Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_027331.1
Length=170341
Score E
Sequences producing significant alignments: (Bits) Value
seq449735 178 1e-39
seq509673 109 6e-19
seq128994 102 9e-17
>seq449735
Length=3187
Score = 178 bits (196), Expect = 1e-39
Identities = 278/393 (71%), Gaps = 16/393 (4%)
Strand=Plus/Minus
Query 143151 TGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTCTTAAGTACGAGGAGATTCTCGACT 143210
||||| | ||||| ||||| || || ||| || |||||||| | || || || |||
Sbjct 410 TGACGCACGCGGTTGTCATCAACCCCGCGGTTATTTTTAAGTACTAACAGGTTTTCTACT 351
Query 143211 TCAAGATGCCAAATTGGATAGTACAATGTTGCGGCACCACCACGAACTCCGCCTTGGGAA 143270
|| | |||||||| || ||| |||| ||||| || || ||||| || |||||||| |||
Sbjct 350 TCTAAATGCCAAAGCGGGTAGAACAAGGTTGCTGCGCCGCCACGTACACCGCCTTGCGAA 291
Query 143271 CAGGATTTAACTGCAGTTTGGAAGTGTTTCCAGAAAGGAATAACTCCAGTATGCTTGACT 143330
||| |||||| || ||||| ||||| || | ||||||||| || ||||| | ||
Sbjct 290 CAGCTTTTAACCGCTGTTTGAAAGTGCTTATAAAAAGGAATACAACCCGTATGGTACGCT 231
Query 143331 TCACCGTTTCCGATTTTTGAACCTTCTGCACGCAACATCCCCGCGTTAATGCCAATACCT 143390
|| || || | || | ||| |||||| | || |||||||||||||| ||
Sbjct 230 TCGCCATTGCGAATGTGGCTACCCAGTGCACGAATGCGACCTGCGTTAATGCCAATGCCG 171
Query 143391 GCACGCTTACTGATA--TACTCAATAATGCTTGCAC------TGGCTTTGTTAATTGACT 143442
||||| || | |||| || | || ||| |||| |||| ||||||||| |
Sbjct 170 GCACG-TTGC-GATACGTATTTAACAAT---TGCAGACGAGGTGGC---GTTAATTGAAT 119
Query 143443 TAAGTGAGTCACCAGCTTCAATAACAACACAAGAGCTAAACTGACGAGTCGGTGTACGAG 143502
||| ||| ||| || || | ||||| ||||||||||| || || || ||||||
Sbjct 118 CAAGGCTGTCGCCACACTCTATTAATACACACGAGCTAAACTGGCGTGTTGGCGTACGAA 59
Query 143503 CCCCGGCCATAATTGGAGTAGGCAAAGAAATTT 143535
| || ||||||||||| ||||| | |||||||
Sbjct 58 CACCTGCCATAATTGGCGTAGGTAGTGAAATTT 26
>seq509673
Length=441
Score = 109 bits (120), Expect = 6e-19
Identities = 143/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 143139 CCATAGTCCAGGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTCTTAAGTACGAGG 143198
|| || |||| ||||| | ||||| || || ||||| ||| || || ||||| |
Sbjct 234 CCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTATTTTTCAGTACCAAT 293
Query 143199 AGATTCTCGACTTCAAGATGCCAAATTGGATAGTACAATGTTGCGGCACCACCACGAACT 143258
| ||| ||||| | |||||| | ||| || |||| || || ||||| ||||| ||
Sbjct 294 AATGACTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCGCTGCACCGCCACGGACG 353
Query 143259 CCGCCTTGGGAACAGGATTTAACTGCAGTTTGGAAGTGTTTCCAGAAAGGAATAACTCCA 143318
|||||||| || ||| ||||||| ||||||||||| |||| |||| || ||| ||
Sbjct 354 CCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTTATAGAATGGGATACAACCC 413
Query 143319 GTATGCTTGACTTCACCG 143336
||||||| |||| |||
Sbjct 414 GTATGCTGCGCTTCGCCG 431
>seq128994
Length=861
Score = 102 bits (112), Expect = 9e-17
Identities = 177/252 (70%), Gaps = 4/252 (2%)
Strand=Plus/Plus
Query 141315 CGGCACGTTTCATGATTGCTTCATCAAGAACAATTTCATCAAAGATCTTAGCAGGATCAT 141374
||||||| || | ||| | |||| | ||||| || ||||| | | || || | ||
Sbjct 601 CGGCACGCTTTAAAATTTCATCATTTTGTACAATATCGTCAAATACCAAAGATGGGTTAT 660
Query 141375 TGAACAAG-TTACGCATGATGTGGGTGTAAGAACGAGAGTGAATCGTTTCAGAGAACGTC 141433
| ||||| ||||| || ||||| ||||| ||||| |||||||| |||||||| |||| |
Sbjct 661 T-AACAATATTACGAATAATGTGAGTGTACGAACGCGAGTGAATGGTTTCAGAAAACGAC 719
Query 141434 CAAGTCTGGTTCCAAGTATCCAAAGAAGG-ATCGCTAATCAGAGCAGACAAGACAGCAGC 141492
|| || | |||| || ||||| ||| | || || | ||| | | | || ||
Sbjct 720 CATGTTTCAATCCACGTTTCCAATTCAGGTAGCGATACCAAAGGCAAAAATGCCA-CATT 778
Query 141493 AGGTGCTCGACCTTGAATTGAATCCAATAAGCTCTGATACTTCAAGTTGTTGATAAAAAT 141552
|||| || ||||||||||| || || ||| | || |||||||| || || |||||
Sbjct 779 CGGTGAGCGGCCTTGAATTGAGTCTAACAAGGTTTGGTACTTCAAATTTGAGAAGAAAAT 838
Query 141553 ATTTTGCTGATG 141564
|| ||| | |||
Sbjct 839 ATGTTGTTCATG 850
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 541383459355920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |