Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq44246 333 4e-86
seq496362 199 5e-46
seq103378 109 7e-19
>seq44246
Length=4029
Score = 333 bits (368), Expect = 4e-86
Identities = 1020/1570 (65%), Gaps = 8/1570 (1%)
Strand=Plus/Minus
Query 68653 TTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTA 68712
||||| ||||| || ||||| ||||||||| | | | || ||||| || ||
Sbjct 1819 TTCTTCATCTCCTCGCCCCACAGCCCTCTCTCCGTCAGGTCCTTGAGCAGATGGGGGTTG 1760
Query 68713 ACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 68772
|| || || || || || || | || | || ||||| || || ||||| || | ||
Sbjct 1759 ACGATCTGGAACTCTCCTGACAGGACCCGGCGGGTGTAGATGTTGCTGGTGTAGGCCTCG 1700
Query 68773 ACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAAT 68832
| || || || || ||||| || || || || || || || ||||| || |||| ||
Sbjct 1699 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 1640
Query 68833 AAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGA 68892
| || || || | || || | ||| || || || || | ||||| ||||| ||
Sbjct 1639 AGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 1580
Query 68893 TCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCA 68952
|| | || | ||| | ||||| || || || || || || | || ||
Sbjct 1579 TCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGGGAGCC- 1521
Query 68953 TTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCG 69012
| || || || || || || || | || ||||| || || ||||| | || ||
Sbjct 1520 TCGTACGTGTCGTAGGGGCCCAGCTCGGCGGCCAGTTCGCAGCTGGCCTCCAGGGCGGCG 1461
Query 69013 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGA 69072
|| || || || || || |||| | || || || || || | || || || ||
Sbjct 1460 TAGTAGATGGTCTCAAAGATCTGGATGTTCAGCAGCTGGGCCTCGGGGCTTTCAAAGGGG 1401
Query 69073 TAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGT 69132
||| | | || || || || || |||| ||||| || || |||||||| || || ||
Sbjct 1400 TAACGCATCAGGATGAAGGCGTCGGCCAGGCCCTGGACGCCGATACCGATCGGCCTGTGG 1341
Query 69133 CTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTA 69192
| ||| || || || || || || | || || | ||||| ||||| || || ||
Sbjct 1340 CGCTTGTTGGACTGATCGGCCTCGGGCACCGGGTAGAAGTTAATCTCTATGATCTTGTTC 1281
Query 69193 AGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCA-TC 69251
|| || || | ||||| ||| || ||||| || ||||| |||| ||
Sbjct 1280 AGGTTCTTCACGATCACTTTGGTCACAGACTCCAGTTTCTTGAAGTCAAAA-GTCCGCTC 1222
Query 69252 TA---TAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGA 69308
| || |||| || || || | || || |||||||| || || |||||||
Sbjct 1221 GGGGGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTACACACAGCGACCTCATCGCC 1162
Query 69309 ATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTG 69368
| | | |||| | || || || || || || || || ||||| || ||||| || ||
Sbjct 1161 ACTGGAGTATTCAACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTTCCCAGGTTCTG 1102
Query 69369 CTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAAT 69428
||| || ||||| |||| |||||||| ||||| || || |||| || || | || |
Sbjct 1101 CTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTGCCCGACTCCGT 1042
Query 69429 CTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTT 69488
||| || ||||| || | | ||| || | ||| || | || |||| ||
Sbjct 1041 CTGGGACTCGATGATGGCGTGCCACACCTGCTGAGCCTTCACCACACGCTTGACCCGGCC 982
Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548
||| |||||||| || || ||| || || || || ||||| || |||| ||
Sbjct 981 CTCCCGCTCATATTGGGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCC 922
Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAA 69608
|| | || | |||||||||| ||||| | | | || || | ||||| ||
Sbjct 921 GGGGCTCTCGCTGGGACACATCAGAGACCAGTCCTGGTTGCTCTCCACCCTCTTCATGAA 862
Query 69609 TAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTG 69667
|| ||||| ||||| | ||| || ||||||||||||| ||| | || || || || |
Sbjct 861 CAGGTCGGGGATCCACA-AGCCGTAGAAGAGATCTCTGGCTCTCTGCTCCTCCTTCCCCG 803
Query 69668 TAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCG 69727
| || || || || || || || || | | ||| | ||||| || || || || || |
Sbjct 802 TGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCAAAGTGCCACGGCTCCAGGTACATGG 743
Query 69728 CCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGA 69787
| | | | || ||||| || || || ||||| || | || | || ||||| || ||||
Sbjct 742 CGAAGGCGCCGGGTCGCTTGTTGCCGCCCTGGTCGACATAGCGTGCTGTGTTGTTGTAGA 683
Query 69788 CTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTC 69847
| |||||||| || | | || || || || || || || || | || || || ||
