Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_027331.1 Length=170341 Score E Sequences producing significant alignments: (Bits) Value seq449735 178 1e-39 seq509673 109 6e-19 seq128994 102 9e-17 >seq449735 Length=3187 Score = 178 bits (196), Expect = 1e-39 Identities = 278/393 (71%), Gaps = 16/393 (4%) Strand=Plus/Minus Query 143151 TGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTCTTAAGTACGAGGAGATTCTCGACT 143210 ||||| | ||||| ||||| || || ||| || |||||||| | || || || ||| Sbjct 410 TGACGCACGCGGTTGTCATCAACCCCGCGGTTATTTTTAAGTACTAACAGGTTTTCTACT 351 Query 143211 TCAAGATGCCAAATTGGATAGTACAATGTTGCGGCACCACCACGAACTCCGCCTTGGGAA 143270 || | |||||||| || ||| |||| ||||| || || ||||| || |||||||| ||| Sbjct 350 TCTAAATGCCAAAGCGGGTAGAACAAGGTTGCTGCGCCGCCACGTACACCGCCTTGCGAA 291 Query 143271 CAGGATTTAACTGCAGTTTGGAAGTGTTTCCAGAAAGGAATAACTCCAGTATGCTTGACT 143330 ||| |||||| || ||||| ||||| || | ||||||||| || ||||| | || Sbjct 290 CAGCTTTTAACCGCTGTTTGAAAGTGCTTATAAAAAGGAATACAACCCGTATGGTACGCT 231 Query 143331 TCACCGTTTCCGATTTTTGAACCTTCTGCACGCAACATCCCCGCGTTAATGCCAATACCT 143390 || || || | || | ||| |||||| | || |||||||||||||| || Sbjct 230 TCGCCATTGCGAATGTGGCTACCCAGTGCACGAATGCGACCTGCGTTAATGCCAATGCCG 171 Query 143391 GCACGCTTACTGATA--TACTCAATAATGCTTGCAC------TGGCTTTGTTAATTGACT 143442 ||||| || | |||| || | || ||| |||| |||| ||||||||| | Sbjct 170 GCACG-TTGC-GATACGTATTTAACAAT---TGCAGACGAGGTGGC---GTTAATTGAAT 119 Query 143443 TAAGTGAGTCACCAGCTTCAATAACAACACAAGAGCTAAACTGACGAGTCGGTGTACGAG 143502 ||| ||| ||| || || | ||||| ||||||||||| || || || |||||| Sbjct 118 CAAGGCTGTCGCCACACTCTATTAATACACACGAGCTAAACTGGCGTGTTGGCGTACGAA 59 Query 143503 CCCCGGCCATAATTGGAGTAGGCAAAGAAATTT 143535 | || ||||||||||| ||||| | ||||||| Sbjct 58 CACCTGCCATAATTGGCGTAGGTAGTGAAATTT 26 >seq509673 Length=441 Score = 109 bits (120), Expect = 6e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 143139 CCATAGTCCAGGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTCTTAAGTACGAGG 143198 || || |||| ||||| | ||||| || || ||||| ||| || || ||||| | Sbjct 234 CCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTATTTTTCAGTACCAAT 293 Query 143199 AGATTCTCGACTTCAAGATGCCAAATTGGATAGTACAATGTTGCGGCACCACCACGAACT 143258 | ||| ||||| | |||||| | ||| || |||| || || ||||| ||||| || Sbjct 294 AATGACTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCGCTGCACCGCCACGGACG 353 Query 143259 CCGCCTTGGGAACAGGATTTAACTGCAGTTTGGAAGTGTTTCCAGAAAGGAATAACTCCA 143318 |||||||| || ||| ||||||| ||||||||||| |||| |||| || ||| || Sbjct 354 CCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTTATAGAATGGGATACAACCC 413 Query 143319 GTATGCTTGACTTCACCG 143336 ||||||| |||| ||| Sbjct 414 GTATGCTGCGCTTCGCCG 431 >seq128994 Length=861 Score = 102 bits (112), Expect = 9e-17 Identities = 177/252 (70%), Gaps = 4/252 (2%) Strand=Plus/Plus Query 141315 CGGCACGTTTCATGATTGCTTCATCAAGAACAATTTCATCAAAGATCTTAGCAGGATCAT 141374 ||||||| || | ||| | |||| | ||||| || ||||| | | || || | || Sbjct 601 CGGCACGCTTTAAAATTTCATCATTTTGTACAATATCGTCAAATACCAAAGATGGGTTAT 660 Query 141375 TGAACAAG-TTACGCATGATGTGGGTGTAAGAACGAGAGTGAATCGTTTCAGAGAACGTC 141433 | ||||| ||||| || ||||| ||||| ||||| |||||||| |||||||| |||| | Sbjct 661 T-AACAATATTACGAATAATGTGAGTGTACGAACGCGAGTGAATGGTTTCAGAAAACGAC 719 Query 141434 CAAGTCTGGTTCCAAGTATCCAAAGAAGG-ATCGCTAATCAGAGCAGACAAGACAGCAGC 141492 || || | |||| || ||||| ||| | || || | ||| | | | || || Sbjct 720 CATGTTTCAATCCACGTTTCCAATTCAGGTAGCGATACCAAAGGCAAAAATGCCA-CATT 778 Query 141493 AGGTGCTCGACCTTGAATTGAATCCAATAAGCTCTGATACTTCAAGTTGTTGATAAAAAT 141552 |||| || ||||||||||| || || ||| | || |||||||| || || ||||| Sbjct 779 CGGTGAGCGGCCTTGAATTGAGTCTAACAAGGTTTGGTACTTCAAATTTGAGAAGAAAAT 838 Query 141553 ATTTTGCTGATG 141564 || ||| | ||| Sbjct 839 ATGTTGTTCATG 850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541383459355920