Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq509954 178 1e-39 seq24926 82.4 8e-11 >seq509954 Length=433 Score = 178 bits (196), Expect = 1e-39 Identities = 248/348 (71%), Gaps = 0/348 (0%) Strand=Plus/Plus Query 110914 GCTCAAGACCTTAAGGCGATTCATGGCTTGGATGCTGAGACCGAACTGGCTAACATCCTC 110973 ||||| || | || || | ||||||||||| || || ||||| || || || || Sbjct 3 GCTCAGGATATGAAAGCTGTACATGGCTTGGACGCAGAAGAAGAACTTGCAAATATTCTT 62 Query 110974 AGCACTGAAATCCTTGCTGAAATCAACCGTGAAGTTGTTCGTACCATCTACACAAACGCT 111033 |||||||| ||||| ||||| |||||||| | |||||||| | || ||| || Sbjct 63 TCAACTGAAATTCTTGCAGAAATTAACCGTGAGCTAATTCGTACCGTATATGCAACTGCA 122 Query 111034 GTTCCTGGTGCTCAGAACAATACCGCTAACGCTGGTATCTTTGACCTTGACGTTGACTCC 111093 |||||||| || | | | || |||||||||||||| || | ||||| || | Sbjct 123 AAACCTGGTGCACAAACTGGTTCAGCAAACGCTGGTATCTTCGATTTAGACGTAGATGCA 182 Query 111094 AACGGTCGTTGGTCTGTTGAGAAGTTCAAAGGACTTCTGTTCCAGATTGAGCGCGATTCT 111153 || ||||| ||||| || || || |||||||||||| ||||||| ||||| || ||| || Sbjct 183 AATGGTCGCTGGTCAGTAGAAAAATTCAAAGGACTTATGTTCCAAATTGAACGTGATGCT 242 Query 111154 AACGCCATCGGTCAGCAAACTCGTCGTGGCAAGGGCAACATCCTGATTTGTTCTGCCGAC 111213 ||| |||| | | |||| | ||||| || || ||| | | || ||||| | ||| Sbjct 243 AACCAAATCGCTAAAGAAACCAGACGTGGTAAAGGTAACTTTATTATCTGTTCATCTGAC 302 Query 111214 GTTGCTTCTGCACTGGGTATGGCTGGTGTACTTGATTACACTCCTGCT 111261 || ||||||||| ||| | ||||| | ||||||| | | |||||| Sbjct 303 GTAGCTTCTGCATTGGCTGCTGCTGGAATCCTTGATTTCGCACCTGCT 350 >seq24926 Length=5984 Score = 82.4 bits (90), Expect = 8e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 157437 CAGTAGCTCAGATGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCAGGTTCGAGTCCT 157496 ||||||||||| ||||||||||| | ||||||||||| | |||||||||||||| |||| Sbjct 5765 CAGTAGCTCAGTTGGATAGAGCACCCGCCTTCTAAGCGGGTGGTCGCAGGTTCGAATCCT 5824 Query 157497 GCC 157499 ||| Sbjct 5825 GCC 5827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555828744112400