Sbjct 682 CCCTCAGCATGGGGACCAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCGG 623
Query 69848 TTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCAC 69907
| | || || || | | | ||| |||||||||||| || ||||| || ||||
Sbjct 622 TGGATCGGATGCAGCTGACGGCCACACCGATTCCTCCTGCCGACTTGGAGATGAGTGCAC 563
Query 69908 AACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAAC 69967
| | |||| ||||| || || ||||| ||||| || || ||||| | || || || |
Sbjct 562 ACTGCTTCAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGC 503
Query 69968 AGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGA 70027
|||| || | ||| | | | ||||| || || || | || || || ||||| ||||
Sbjct 502 AGCTGGAGAGCTGAGGCCGGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGA 443
Query 70028 ACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAA 70087
|||| || || || ||||| ||||| || || || || | || |||||| || || |
Sbjct 442 ACCACTTCTCCGAGAGCAGGTTGTAGGTCTCGATGGCGGCGTCGATATCCGTCTTGTGGA 383
Query 70088 TTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTT 70147
|||| | || || | ||| | ||| ||||| || || || || ||| || || |
Sbjct 382 TTCCGACCGACACCCTCATGAGCATGTGCTGCGGCCGCTCCGCCACTTTGCCGTTGATCT 323
Query 70148 TCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTT 70207
||| |||||| ||| ||||| || || || || || ||||||| || || ||||| |
Sbjct 322 TCAGCAGGTAGGATCGCTCCAGCGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCTGT 263
Query 70208 CGTAAATAAT 70217
|| | || ||
Sbjct 262 CGAAGATGAT 253
>seq496362
Length=882
Score = 199 bits (220), Expect = 5e-46
Identities = 402/590 (68%), Gaps = 10/590 (2%)
Strand=Plus/Minus
Query 39620 GCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCA 39679
||||| ||||| || | || || || | | ||| |||||||| || ||||| | |||
Sbjct 630 GCGAAATCACAGTGAACACCTTCGTCACGAGAAATCAATTCGTTTGAGAATGTCAATCCT 571
Query 39680 GGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATG 39739
||||| | ||| || ||||| | ||| || |||| | ||||| || || ||||| ||
Sbjct 570 GGCATCAAACCTCGTTTTTTCAACCAGAAAATGGAACAAAAAGCACCTGAGAAGAAAATT 511
Query 39740 CCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATCCAC 39799
||||| ||||||||||| |||| | || |||| || || | ||| || |||||
Sbjct 510 CCTTCCACTGCTGCAAAAGCAATCAATCGCTCTGCGAAA---GAATCTGAATCAATCCAT 454
Query 39800 TTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 39859
| |||||| || |||||||| || | | ||| | ||||| || || || | |
Sbjct 453 TGAATTGCCCAGTCCGCTTTCTTTTTGATAGCAGGAAAAACTTCTAATGCGTTGAATAAA 394
Query 39860 TAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAA 39919
| ||| || | ||||| ||||| || || ||||||| |||| ||||
Sbjct 393 TCGGCTTTCTCTGCTTCGTCTTTTACATAAGTGTCGATTAACAAGGAATACGTTTCGCTG 334
Query 39920 TGGATGTTTTCAATCGCCATCTGAAATCCGTA-AAAACATCTTGCTTCAGTAATTTGTAC 39978
|| || ||||| ||| || || || || || ||| || | ||||||| | ||| ||
Sbjct 333 TGAATATTTTCCATCATGATTTGGAAACCATAGAAAGAATTTCGCTTCAGCATATTGCAC 274
Query 39979 CTC-TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAA 40037
|| | ||||| | |||| || | ||||||||| || ||||| || |||||| ||||
Sbjct 273 TTCATTTACAAAGT-TTTCAGCAAGATTTTCATTTACAATTCCGTCTGAAGCGGCGAAAA 215
Query 40038 ATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAA---TTTATTCCAGTCAT 40094
|||| || | ||||| ||||| |||| ||| || |||| ||||||||||| |
Sbjct 214 ATGCTAAAATGTGTTTGATAAAGTATTGTTCGTCTTTATTCAACTTGTTATTCCAGTCGT 155
Query 40095 TGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGT 40154
| | ||||| ||| | ||| | |||||| || ||||| || || ||| ||| |
Sbjct 154 TTAAATCTTGTGACAAATCAATTTCTTCGGCAGTCCAGAAACTCG-CTCCATGGATTTAT 96
Query 40155 ACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTT 40204
| | | ||| ||||| | | | || |||||||| ||||| | ||||
Sbjct 95 AAAATTCCCAAATATCTTGGTGCTTGATCGGAAAAATGACAAAACGATTT 46
>seq103378
Length=1867
Score = 109 bits (120), Expect = 7e-19
Identities = 96/120 (80%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 69324 TATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTT 69383
||||||||| || ||||| || ||||||| || |||||||| ||||| || |||||
Sbjct 1774 TATCTCTGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGTTGCTCTTCCC 1715
Query 69384 GTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443
||| |||||||||||||| || || |||| ||||| |||||| |||| || ||||| ||
Sbjct 1714 GTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTTTCAGTCTGTGACTCGATGAT 1655
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 682396650647280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |