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq44246 194 2e-44 seq152719 107 2e-18 seq103378 89.7 5e-13 seq6427 87.8 2e-12 >seq44246 Length=4029 Score = 194 bits (214), Expect = 2e-44 Identities = 910/1428 (64%), Gaps = 29/1428 (2%) Strand=Plus/Plus Query 7524 CTACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGT 7583 |||| || |||| ||||||||| || ||||| || || |||||||| || | || Sbjct 312 CTACCTGCTGAAGATCAACGGCAAAGTGGCGGAGCGGCCGCAGCACATGCTCATGAGGGT 371 Query 7584 GGCGGTGGGCATTCAC--GGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATG 7641 | |||| || || ||| | || || || ||||||||| | || || ||| | || | Sbjct 372 GTCGGTCGGAATCCACAAGACG--GATATCGACGCCGCCATCGAGACCTACAACCTGCTC 429 Query 7642 TCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCT 7701 || ||| ||| || ||||| || ||||| | || ||| || || ||| |||| Sbjct 430 TCGGAGAAGTGGTTCACCCACGCCTCCCCCACGCTCTTCAACGCAGGAACCAACCGGCCT 489 Query 7702 CAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAAC 7761 || | ||| || || |||| |||||| || ||||||||||| ||||| ||| || Sbjct 490 CAGCTCTCCAGCTGCTTCCTGCTCACCATGAAGGACGACAGCATCGAGGGCATCTACGAC 549 Query 7762 ACGCTGCGCGATTGCGCCAATATTTCCAAATACGGC-GGCGGAATAGGTCTGAACGTAAA 7820 |||||| | || || || ||||| | |||| || ||||| ||| || ||| | Sbjct 550 ACGCTGAAGCAGTGTGCACTCATCTCCAAGT-CGGCAGGAGGAATCGGTGTGGCCGTCAG 608 Query 7821 CGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGA 7880 | | | || ||| ||| ||| ||||| ||||||||| || ||| ||| | | Sbjct 609 CTGCATCCGATCCACCGGGAGCTACATCGCCGGCACCAACGGCAACTCCAACGGGCTGGT 668 Query 7881 GCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGG---AAAGCG 7937 |||||| || | || | ||| ||| | | || |||| |||||||| || ||||| Sbjct 669 CCCCATGCTGAGGGTCTACAACAACACAGCACGCTATGTCGACCAGGGCGGCAACAAGCG 728 Query 7938 CAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAA 7997 |||||| ||||| || |||||||||||||| ||| | | || | || | Sbjct 729 ACCCGGCGCCTTCGCCATGTACCTGGAGCCGTGGCACTTTGACGTGTTCGACTTCCTGGA 788 Query 7998 TCTGCGTCGCAACATGGGTTGCGAAGA-CAGCAAAGCGCGCGATCTATTCTTCGGATTGT 8056 ||| |||| ||| || || ||| | ||| | ||||| |||| ||| |||| Sbjct 789 GCTGAAGAAGAACACGGGGAAGGAGGAGCAG-AGAGCCAGAGATCTCTTCTACGGCTTGT 847 Query 8057 GGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCC 8116 || | ||||| ||||| |||| | | || | | || | ||||| || ||||| | Sbjct 848 GGATCCCCGACCTGTTCATGAAGAGGGTGGAGAGCAACCAGGACTGGTCTCTGATGTGTC 907 Query 8117 CCGATCG-TTGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAA 8175 || | || |||| | | | | || | ||||| | | |||| Sbjct 908 CC-AGCGAGAGCCCCGGGCTGGACGAGTGCTGGGGGGAGGAGTTTGAGAAGCTCTACACC 966 Query 8176 CAATACGAACACGACGGCGCGTACGTGCGGCAAGTGAAAGCGCGCGACCTGCACCGCGCC 8235 ||||| || | || ||| | | ||| ||||| || | | || | |||| Sbjct 967 CAATATGAGCGGGAGGGCCGGGTCAAGCGTGTGGTGAAGGCTCAGCAGGTGTGGCACGCC 1026 Query 8236 ATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAAC 8295 || ||||| | || | || | || | |||||||||||||||||||||||| |||||| Sbjct 1027 ATCATCGAGTCCCAGACGGAGTCGGGCACGCCGTACATGCTGTACAAAGACGCCTGCAAC 1086 Query 8296 GCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATT 8355 || ||||| || ||| |||| ||||| |||||||| || ||| | ||||| Sbjct 1087 AGGAAGAGCAACCAGCAGAACCTGGGAACCATCAAGTGCAGCAACCTCTGCACGGAAATC 1146 Query 8356 GTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAAAC 8415 || | ||| | ||| || || || || || ||||| || || | | | ||| Sbjct 1147 GTTGAATACTCCAGTGGCGATGAGGTCGCTGTGTGTAATCTGGCCTCCATCGCTCTCAAC 1206 Query 8416 GCGTTCGTTGATCGACGCTCAAAC--ACTTACGACTTTGAACAATTGAAAAACGCCGTG- 8472 || ||| || | | | | |||| ||||| | || || | | ||| Sbjct 1207 ATGTACGT-----CACCCCCGAGCGGACTTTTGACTTCAAGAAACTG---GAGTCTGTGA 1258 Query 8473 --CAAGTGACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAG 8530 |||||| || || | | ||||| || | || || || || || | Sbjct 1259 CCAAAGTGATCGTGAAGAACCTGAACAAGATCATAGAGATTAACTTCTACCCGGTGCCCG 1318 Query 8531 AAGCGCGCGTA-TCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCC 8589 | || || | || |||| ||||||||| || | || | ||||| || || |||||| Sbjct 1319 AGGC-CGATCAGTCCAACAAGCGCCACAGGCCGATCGGTATCGGCGTCCAGGGCCTGGCC 1377 Query 8590 GACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATA 8649 ||||| || | || |||| ||||| ||||||| || || | |||| ||||| Sbjct 1378 GACGCCTTCATCCTGATGCGTTACCCCTTTGAAAGCCCCGAGGCCCAGCTGCTGAACATC 1437 Query 8650 AAAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAGAA 8709 | || || || | || |||| ||| | || |||||||| |||| ||| || Sbjct 1438 CAGATCTTTGAGACCATCTACTACGCCGCCCTGGAGGCCAGCTGCGAACTGGCCGCCGAG 1497 Query 8710 TTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGAC 8769 ||||| | ||||| |||||| ||| ||| | |||| || || | || |||||| Sbjct 1498 CTGGGCCCCTACGACACGTACG-AGGCTCCCCCGTCAGCAAGGGCATCCTCCAGTACGAC 1556 Query 8770 ATGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCT 8829 |||||| | ||||||||| ||||| | |||| |||| || || || Sbjct 1557 ATGTGGGAGAAGACGCCCACCGACCTGTGGGACTGGAAGCTGCTGAAGGAGAAGATCGCC 1616 Query 8830 CAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAA 8889 | ||| || | || ||| || |||| |||||||| ||| | || || || Sbjct 1617 AAGCACGGCGTGAGGAACAGCCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAG 1676 Query 8890 ATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTAC 8937 || |||| |||||||| ||| | ||| | | ||||| |||| | ||| Sbjct 1677 ATCCTGGGCAACAACGAGTCCATCGAGGCCTACACCAGCAACATCTAC 1724 >seq152719 Length=2073 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||||| || || | ||| || || || ||||| || || || |||||||||||| Sbjct 44 CCTCCTCTCAGGCGGAGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAG 103 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| ||||| ||||| |||| | ||||||||| || || Sbjct 104 AGAGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGG 163 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || |||||| || | |||||| | ||| || Sbjct 164 ATGCCCTCCTTATCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCGCTGGGTTCAACC 223 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| |||| ||||| || | || || || || || ||||| Sbjct 224 TCCAGAGTGATGGACTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 270 >seq103378 Length=1867 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 8232 CGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTG 8291 |||||| ||||| | || | ||||| |||| |||||||||||| ||||| ||||| || Sbjct 1651 CGCCATCATCGAGTCACAGACTGAAACGGGTACGCCGTACATGCTCTACAAGGACGCCTG 1710 Query 8292 CAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGA 8351 ||||| || ||||| || || |||| ||||| | ||||||||||||| | || Sbjct 1711 CAACGGGAAGAGCAACCAGCAGAATCTGGGAACCATCAAATCCAGCAATCTGTGCACAGA 1770 Query 8352 AATTGTACAGTACA 8365 || || |||||| Sbjct 1771 GATAGTGGAGTACA 1784 >seq6427 Length=3314 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || || | || || || || ||||| ||||| || |||||||||||| Sbjct 3108 CCGCCTCTCAGACGGAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 3167 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | ||||||||| || || Sbjct 3168 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGA 3227 Query 134607 ATGCCTTCTTTTTCTTGAATTTT 134629 |||||||| || || || || || Sbjct 3228 ATGCCTTCCTTGTCCTGGATCTT 3250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 502078551625040