Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq509954 131 2e-25 seq292165 86.0 9e-12 >seq509954 Length=433 Score = 131 bits (144), Expect = 2e-25 Identities = 293/434 (68%), Gaps = 7/434 (2%) Strand=Plus/Plus Query 106021 GCTCAGGATCTCAAAGCGATCCACGGTCTAAACGCCGAAGCTGAACTATCTAACATCCTC 106080 ||||||||| | ||||| | || || | |||| |||| ||||| | || || || Sbjct 3 GCTCAGGATATGAAAGCTGTACATGGCTTGGACGCAGAAGAAGAACTTGCAAATATTCTT 62 Query 106081 GCCTCTGAAATTCTTTCAGAGATCAACAGAGAAGTTGTTAGAAC--TATCTACAAGTCAG 106138 | ||||||||||| |||| || ||| | || | || | || ||| | ||| | | Sbjct 63 TCAACTGAAATTCTTGCAGAAATTAACCGTGAGCTAATTCGTACCGTATATGCAACT--G 120 Query 106139 CTGTATTCGGTGCTCAGAACAACGT-AGCCACTCCTGGTGTATTTGACCTAGACGTTGAT 106197 | | ||||| || ||| | ||| | ||||| | || || ||||||| ||| Sbjct 121 CAAAACCTGGTGCACA-AACTGGTTCAGCAAACGCTGGTATCTTCGATTTAGACGTAGAT 179 Query 106198 TCCAACGGTAGATGGTCAGTTGAGAAGTTCAAAGGACTTATCTTCCAGATCGAAAGAGAC 106257 | || ||| | |||||||| || || |||||||||||||| ||||| || ||| | || Sbjct 180 GCAAATGGTCGCTGGTCAGTAGAAAAATTCAAAGGACTTATGTTCCAAATTGAACGTGAT 239 Query 106258 GCTAACGCGATCGCGCAACAAACTCGTAGAGGAAAGGGTAACTTCATCCTTTGTTCCGCG 106317 |||||| ||||| || |||| | | || || |||||||| || | ||||| | Sbjct 240 GCTAACCAAATCGCTAAAGAAACCAGACGTGGTAAAGGTAACTTTATTATCTGTTCATCT 299 Query 106318 GATGTTGCTTCAGCTCTAACCATGGCTGGTGTACTTGACTACACCCCAGCACTCAACGCT 106377 || || ||||| || | | ||||| | ||||| | | | || || || || Sbjct 300 GACGTAGCTTCTGCATTGGCTGCTGCTGGAATCCTTGATTTCGCACCTGCTATCTCTGCA 359 Query 106378 AACCT-TAACGTTGATGACACCGGTAACACCTTCGCTGGTGTTCTACAAGGTAAGTATAG 106436 || || || || ||||| |||||||| || || |||||||||||| | ||| | | Sbjct 360 AATCTACAAAGTAGATGATACCGGTAATACATTTGCTGGTGTTCTAAACGGTCGTTTCAA 419 Query 106437 AGTCTACATTGACC 106450 ||| | |||||||| Sbjct 420 AGTATTCATTGACC 433 >seq292165 Length=556 Score = 86.0 bits (94), Expect = 9e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 151965 GATCAGGAGAAAGCCTGGGCGGAATACCTCTTTAAAGATGGTTCTATGATTGGTTTGAAC 152024 || || ||||||| |||||| ||||||| ||||||||||| || |||||||| || || Sbjct 512 GAGCAAGAGAAAGAATGGGCGCAATACCTGTTTAAAGATGGCTCAATGATTGGCTTAAAT 453 Query 152025 GAGAAACTACTAGGAAACTATGTTGAGTGGATTGCTAACCGTCGTATGAAGGCTGTTGGT 152084 || || | || | | || ||||| | |||||||||| |||||| | ||| ||||| Sbjct 452 GAACAAATTTTATGTCAATACGTTGAATACATTGCTAACCAACGTATGCAAGCTATTGGT 393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 725134856691760