Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_027345.1 Length=73008 Score E Sequences producing significant alignments: (Bits) Value seq486019 336 1e-87 seq488807 190 9e-44 seq255804 163 1e-35 seq523594 96.9 2e-15 >seq486019 Length=823 Score = 336 bits (372), Expect = 1e-87 Identities = 573/824 (70%), Gaps = 5/824 (1%) Strand=Plus/Plus Query 68081 CATCCACCCACAGCCAGTCTTCGTTGTGGGAGTAAGCCCAGACACTGATCACACTGAAGT 68140 |||| ||||| | ||| || | |||| ||||||||| ||| | |||||||| | Sbjct 1 CATCAACCCAGAACCAATCACCATTGTTATTGTAAGCCCACACAGATAAAACACTGAAAT 60 Query 68141 CACTCGCCTTCTTCGCAGAGGTAGCGAAGTCAGTGGTGATGTAGAAGTTGTACCGCTTCT 68200 | | |||| || || || |||||||| || || ||||||||| || | Sbjct 61 CCGCAGAGGTCTTTTCACTAGTTGCAAAGTCAGTTGTTATATAGAAGTTGAACTTACCTT 120 Query 68201 TGTTGTCCAGTACGTTGCGCC-GCATGTACCAAGCCACCTCACCATCCTGGATGAGACGG 68259 | || | | ||| || | | ||||||| | |||| ||| || || ||||| Sbjct 121 TATTTTTTAATACAA-GCTCATGTCTGTACCAGTTAATATCACAATCTTGAATTAGACGA 179 Query 68260 TCTTCGTCGGACATGATCTGGAGCATAAGCTCCTGGTTGAATGTCTCGATCTTCCCTGCC 68319 || ||||| |||||||| | | ||||||||| ||||| ||||| || | ||| |||||| Sbjct 180 TCCTCGTCTGACATGATTCGTAACATAAGCTCTTGGTTAAATGTATCCACCTTACCTGCC 239 Query 68320 TTCTTGGCCAGGGTGTACTTCTGCAACACGAAGTCGTAGGTGAATCGGTCAGCCCAAGCA 68379 || || ||||| || | || || || | || | ||| || |||| ||| ||| Sbjct 240 TTAAAAGCTTTAGTGTATTTGTCTAAAACAAATTGATATGAGAAACGATCAGGCCACGCA 299 Query 68380 CCCCTGAACTCTTCCCGTGAGCACGGGAATCTCTCGCACACAGGGTAGACGTTGACCTTC 68439 || || || |||| | | || || || | | ||||||||||| ||||| || | Sbjct 300 CCTCTAAAGTCTTTCTCTTCACAAGGAAAATTAGCACACACAGGGTACACGTTAACTGCC 359 Query 68440 CAGGCACCAGACTCCACTGCTTTGTACAGTGGATCCTTCGCGTTGAACGGTGTACCCGAC 68499 || ||||||||||| ||||||||||| | |||||| || ||| || || ||||| ||| Sbjct 360 CAAGCACCAGACTCAACTGCTTTGTATAATGGATCACGCGAGTTAAAGGGAGTACCTGAC 419 Query 68500 CAGATGATCAT-GTTCTTCTTCGGGTGCAGTGCGTAGTCCACTGCCTTGTACACCGTGTC 68558 ||||| | | | | | | || |||| | ||||||||| | ||||||||||| || || Sbjct 420 CAGATTACCTTAGAGCGTATT-GGGTCTAATGCGTAGTCAATAGCCTTGTACACTGTATC 478 Query 68559 TTCGATGGCTGCGATGACGGTTGGCGAGCGAGCATCTTCGTCCGAAACCAAGTCATCCAG 68618 ||| | || | || || || | || | |||||||| ||||| | |||||||| || Sbjct 479 TTCTACAGCAGAAATAACTGTAGCTGACCTCGCATCTTCATCCGATATTAAGTCATCTAG 538 Query 68619 TACCGCAAGCTGCGGTCGCTTACCCATCTCCTTCGCACCACGGACACCAGTCTTGGCACC 68678 ||| |||||| || || ||||||||| || |||||||| ||||| ||||| || || Sbjct 539 TACAGCAAGCACTGGACGAACACCCATCTCTTTAGCACCACGTACACCGGTCTTTGCGCC 598 Query 68679 GTAGCCCTTGACGATGAAGACCTTCCCGTCCAGGTTCGTGAACTTCCAGCGGATGTCAGT 68738 || || || ||||| || || || || | ||| | || | |||||| || ||||| Sbjct 599 ATAACCTTTTACGATAAATCGGTTACCATCAATGTTATTAAATTCCCAGCGTATATCAGT 658 Query 68739 GAAGTTGGTTTGGGGGATGTACTTCTTCAGGAACTCGGAGTTCTCCCAGCGGAACTCCAG 68798 ||| | || | || | ||||| | || || ||||| ||||| |||||||||| Sbjct 659 GAACCTAGTGT-AGGTACATACTTAAGTAAAAATTCTGAGTTTTCCCAACGGAACTCCAA 717 Query 68799 GTTCTTACGCATGTTCTTCACACCGTTGTCGATGGAGTCCGACACGTACAGAGCAAGGTC 68858 |||||||||||||||||| |||||||| || || || || || |||||||| | | Sbjct 718 GTTCTTACGCATGTTCTTAACACCGTTCTCTATACTATCTGAAACATACAGAGCCAAGGG 777 Query 68859 TACCTTACCGAAACCAGGAAGCTCACCGTACAGTGCAATGTACA 68902 || ||||| || || || | |||||||| || ||||||| Sbjct 778 AACTTTACCAAACCCGGGGATGTCACCGTAACAAGCTATGTACA 821 >seq488807 Length=774 Score = 190 bits (210), Expect = 9e-44 Identities = 311/444 (70%), Gaps = 8/444 (2%) Strand=Plus/Minus Query 68116 GCCCAGACACTGATCACACTGAAGTCACTCGCCTTCTTCGCAGAGGTAGCGAAGTCAGTG 68175 ||||| ||| || || || ||||| || |||| || ||||||| || || || || Sbjct 440 GCCCATACAGATATTACGCTAAAGTCGCTAGCCTCTTTTTCAGAGGTTGCAAAATCCGTA 381 Query 68176 GTGATGTAGAAGTTGTACCGCTTCTTG----TTGTCCAGTACGTTGCGCCGCATGTACCA 68231 |||||||||||||||||| || |||| || ||| | || || || |||||| Sbjct 380 GTGATGTAGAAGTTGTAC-GCGTCTTTACTCTTAAGAAGTGCATTACGT-GC--GTACCA 325 Query 68232 AGCCACCTCACCATCCTGGATGAGACGGTCTTCGTCGGACATGATCTGGAGCATAAGCTC 68291 | | ||||| ||| | || | | |||||| || ||||| || ||||| | ||| Sbjct 324 ATTAATCTCACTATCTTTAATTAATCTGTCTTCTTCTGACATAATTCTTAGCATCAACTC 265 Query 68292 CTGGTTGAATGTCTCGATCTTCCCTGCCTTCTTGGCCAGGGTGTACTTCTGCAACACGAA 68351 ||||| || | || | ||| ||||| || || |||||| | || || || | Sbjct 264 TTGGTTAAAAGAATCCACCTTACCTGCTTTAACAGCTTTGGTGTATTGCTTCATTACATA 205 Query 68352 GTCGTAGGTGAATCGGTCAGCCCAAGCACCCCTGAACTCTTCCCGTGAGCACGGGAATCT 68411 ||| || ||||| || |||| ||| | || |||||||||| | | || || ||| | Sbjct 204 GTCATACGTGAAGCGATCAGGCCATGAGCCTTTGAACTCTTCTCTCGTACAAGGAAATTT 145 Query 68412 CTCGCACACAGGGTAGACGTTGACCTTCCAGGCACCAGACTCCACTGCTTTGTACAGTGG 68471 ||| ||||||||||| || || || | ||| || || ||||| ||||||||||||| ||| Sbjct 144 CTCACACACAGGGTACACATTTACGTACCAAGCTCCTGACTCAACTGCTTTGTACAATGG 85 Query 68472 ATCCTTCGCGTTGAACGGTGTACCCGACCAGATGATCATGTTCTTCTTCGGGTGCAGTGC 68531 || ||||| ||||| ||||| |||||||| || | ||| | || |||| ||| Sbjct 84 GTCACGGGCGTTAAACGGAGTACCTGACCAGATTATTTTAGACTTGGTAGGATGCAATGC 25 Query 68532 GTAGTCCACTGCCTTGTACACCGT 68555 ||| |||||||| || || || || Sbjct 24 GTAATCCACTGCTTTATAAACTGT 1 >seq255804 Length=3791 Score = 163 bits (180), Expect = 1e-35 Identities = 471/719 (66%), Gaps = 13/719 (2%) Strand=Plus/Plus Query 68372 CCCAAGCACCCCTGAACTCTTCCCGTGAGCACGGGAATCTCTCGCACACAGGGTAGACGT 68431 |||| || || | |||||||| | | || || || |||| || | ||| || || Sbjct 2268 CCCATGCTCCTTTAAACTCTTCTCTAGTACAAGGAAACTTCTCACATATAGGATATACAC 2327 Query 68432 TGACCTTCCAGGCACCAGACTCCACTGCTTTGTACAGTGGATCCTTCGCGTTGAACGGTG 68491 | || | ||| |||||||| |||| |||| |||| ||||| || || || || || | Sbjct 