Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq44246 333 4e-86 seq496362 199 5e-46 seq103378 109 7e-19 >seq44246 Length=4029 Score = 333 bits (368), Expect = 4e-86 Identities = 1020/1570 (65%), Gaps = 8/1570 (1%) Strand=Plus/Minus Query 68653 TTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTA 68712 ||||| ||||| || ||||| ||||||||| | | | || ||||| || || Sbjct 1819 TTCTTCATCTCCTCGCCCCACAGCCCTCTCTCCGTCAGGTCCTTGAGCAGATGGGGGTTG 1760 Query 68713 ACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 68772 || || || || || || || | || | || ||||| || || ||||| || | || Sbjct 1759 ACGATCTGGAACTCTCCTGACAGGACCCGGCGGGTGTAGATGTTGCTGGTGTAGGCCTCG 1700 Query 68773 ACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAAT 68832 | || || || || ||||| || || || || || || || ||||| || |||| || Sbjct 1699 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 1640 Query 68833 AAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGA 68892 | || || || | || || | ||| || || || || | ||||| ||||| || Sbjct 1639 AGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 1580 Query 68893 TCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCA 68952 || | || | ||| | ||||| || || || || || || | || || Sbjct 1579 TCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGGGAGCC- 1521 Query 68953 TTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCG 69012 | || || || || || || || | || ||||| || || ||||| | || || Sbjct 1520 TCGTACGTGTCGTAGGGGCCCAGCTCGGCGGCCAGTTCGCAGCTGGCCTCCAGGGCGGCG 1461 Query 69013 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGA 69072 || || || || || || |||| | || || || || || | || || || || Sbjct 1460 TAGTAGATGGTCTCAAAGATCTGGATGTTCAGCAGCTGGGCCTCGGGGCTTTCAAAGGGG 1401 Query 69073 TAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGT 69132 ||| | | || || || || || |||| ||||| || || |||||||| || || || Sbjct 1400 TAACGCATCAGGATGAAGGCGTCGGCCAGGCCCTGGACGCCGATACCGATCGGCCTGTGG 1341 Query 69133 CTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTA 69192 | ||| || || || || || || | || || | ||||| ||||| || || || Sbjct 1340 CGCTTGTTGGACTGATCGGCCTCGGGCACCGGGTAGAAGTTAATCTCTATGATCTTGTTC 1281 Query 69193 AGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCA-TC 69251 || || || | ||||| ||| || ||||| || ||||| |||| || Sbjct 1280 AGGTTCTTCACGATCACTTTGGTCACAGACTCCAGTTTCTTGAAGTCAAAA-GTCCGCTC 1222 Query 69252 TA---TAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGA 69308 | || |||| || || || | || || |||||||| || || ||||||| Sbjct 1221 GGGGGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTACACACAGCGACCTCATCGCC 1162 Query 69309 ATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTG 69368 | | | |||| | || || || || || || || || ||||| || ||||| || || Sbjct 1161 ACTGGAGTATTCAACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTTCCCAGGTTCTG 1102 Query 69369 CTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAAT 69428 ||| || ||||| |||| |||||||| ||||| || || |||| || || | || | Sbjct 1101 CTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTGCCCGACTCCGT 1042 Query 69429 CTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTT 69488 ||| || ||||| || | | ||| || | ||| || | || |||| || Sbjct 1041 CTGGGACTCGATGATGGCGTGCCACACCTGCTGAGCCTTCACCACACGCTTGACCCGGCC 982 Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548 ||| |||||||| || || ||| || || || || ||||| || |||| || Sbjct 981 CTCCCGCTCATATTGGGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCC 922 Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAA 69608 || | || | |||||||||| ||||| | | | || || | ||||| || Sbjct 921 GGGGCTCTCGCTGGGACACATCAGAGACCAGTCCTGGTTGCTCTCCACCCTCTTCATGAA 862 Query 69609 TAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTG 69667 || ||||| ||||| | ||| || ||||||||||||| ||| | || || || || | Sbjct 861 CAGGTCGGGGATCCACA-AGCCGTAGAAGAGATCTCTGGCTCTCTGCTCCTCCTTCCCCG 803 Query 69668 TAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCG 69727 | || || || || || || || || | | ||| | ||||| || || || || || | Sbjct 802 TGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCAAAGTGCCACGGCTCCAGGTACATGG 743 Query 69728 CCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGA 69787 | | | | || ||||| || || || ||||| || | || | || ||||| || |||| Sbjct 742 CGAAGGCGCCGGGTCGCTTGTTGCCGCCCTGGTCGACATAGCGTGCTGTGTTGTTGTAGA 683 Query 69788 CTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTC 69847 | |||||||| || | | || || || || || || || || | || || || || Sbjct 682 CCCTCAGCATGGGGACCAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCGG 623 Query 69848 TTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCAC 69907 | | || || || | | | ||| |||||||||||| || ||||| || |||| Sbjct 622 TGGATCGGATGCAGCTGACGGCCACACCGATTCCTCCTGCCGACTTGGAGATGAGTGCAC 563 Query 69908 AACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAAC 69967 | | |||| ||||| || || ||||| ||||| || || ||||| | || || || | Sbjct 562 ACTGCTTCAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGC 503 Query 69968 AGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGA 70027 |||| || | ||| | | | ||||| || || || | || || || ||||| |||| Sbjct 502 AGCTGGAGAGCTGAGGCCGGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGA 443 Query 70028 ACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAA 70087 |||| || || || ||||| ||||| || || || || | || |||||| || || | Sbjct 442 ACCACTTCTCCGAGAGCAGGTTGTAGGTCTCGATGGCGGCGTCGATATCCGTCTTGTGGA 383 Query 70088 TTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTT 70147 |||| | || || | ||| | ||| ||||| || || || || ||| || || | Sbjct 382 TTCCGACCGACACCCTCATGAGCATGTGCTGCGGCCGCTCCGCCACTTTGCCGTTGATCT 323 Query 70148 TCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTT 70207 ||| |||||| ||| ||||| || || || || || ||||||| || || ||||| | Sbjct 322 TCAGCAGGTAGGATCGCTCCAGCGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCTGT 263 Query 70208 CGTAAATAAT 70217 || | || || Sbjct 262 CGAAGATGAT 253 >seq496362 Length=882 Score = 199 bits (220), Expect = 5e-46 Identities = 402/590 (68%), Gaps = 10/590 (2%) Strand=Plus/Minus Query 39620 GCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCA 39679 ||||| ||||| || | || || || | | ||| |||||||| || ||||| | ||| Sbjct 630 GCGAAATCACAGTGAACACCTTCGTCACGAGAAATCAATTCGTTTGAGAATGTCAATCCT 571 Query 39680 GGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATG 39739 ||||| | ||| || ||||| | ||| || |||| | ||||| || || ||||| || Sbjct 570 GGCATCAAACCTCGTTTTTTCAACCAGAAAATGGAACAAAAAGCACCTGAGAAGAAAATT 511 Query 39740 CCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATCCAC 39799 ||||| ||||||||||| |||| | || |||| || || | ||| || ||||| Sbjct 510 CCTTCCACTGCTGCAAAAGCAATCAATCGCTCTGCGAAA---GAATCTGAATCAATCCAT 454 Query 39800 TTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 39859 | |||||| || |||||||| || | | ||| | ||||| || || || | | Sbjct 453 TGAATTGCCCAGTCCGCTTTCTTTTTGATAGCAGGAAAAACTTCTAATGCGTTGAATAAA 394 Query 39860 TAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAA 39919 | ||| || | ||||| ||||| || || ||||||| |||| |||| Sbjct 393 TCGGCTTTCTCTGCTTCGTCTTTTACATAAGTGTCGATTAACAAGGAATACGTTTCGCTG 334 Query 39920 TGGATGTTTTCAATCGCCATCTGAAATCCGTA-AAAACATCTTGCTTCAGTAATTTGTAC 39978 || || ||||| ||| || || || || || ||| || | ||||||| | ||| || Sbjct 333 TGAATATTTTCCATCATGATTTGGAAACCATAGAAAGAATTTCGCTTCAGCATATTGCAC 274 Query 39979 CTC-TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAA 40037 || | ||||| | |||| || | ||||||||| || ||||| || |||||| |||| Sbjct 273 TTCATTTACAAAGT-TTTCAGCAAGATTTTCATTTACAATTCCGTCTGAAGCGGCGAAAA 215 Query 40038 ATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAA---TTTATTCCAGTCAT 40094 |||| || | ||||| ||||| |||| ||| || |||| ||||||||||| | Sbjct 214 ATGCTAAAATGTGTTTGATAAAGTATTGTTCGTCTTTATTCAACTTGTTATTCCAGTCGT 155 Query 40095 TGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGT 40154 | | ||||| ||| | ||| | |||||| || ||||| || || ||| ||| | Sbjct 154 TTAAATCTTGTGACAAATCAATTTCTTCGGCAGTCCAGAAACTCG-CTCCATGGATTTAT 96 Query 40155 ACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTT 40204 | | | ||| ||||| | | | || |||||||| ||||| | |||| Sbjct 95 AAAATTCCCAAATATCTTGGTGCTTGATCGGAAAAATGACAAAACGATTT 46 >seq103378 Length=1867 Score = 109 bits (120), Expect = 7e-19 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 69324 TATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTT 69383 ||||||||| || ||||| || ||||||| || |||||||| ||||| || ||||| Sbjct 1774 TATCTCTGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGTTGCTCTTCCC 1715 Query 69384 GTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 ||| |||||||||||||| || || |||| ||||| |||||| |||| || ||||| || Sbjct 1714 GTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTTTCAGTCTGTGACTCGATGAT 1655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 682396650647280