Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_027330.1 Length=45403 Score E Sequences producing significant alignments: (Bits) Value seq494738 244 3e-60 seq441498 91.5 4e-14 >seq494738 Length=508 Score = 244 bits (270), Expect = 3e-60 Identities = 272/362 (75%), Gaps = 1/362 (0%) Strand=Plus/Plus Query 36773 TCCTTGAGGTATTGCAGCCAGATACCTATGCTGGCGACCGTTCATCCATTGAAGCTTTTG 36832 |||||||| || | || ||||| ||||| || || | | || || ||| |||||| Sbjct 9 TCCTTGAGTGCTTACGGC-AGATAAGTATGCAGGAGATAGAGCCTCAATAGAATCTTTTG 67 Query 36833 ATATTCATTGGTGCTTCCGTGGTGCTGATAAGTCACCATCTGTCACCTGCTATTCTATCG 36892 || |||||||| |||||||| ||||| ||||| ||||| || | || || ||||||| Sbjct 68 ATGTTCATTGGGTGTTCCGTGGAGCTGACAAGTCTCCATCCGTTCCTTGTTACTCTATCG 127 Query 36893 AGTCAGGTGCGCAGGGTGCTCGTGCTGACCTTATCCTTGCTGATGATATTGAGTCGCTAC 36952 ||||||| || ||||| ||||||||||| | || |||| |||||||||||||| ||| Sbjct 128 AGTCAGGAGCACAGGGCGCTCGTGCTGATATAATAATTGCAGATGATATTGAGTCCTTAC 187 Query 36953 AAAACTCCCGTACAGCTCAGAGCCGTGAGTGGCTGCTTGAGCAGTCATTAGAGTTTGAGT 37012 | ||||| ||| ||| | ||||||| ||| || | |||||| | |||||||| |||| Sbjct 188 AGAACTCTCGTTCAGTTGCTGGCCGTGAATGGTTGATGGAGCAGACCTTAGAGTTCGAGT 247 Query 37013 CGATTAACCAGTATGGTCGTATCATCTATCTAGGTACACCTCAGGGTGTTGAGTCTATCT 37072 | || ||||| | ||||| ||| || || |||| ||||| ||| | || |||||||||| Sbjct 248 CTATCAACCAATTTGGTCATATTATATACTTAGGCACACCACAGAGCGTGGAGTCTATCT 307 Query 37073 ACAACACGCTTCCAGCTCGTGGCTACGTTATGCGTATCTGGCCTGGCCGTTATCCAACAG 37132 ||||| ||| || |||||||||| | ||||||||| | || | || || || | Sbjct 308 ACAACTGGCTGCCTAGTCGTGGCTACAAGGTTCGTATCTGGACAGGTAGATACCCTACTG 367 Query 37133 CT 37134 || Sbjct 368 CT 369 >seq441498 Length=539 Score = 91.5 bits (100), Expect = 4e-14 Identities = 164/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 37105 CGTATCTGGCCTGGCCGTTATCCAACAGCTGAGCAGCTTGAGTTCTATGGCAATGCTCTG 37164 ||||||||| | || ||||| || ||| ||| ||||| || | ||| || || || Sbjct 36 CGTATCTGGACAGGGCGTTACCCTACAAATGAACAGCTAGAATACTACGGTGATAAACTA 95 Query 37165 GCTCC-ATTATTCCGTAAGGATATTGAAGCTGACCCAAGCTTGCAAAGCGGTGGTGGGCT 37223 ||||| ||||||| || | ||| | || |||||| || || | |||||||| || Sbjct 96 GCTCCTATTATTC-GTCATGATTTAGATAACAACCCAATGTTACAGATAGGTGGTGGTCT 154 Query 37224 TGATGGTACTATGGGCAAGCCAACAACACCTGCTATGTATGATGAGGAGTTGTTGCAAGA 37283 |||||| ||||||| |||| || |||| |||||| | || | ||| | || Sbjct 155 TGATGGCTCTATGGGACAGCCTACCTGCCCTGAAATGTATACCAATGATATCTTGAATGA 214 Query 37284 GAAGGAGATGAGGCAAGGTCTTGCTAAGTTCATGTTGCAGTTCATGGTTCACACAGG 37340 |||||| || || ||| |||||||||||| | ||||| ||| || | || || Sbjct 215 GAAGGAATTGGCACAGGGTAAAGCTAAGTTCATGCTACAGTTTATGCTTAATACTGG 271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144262102867260