2328 TTACATCCCATGCACCAGATTCCATAGCTTCATACAAAGGATCATTAGCATTAAAGGGAG 2387 Query 68492 TACCCGACCAGATGATCATGTTCTTCTTCGGGTGCAGTGCGTAGTCCACTGCCTTGTACA 68551 |||| ||| || || | |||||| ||||| ||||| || | | |||| | Sbjct 2388 TACCAAGCCATATAGTCTTAGACTTCTTAGGGTGAAGTGCATACTTAATAGCCTGACCTA 2447 Query 68552 CCGTGTCTTCGATGGCTGCGATGACGGTTGGCGAGCGAGCATCTTCGTCCGAAACCAAGT 68611 | ||||||| || ||| || || || || || || | || || | ||| |||| Sbjct 2448 CTGTGTCTTTAATAGCTTGAATAACTGTAGGTGAACGTGAGTCATCATTACTAACTAAGT 2507 Query 68612 CATCCAGTACCGCAAGCTGCGGTCGCTTACCCATCTCCTTCGCACCACGGACACCAGTCT 68671 |||| || | || | ||| || || |||||||||||||| ||||||| | ||| |||| Sbjct 2508 CATCTAGGATAGCCATCTGTGGGCGTGTACCCATCTCCTTCACACCACGAATACCTGTCT 2567 Query 68672 TGGCACCGTAGCCCTTGACGATGAAGACCTTCCCGTCCAGGTTCGTGAACTTCCAGCGGA 68731 ||||||| || ||||| || | ||| | || | | ||| | |||| ||| | | Sbjct 2568 TGGCACCATACCCCTTTACTACGAATTTAGTACCATTAATATTCTTAAACTCCCACCTAA 2627 Query 68732 TGTCAGTGAAGTT------GGTTTGGGGGATGTACTTCTTCAGGAACTCGGAGTTCTCCC 68785 | || |||| || || || | ||||||| | |||||| |||||| Sbjct 2628 TATCTGTGAGCTTTAATCCTTCTTTAGGTAGATACTTCTGTAAGAACTCACTACTCTCCC 2687 Query 68786 AGCGGAACTCCAGGTTCTTACGCATGTTCTTCACACCGTTGTCGATGGAGTCCGACACGT 68845 | || |||| | |||||| | ||| ||| | |||||| || || || || || | Sbjct 2688 AACGAGACTCTAAGTTCTTTCTCATTGACTTAATACCGTTATCAATACTATCTGATACAT 2747 Query 68846 ACAGAGCAAGGTCTACCTTACCGAAACCAGGAAGCTCACCGTACAGTGC-AATGTACAGG 68904 |||| | | | |||||||| || || | ||||||| || || || | | Sbjct 2748 ACAGCACTAATTTAACCTTACCAAAGGACGGCATTCTGCCGTACACCGCTAAGATATAAG 2807 Query 68905 AACAGGTACTCACCCATCACGGTAGTCTTGGCCGCACCACGGAAGACCATGTTGGCGATC 68964 | ||||||||| |||| | |||||||| | |||||||| |||| |||||| || | Sbjct 2808 ATAAGGTACTCAGCCATTAGTGTAGTCTTACCTGCACCACGAAAGATCATGTTAGC--TA 2865 Query 68965 CGAGTCT--GGCCAGAGCCAATCTGGTCAAGCATCCGTAGGTGAAGCACTGGTGTCTTGT 69022 || ||| ||| | | || || | |||| || ||||| || |||| || Sbjct 2866 CGTTTCTTAATCCACCATCTAACTTATCTAACATCTTTAAGTGAATAACAGGTGATACGT 2925 Query 69023 TCTCTTCCCCTTCGTTACCGTTGACCATCTTGATGAA-GTCAACGAACTGCAAGGCAAA 69080 |||| || || || ||| || || | ||| || || ||||| ||||| ||| ||||| Sbjct 2926 TCTCCTCACCCTCACCACCATTAACTAGCTTAATAAACGTCAA-GAACTCCAATGCAAA 2983 >seq523594 Length=514 Score = 96.9 bits (106), Expect = 2e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 34538 ATCCAGAAGCGGTCTACGTTGAAGCCAGCTTCAACAGTCCGGCCATCGTTGTAGACACCG 34597 |||||||||||||| |||| ||| || ||||| ||||| || ||||||||||| |||||| Sbjct 512 ATCCAGAAGCGGTCCACGTCGAAACCGGCTTCTACAGTGCGACCATCGTTGTACACACCG 453 Query 34598 AAGCCACCGACCAAACCATTCAC 34620 || ||||| | ||||||||| || Sbjct 452 AAACCACCAATCAAACCATTGAC 430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 232005331137918