Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_027349.1 Length=166977 Score E Sequences producing significant alignments: (Bits) Value seq449735 205 1e-47 seq506238 134 1e-26 seq509673 127 2e-24 seq351952 91.5 2e-13 seq487923 89.7 5e-13 seq326422 86.0 7e-12 >seq449735 Length=3187 Score = 205 bits (226), Expect = 1e-47 Identities = 406/593 (68%), Gaps = 15/593 (3%) Strand=Plus/Minus Query 139361 AACAGTTCACGTGCTTTAATACGCTTTTTACGAAT--ATTAGGGTCTTTTTCTGCGGCTT 139418 ||||||||| |||||||| || ||||||||||| ||| | |||| ||| | Sbjct 611 AACAGTTCAATAGCTTTAATGCGTTTTTTACGAATTGATTCG--TCTTGTTCGTATTTTA 554 Query 139419 CGTATAATTCACGG-AAACG-GTCTTGGTCTTTAAAATAAGAATAATAAAGCTCGCCACC 139476 | |||| | || |||| ||||||||||| |||| | | || ||||| ||| Sbjct 553 C--ATAAAGCGCGTCAAACTCGTCTTGGTCTTCAAAAAATGCATCGTAAAG---GCCTGG 499 Query 139477 CATTTCATGCGGACTGAACAAAGTAATGTAGTCGTTCTTTCCAAAACGTTCCATCATCAA 139536 || ||| || || ||||| ||||||||||||| || ||||| ||| | Sbjct 498 CACATCAGAGGGGCTAAACAAGGTAATGTAGTCGTCTTTAATTAAACGCGAGTACATTAG 439 Query 139537 ATCATTCAGCTGGACGCCATAATCCATATGACGGATACGGTTTTCTTCTACGCCTTTGTT 139596 | ||| | ||| ||||| ||||| | |||||| | ||||| || || || || ||| Sbjct 438 TTTATTAAACTGTACGCCGTAATCTAAATGACGCACGCGGTTGTCATCAACCCCGCGGTT 379 Query 139597 ATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATA--ATAAGCAGTA 139654 |||||| | || | || ||||| ||||| |||||||||| || || | ||| || Sbjct 378 ATTTTTAAGTACTAACAGGTTTTCTACTTCTAAATGCCAAAGCGGGTAGAACAAG--GTT 321 Query 139655 GCAGCGCCGCCACGAATTCCGCCCTGTGAACACGATTTAACAGCAGTCTGAAAATGTTTC 139714 || ||||||||||| | ||||| || ||||| |||||| || || ||||| || || Sbjct 320 GCTGCGCCGCCACGTACACCGCCTTGCGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTA 261 Query 139715 CAAAAAGGAATAACACCAGTATGACGCACTTCACCTGTGCCAATCTTAGAACCTTCGGCA 139774 ||||||||||| ||| ||||| | |||| || ||| ||| | ||| ||| Sbjct 260 TAAAAAGGAATACAACCCGTATGGTACGCTTCGCCATTGCGAATGTGGCTACCCAGTGCA 201 Query 139775 CGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAATTGAA 139834 ||||| ||| ||||||| ||||| || || |||| || | |||| |||||||| | Sbjct 200 CGAATGCGACCTGCGTTAATGCCAATGCCGGCACGTTGCGATACGTATTTAACAATTGCA 141 Query 139835 GCAGAAGCCTTATTGATAGACTTCAGCGAATCACCTGCCTCAATAACAACACATGAACTA 139894 | || | || || || | || || || ||| || | ||||| || ||| Sbjct 140 GACGAGGTGGCGTTAATTGAATCAAGGCTGTCGCCACACTCTATTAATACACACGAGCTA 81 Query 139895 AACTGCCGAGTTGGAGTACGACAACCAGCCATAATAGGAGTTGGCAATGAAAT 139947 ||||| || ||||| |||||| ||| |||||||| || || || | |||||| Sbjct 80 AACTGGCGTGTTGGCGTACGAACACCTGCCATAATTGGCGTAGGTAGTGAAAT 28 >seq506238 Length=275 Score = 134 bits (148), Expect = 1e-26 Identities = 140/184 (76%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 60697 ATTACAAACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 60756 ||||||| | || ||||| ||||| | | ||||| |||| ||||| || || | | Sbjct 38 ATTACAATGTTTCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATG 97 Query 60757 AGTTAAAGCGAACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 60816 ||||||| || ||||| || || |||||||| || || | || ||||||||||| || | Sbjct 98 AGTTAAAACGCACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGT 157 Query 60817 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCAC 60876 | ||||| |||||||||| ||||||||||| | || || ||||| | |||||||||| Sbjct 158 GTTTAACAGCATCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTTGACCAC 217 Query 60877 CCTC 60880 | || Sbjct 218 CTTC 221 >seq509673 Length=441 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 139540 ATTCAGCTGGACGCCATAATCCATATGACGGATACGGTTTTCTTCTACGCCTTTGTTATT 139599 ||| | ||| ||||| |||||||||||||||| |||||| ||||| ||||| |||||| Sbjct 221 ATTTAACTGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTATT 280 Query 139600 TTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGC 139659 ||||| || | | |||||||| |||||||| | || ||| | || || || Sbjct 281 TTTCAGTACCAATAATGACTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCGCTGC 340 Query 139660 GCCGCCACGAATTCCGCCCTGTGAACACGATTTAACAGCAGTCTGAAAATGTTTCCAAAA 139719 |||||||| | ||||| ||||| || ||||||||||||| || || |||| | || Sbjct 341 ACCGCCACGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTTATAGAA 400 Query 139720 AGGAATAACACCAGTATGACGCACTTCACC 139749 || ||| ||| ||||| || |||| || Sbjct 401 TGGGATACAACCCGTATGCTGCGCTTCGCC 430 >seq351952 Length=416 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 60711 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 60770 ||||||||||| | ||| || || ||| ||||| | ||| | |||||||| || ||| Sbjct 34 GTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGAGTTAAATCGTACT 93 Query 60771 GCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 60830 || || || |||||||| || || | || ||||| || || |||| | | |||||| Sbjct 94 GCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATTTTCCATTGCATCC 153 Query 60831 TCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACCCTCAAT 60883 | ||||||| || || || ||||| | |||||||||||| ||||| Sbjct 154 AATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACCTTCAAT 206 >seq487923 Length=1072 Score = 89.7 bits (98), Expect = 5e-13 Identities = 144/201 (72%), Gaps = 7/201 (3%) Strand=Plus/Minus Query 23323 ATACTAATTTATCTAGTACGTATTTTTGCCATGCATAATCATTACGGAATCCGAAGACCA 23382 ||| |||||||| || | || || |||||||| ||||||||| |||||||| || Sbjct 528 ATAGTAATTTATATA---CATACTTATGCCATGCTAAATCATTACCAAATCCGAATACTG 472 Query 23383 CGTCATTTGAGCGCATGTTTACTAC-TGCATTGACTTTCTTATCACGAATCAGGTACT-G 23440 ||||| ||||||| || || | | ||| | ||| ||||||||||| | |||| | Sbjct 471 CGTCACATGAGCGCTGATTGACAATATAGATTAA-TTTATTATCACGAATAAA-TACTTG 414 Query 23441 TACTGTATTCGTACACATGAAATCTGACATACCATCTTTGTTGTAGTCAAACTGCATGGA 23500 || |||| ||||| || ||||||||||| ||| | || | ||| || || || Sbjct 413 AACATTATTAGTACAAATAAAATCTGACATTTCATTAGTATTCCATTCACTTTGAATAGA 354 Query 23501 TGGACGAGTATAAATCATGAT 23521 || | |||||||||||| || Sbjct 353 AGGTCTAGTATAAATCATAAT 333 >seq326422 Length=2068 Score = 86.0 bits (94), Expect = 7e-12 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 69944 CATAAATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTA 70003 |||||| |||||||| | | ||||||||| | ||||||||| ||||||| |||||||| Sbjct 323 CATAAACTGGAGCGGGCAGCGGGAATCGAACCCGCATCATCAGCTTGGAAGGCTGAGGTA 382 Query 70004 AT-GCCATTATACGATATCCGC 70024 || ||||||||||||| |||| Sbjct 383 ATAGCCATTATACGATGCCCGC 404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530689370905040