Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_027353.1
Length=167063
Score E
Sequences producing significant alignments: (Bits) Value
seq449735 190 2e-43
seq506238 138 1e-27
seq509673 109 6e-19
seq487923 107 2e-18
seq351952 100 3e-16
seq326422 89.7 5e-13
>seq449735
Length=3187
Score = 190 bits (210), Expect = 2e-43
Identities = 493/741 (67%), Gaps = 23/741 (3%)
Strand=Plus/Minus
Query 140323 TTTGTTGGAATAGCAATTTCACAACACAAGTTACTCTGACGAATAGGTGCCTTTTCACGA 140382
|| ||||| | |||||||| |||| || ||| || |||||||||||| || | |
Sbjct 755 TTAGTTGGTAATGCAATTTCTAAACATAAATTAGATTGGCGAATAGGTGCCACTTTAGCA 696
Query 140383 ATAAACGGAGTATAGTTATTCGTATTATCAATGAACTGCACATAAATCCTTGCTGTTCCT 140442
|| ||||| | | |||| | |||| | || | ||||| | | || | |
Sbjct 695 ATGAACGGGCTGTGCGTATTACAGTGGTCAACGTTTTGTAAGTAAATACGACCGGTACTT 636
Query 140443 GAACGTTCAGTCATGAGCAA---TTCA-AATAGTTCACGGGCTTTAATACGCTTTTTACG 140498
| |||||| || |||| || | || |||||| |||||||| || ||||||||
Sbjct 635 GCACGTTCT----TGCGCAAACATTGAGAACAGTTCAATAGCTTTAATGCGTTTTTTACG 580
Query 140499 AAT--ATTAGGGTCTTTTTCTGCTGCTTCGTATAATTCACGG-AAACG-GTCTTGGTCTT 140554
||| ||| | |||| ||| | | | |||| | || |||| |||||||||||
Sbjct 579 AATTGATTCG--TCTTGTTCGTATTTTAC--ATAAAGCGCGTCAAACTCGTCTTGGTCTT 524
Query 140555 TAAAATAAGAATAATAAAGCTCGCCACCCATTTCATGCGGACTGAACAAAGTAATATAAT 140614
|||| | | || ||||| ||| || ||| || || ||||| ||||| || |
Sbjct 523 CAAAAAATGCATCGTAAAG---GCCTGGCACATCAGAGGGGCTAAACAAGGTAATGTAGT 467
Query 140615 CGTTCTTTCCGAATCGTTCCATCATCAAATCATTCAGCTGAACACCATAATCCATATGAC 140674
||| || || || ||| | | ||| | ||| || || ||||| | |||||
Sbjct 466 CGTCTTTAATTAAACGCGAGTACATTAGTTTATTAAACTGTACGCCGTAATCTAAATGAC 407
Query 140675 GAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCA 140734
| | |||||| || || || || ||||||||| | || | || ||||| ||||| |
Sbjct 406 GCACGCGGTTGTCATCAACCCCGCGGTTATTTTTAAGTACTAACAGGTTTTCTACTTCTA 347
Query 140735 AATGCCAAATAGGATA--ATAAGCAGTAGCAGCGCCGCCACGAATTCCACCCTGTGAGCA 140792
||||||||| || || | ||| || || ||||||||||| | || || || || ||
Sbjct 346 AATGCCAAAGCGGGTAGAACAAG--GTTGCTGCGCCGCCACGTACACCGCCTTGCGAACA 289
Query 140793 TGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAATAACACCAGTATGGCGTACTTC 140852
|||||| || || ||||| || || ||||||||||| ||| |||||| ||||
Sbjct 288 GCTTTTAACCGCTGTTTGAAAGTGCTTATAAAAAGGAATACAACCCGTATGGTACGCTTC 229
Query 140853 ACCCATGCCAATCTTAGAACCTTCGGCACGAATCATACCAACGTTAATACCAATTCCAGC 140912
|| ||| ||| | ||| |||||||| ||| ||||||| ||||| || ||
Sbjct 228 GCCATTGCGAATGTGGCTACCCAGTGCACGAATGCGACCTGCGTTAATGCCAATGCCGGC 169
Query 140913 ACGTTTGGAGATATATTCAACAATTGAAGCGGAAGCCTTATTGATAGACTTTAATGAATC 140972
||||| || | |||| |||||||| || || | || || || | | ||
Sbjct 168 ACGTTGCGATACGTATTTAACAATTGCAGACGAGGTGGCGTTAATTGAATCAAGGCTGTC 109
Query 140973 ACCTGCCTCAATAACAACACATGAACTAAACTGTCGAGTCGGAGTACGACAACCAGCCAT 141032
|| ||| || | ||||| || |||||||| || || || |||||| ||| |||||
Sbjct 108 GCCACACTCTATTAATACACACGAGCTAAACTGGCGTGTTGGCGTACGAACACCTGCCAT 49
Query 141033 AATAGGAGTTGGTAATGAAAT 141053
||| || || |||| ||||||
Sbjct 48 AATTGGCGTAGGTAGTGAAAT 28
>seq506238
Length=275
Score = 138 bits (152), Expect = 1e-27
Identities = 141/184 (77%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 61407 ATTACAAACTCTCGGTGAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 61466
||||||| | || || || ||||| | | ||||| |||| ||||| || || | |
Sbjct 38 ATTACAATGTTTCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATG 97
Query 61467 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 61526
||||||| || ||||| ||||| |||||||| || || | || ||||||||||| || |
Sbjct 98 AGTTAAAACGCACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGT 157
Query 61527 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCAC 61586
| ||||| |||||||||| ||||||||||| | || || ||||| | ||||||||||
Sbjct 158 GTTTAACAGCATCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTTGACCAC 217
Query 61587 CTTC 61590
||||
Sbjct 218 CTTC 221
>seq509673
Length=441
Score = 109 bits (120), Expect = 6e-19
Identities = 143/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 140646 ATTCAGCTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATT 140705
||| | ||| || || |||||||||||||| | ||||| ||||| ||||| ||||||
Sbjct 221 ATTTAACTGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTATT 280
Query 140706 TTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGC 140765
||||| || | | |||||||| |||||||| | || ||| | || || ||
Sbjct 281 TTTCAGTACCAATAATGACTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCGCTGC 340
Query 140766 GCCGCCACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAA 140825
|||||||| | || || |||||||| ||||||||||||| || || |||| | ||
Sbjct 341 ACCGCCACGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTTATAGAA 400
Query 140826 AGGAATAACACCAGTATG 140843
|| ||| ||| |||||
Sbjct 401 TGGGATACAACCCGTATG 418
>seq487923
Length=1072
Score = 107 bits (118), Expect = 2e-18
Identities = 150/202 (74%), Gaps = 9/202 (4%)
Strand=Plus/Minus
Query 24236 ATACTAATTTATCTAATACGTATTTTTGCCATGCATAATCATTACGGAATCCGAAGACCA 24295
||| |||||||| |||| || || |||||||| ||||||||| |||||||| ||
Sbjct 528 ATAGTAATTTAT---ATACATACTTATGCCATGCTAAATCATTACCAAATCCGAATACTG 472
Query 24296 CGTCATTTGAGCGCATGCTT-ACTAC-TGCATTGACTTTCTTATCACGAATCAGGTACT- 24352
||||| ||||||| || || || | | ||| | ||| ||||||||||| | ||||
Sbjct 471 CGTCACATGAGCGC-TGATTGACAATATAGATTAA-TTTATTATCACGAATAAA-TACTT 415
Query 24353 GTACTGTATTAGTACACATGAAATCTGACATACCATCTTTATTGTAGTCAAATTGCATGG 24412
| || |||||||||| || ||||||||||| ||| |||| | ||| ||| || |
Sbjct 414 GAACATTATTAGTACAAATAAAATCTGACATTTCATTAGTATTCCATTCACTTTGAATAG 355
Query 24413 ATGGACGAGTATAAATCATGAT 24434
| || | |||||||||||| ||
Sbjct 354 AAGGTCTAGTATAAATCATAAT 333
>seq351952
Length=416
Score = 100 bits (110), Expect = 3e-16
Identities = 126/173 (73%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 61421 GTGAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 61480
|| |||||||| | ||| || || ||| ||||| | ||| | |||||||| || |||
Sbjct 34 GTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGAGTTAAATCGTACT 93
Query 61481 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 61540
|| ||||| |||||||| || || | || ||||| || || |||| | | ||||||
Sbjct 94 GCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATTTTCCATTGCATCC 153
Query 61541 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 61593
| ||||||| || || |||||||| | ||||||||||||||||||
Sbjct 154 AATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACCTTCAAT 206
>seq326422
Length=2068
Score = 89.7 bits (98), Expect = 5e-13
Identities = 91/115 (79%), Gaps = 4/115 (3%)
Strand=Plus/Plus
Query 69362 GCGCTCTACCAAACTGAGCTACAC--GGAGTAAATTAAATTGGAGCGGATAATGAGAATC 69419
|||||||||||| |||||||| | | | | |||| |||||||| | | |||||
Sbjct 291 GCGCTCTACCAA-CTGAGCTATATCAGCATCACCATAAACTGGAGCGGGCAGCGGGAATC 349
Query 69420 GAACTCACATCATCAGATTGGAAGTCTGAGGTAATA-CCATTATACGATATCCGC 69473
|||| | ||||||||| ||||||| ||||||||||| |||||||||||| ||||
Sbjct 350 GAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 530962763178160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |