Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_027356.1 Length=108065 Score E Sequences producing significant alignments: (Bits) Value seq426744 199 3e-46 seq507483 140 2e-28 seq511551 134 9e-27 seq435060 131 1e-25 seq506238 125 5e-24 seq466100 116 3e-21 seq508595 82.4 5e-11 >seq426744 Length=341 Score = 199 bits (220), Expect = 3e-46 Identities = 205/264 (78%), Gaps = 3/264 (1%) Strand=Plus/Plus Query 90284 ACGTTGCAGGTTAACACGCTGAGTAACGTAGTATGCGTCACGCTGTTTGCCAGCTTGGCG 90343 |||||| ||||||| ||| ||||| ||||||||||| ||||| || || |||||||| || Sbjct 78 ACGTTGTAGGTTAAGACGTTGAGTTACGTAGTATGCATCACGTTGCTTACCAGCTTGACG 137 Query 90344 CTCACGTTCAACAGTAACAGCACGCTGACGTGGCATCACGAAGTTATCTTTATAAACAAT 90403 ||||||||| || |||| || ||| ||||| || | |||||||| || ||||| || Sbjct 138 CTCACGTTCTACTGTAATAGTACGTTGACGAGGAACAACGAAGTTCTCACGGTAAACGAT 197 Query 90404 AACTGCGAACTCTTTACCAGCTGCTTTAGCTGGGAAGTACTCAGAAACTACAACCGGCAG 90463 | ||| ||| || | ||||||||||||||||| | |||||||| ||| | || Sbjct 198 AGTACAGAATTCTGAACTGACAGCTTTAGCTGGGAAGTAGTTAGAAACTAGAACTGCTAG 257 Query 90464 ACCATAAATACGACCAACCTGACCCTGCAG-TTTAAC-AG-CATCATTACCAACCTGAGC 90520 ||| || ||||||||||| || || || || |||||| || ||| |||||| || Sbjct 258 ACCGTAGATACGACCAACTTGTCCTTGAAGTTTTAACGAGTTATCCGCACCAACTTGGTT 317 Query 90521 AACATCCTGCCATTCTTCATCTTC 90544 |||||||||||||||||||||||| Sbjct 318 AACATCCTGCCATTCTTCATCTTC 341 >seq507483 Length=1083 Score = 140 bits (154), Expect = 2e-28 Identities = 484/739 (65%), Gaps = 27/739 (4%) Strand=Plus/Plus Query 60399 TACTTATGTTGAGAAGATTCTACTGAGTATTGATGCAGATGGTTGCATT--CGTACTGGT 60456 ||||||||| ||||| || | ||||| ||||||| |||| ||||| || Sbjct 344 TACTTATGTAATTAAGATGTTAGACAACATTGACCGAGATGGT--CATTTACGTACAGGG 401 Query 60457 TTCCATGAACATATGACTACTTCTGGTCGTCTGAGTTCTTCTGGTAAACTGAACCTGCAA 60516 || |||| | ||| ||||| |||||||| ||||| || || ||||| ||| | || Sbjct 402 TTTAGCCAACACACGACCACTTCGGGTCGTCTAAGTTCATCAGGCAAACTTAACTTACAG 461 Query 60517 CAGTTACCACGTGATGAATCTATCATTAAGGGTTGTGTAGTTGCACCACCTGGATACCGT 60576 || | || |||||||| |||| ||||||| ||| | || || || | || || | Sbjct 462 CAACTTCCTCGTGATGATGCTATGGTTAAGGGATGTATTGTAGCTCCTGCGGGCTATAGA 521 Query 60577 GTAATCGCATGGGACTTAACAACTGCGGAAGTTTATTATGCTGCTGTTCTATCTGGTGAT 60636 ||| | || ||| | |||||||||| | | || || | || ||| ||| Sbjct 522 GTAGTAGCCGTGGATATGGAAACTGCGGAAATGTGGGTAGCAGCAGCACTTAGTGGGGAT 581 Query 60637 AGAA-ATATGCAACAAGTATTT-ATTAATATGAGAAATGAACCTGATAAATACCCTGACT 60694 | || | | || |||| ||| | ||||| | | || | || | |||| Sbjct 582 AAAAGACCTACAGAAAGTGTTTTAACGATATGGCTGACAAGTCTATTGTATCTGCCGACT 641 Query 60695 TCCAC---TCTAACATCGCTCACATGGTATTTAAATTGCAATGTGAACCTCGTGATGTTA 60751 ||||| |||| | || |||||||| || || | ||| | | | ||| ||| Sbjct 642 TCCACAGCTCTA---TTGCACACATGGTGTTCAAGCCAAACTGTCTAGCGCATGAA-TTA 697 Query 60752 AAAAGT-TATTCCCAGCTCTGCGTCAAGCAGCTAAGGCAATTACCTTTGGTATTTTGTAC 60810 ||| | | ||||| || | ||||| || |||| || ||| | || |||||| | | | Sbjct 698 AAAGCTATGTTCCCTGCATTACGTCAGGCTTCTAAAGCTATTTCATTCGGTATTCTATTC 757 Query 60811 GGTTCTGGCCCGGCTAAAGTAGCACATTCTGTTAACGAAGCATTGCTAGAACAAGCAGCC 60870 ||| ||| || ||||| |||||| | ||| |||| || | | | || ||| | Sbjct 758 GGTAGTGGACCAGCTAAGGTAGCAGAATCTATTAATGAGTCGCTATTTGAGCAACATGTA 817 Query 60871 AAAACTGGGGAACCATTTGTTGAATGTACTGTTGCAGAT---GCTAAAGAGTACATTGAG 60927 || || ||| || || ||| || || | ||| |||||||| |||||||| Sbjct 818 AAGAC-GGGTTGCCCTTAC--GAACCTATTGATAAAGAAACAGCTAAAGATTACATTGAT 874 Query 60928 ACTTACTTTGGTCAATTCCCACAGCTTAAGCGTTGGATTGATAAGTGCCACGATCAGATC 60987 ||||||| ||| ||||| | || || ||||||||||| || ||| || ||||| Sbjct 875 GTTTACTTTAGTCGTTTCCCTGACCTGAAACGTTGGATTGACGCGTCCCATGAGCAGATT 934 Query 60988 AAGAATCATGGATTTATCTATAGTCACTTTGGTCGTAAACGTCGTCTGCATAATATCCAC 61047 | ||||| ||||| ||||| ||||| || ||||||||| | || | |||||||| | Sbjct 935 CTACAGCATGGGTTTATTTATAGCCACTTCGGACGTAAACGTAGACTACGTAATATCCGC 994 Query 61048 TC--CGAAGACCGTG-GTGTTCAGGGTGAAGA-AATCCGTTCTGGATTTAACGCAATCAT 61103 || || | | | |||| |||||||| | ||||| || || ||||| ||||| Sbjct 995 TCAGCGTCTAGAGAGACTGTT---GGTGAAGAGCTTACGTTCAGGCTTCAACGCTATCAT 1051 Query 61104 TCAGTCTGCTTCTTCTGAT 61122 ||| || || |||||| Sbjct 1052 TCAAGGGGCATCATCTGAT 1070 >seq511551 Length=634 Score = 134 bits (148), Expect = 9e-27 Identities = 265/381 (70%), Gaps = 12/381 (3%) Strand=Plus/Plus Query 44565 TGCTGTGTACGCTACTGAGCTTACTGAAAAAGAGTGTTATGATGCATTCCAAGCCCTAGA 44624 |||||| || || || || | || || |||||| ||||||||| |||||| || || Sbjct 13 TGCTGTTTATGCAACGAAGATGACAGAGAAAGAGACTTATGATGCTTTCCAAAGTCTTGA 72 Query 44625 GTATGAAACTAATTCATTATTTAACTCTAACGGACAGA-CTCCTTTTGTTACGCTTGGCT 44683 ||| |||| ||| | ||| | | || ||||| | | |||||||| ||| | || | Sbjct 73 GTACGAAATTAACACCTTACACACAGCAAATGGACAAAGCCCCTTTTGT-ACGGTAGGTT 131 Query 44684 TTGGGCTAGGACAGGGGTGGGAGGAAAGGATGATTCAGAAAGCCATCCTCCAAAACCGTA 44743 |||| |||| | |||||| | | | ||||||||| ||||||| | |||| Sbjct 132 TTGGTTTAGGTACTTGTTGGGAGTCTAAGCTAATTCAGAAATCCATCCTTGAGGTGCGTA 191 Query 44744 TTAAAGGTTTAGGTGCTGCTGAGTCAACCCCTATCTTCCCTAAACTAGTATTCT--CAGT 44801 ||||||| |||||||| | || || | | |||||||| || ||| || | | Sbjct 192 TTAAAGGCTTAGGTGCATCAAAGAGGACAGCGGTATTCCCTAAGCT--TATCCTAACTAT 249 Query 44802 TAAAGAAGG-ATTAAATAAAAATCCAGG-CGATCCTAACTACGATATAAAACAGCTAGCA 44859 |||||| || | || | ||| |||| || || ||||| |||| |||||| |||| Sbjct 250 TAAAGACGGTGTCAACTTTAAA--CAGGAAGACCCAAACTATAATATTAAACAGTTAGCT 307 Query 44860 CTTGAGTGTTCTGCTACCCGTATGTACCCGGACTATT-TAAGTTACGAGAAAGTTGTAGC 44918 || |||||| | || ||||||||||| || |||| | | ||||| || |||||| Sbjct 308 CTAGAGTGTGCCAGTAAGCGTATGTACCCTGA-TATTATCAACTACGATAAGATTGTAGA 366 Query 44919 TGTTACTGGTGATTTTAAAGC 44939 |||||||||| |||||| || Sbjct 367 GGTTACTGGTGGTTTTAAGGC 387 >seq435060 Length=507 Score = 131 bits (144), Expect = 1e-25 Identities = 323/489 (66%), Gaps = 17/489 (3%) Strand=Plus/Plus Query 60659 TTAATATGAGAAATGAACCTGATAAATACCCTGACTTCCACTCTAACATCGCTCACATGG 60718 |||| |||| | | || ||| || || || ||||||||| |||||| |||||||||| Sbjct 21 TTAAGATGAAAGAAGATCCTACCAAGTATCCCGACTTCCACAGTAACATAGCTCACATGG 80 Query 60719 TATTTAAATTGCAATGTGAACCTCGTGATGTTAAAAAGTTATTCCCAGCTCTGCGTCAAG 60778 | ||||| | | ||| | ||| || ||||| || |||||||||| || | || | Sbjct 81 TGTTTAACCTACCTTGTAAGCCTGAGGAAGTTAAGAAACTATTCCCAGCCCTAAGGCAGG 140 Query 60779 CAGCTAAGGCAATTACCTTTGGTATTTTGTACGGTTCTGGCCCGGCTAAAGTAGCACATT 60838 | || ||||| || || ||||||||| | | |||||| || | || |||||| | Sbjct 141 CTGCGAAGGCGATAACATTTGGTATTCTATTCGGTTCAGGAGCAGCATCTGTAGCAGAGC 200 Query 60839 CTGTTAACGAAGCATTGCTAGAACAAGCAGCCAAAACTGGGGAACCATTTGTTGAATGTA 60898 |||||| ||| ||||||| | || ||| || | ||| |||| Sbjct 201 AAGTTAACTTAGCTAAGCTAGAATTA------------GGTGAAGCA---GCTGATTGTA 245 Query 60899 CTGTTGCAGATGCTAAAGAGTACATTGAGACTTACTTTGGTCAATTCCC-ACAGCTTAAG 60957 || | | || || ||||| || ||||| | ||||| | | | ||| Sbjct 246 CTAAAGAAATCGCCGCAGGTTACATCGAAGTGTACTTCAAGCGGTTCCCTAGACTTAAAG 305 Query 60958 CGTTGGATTGATAAGTGCCACGATCAGATCAAGAATCATGGATTTATCTATAGTCACTTT 61017 || ||||||||| || || ||| | ||| | | |||||||| || | ||||| Sbjct 306 CG-TGGATTGATTCTTGTCATGATGAAATCCGTCAGAAAGGATTTATATACAACCACTTC 364 Query 61018 GGTCGTAAACGTCGTCTGCATAATATCCACTCCGAAGACCGTGGTGTTCAGGGTGAAGAA 61077 || ||||| ||| | | || || ||| || || | || ||| |||| |||| Sbjct 365 GGCCGTAAGCGTAGATTACACAACATCTCTTCTAGCGATAGAGGCGTTGTAGGTGGAGAA 424 Query 61078 ATCCGTTCTGGATTTAACGCAATCATTCAGTCTGCTTCTTCTGATAGTCTCCTTTTAGGT 61137 |||||||| |||||||| || ||||| |||||||| || |||||| | || |||| Sbjct 425 ATCCGTTCAGGATTTAATGCTATCATACAGTCTGCGTCATCTGATCACTTACTGCTAGGA 484 Query 61138 GCTGTAGAT 61146 ||||||||| Sbjct 485 GCTGTAGAT 493 >seq506238 Length=275 Score = 125 bits (138), Expect = 5e-24 Identities = 132/172 (77%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 24590 GTAAATGTACGACTAATAACATCGTTCTGCTGTTCACGCGTCAGTGCGTTAAAACGTACA 24649 ||||||||||| | | || || | ||| ||||| | || | || ||||||||| || Sbjct 52 GTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATGAGTTAAAACGCACT 111 Query 24650 GCGTACCCTGAAACACGGATAGTTAATTGAGGGTATTTTTCAGGATGTTTCTGTGCATC- 24708 ||||| ||||| ||||| ||||||||||| || ||||||||||| ||||| ||||| Sbjct 112 GCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGTGTTTAACAGCATCT 171 Query 24709 -CAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGTTGACCCCCTTC 24759 | || | | ||||||| ||||||||| || |||| |||||||| ||||| Sbjct 172 TCCAATGTT--TCACGACGTAACACATTCACGTTTAAATGTTGACCACCTTC 221 >seq466100 Length=556 Score = 116 bits (128), Expect = 3e-21 Identities = 156/212 (74%), Gaps = 10/212 (5%) Strand=Plus/Plus Query 90977 ATCCGGTTCAACCAACATAGTAAGAATCTTACTGGACATCGGCAGTTCTTCGAACA-GTG 91035 ||| || |||| || |||||||||||||||||| | ||| || || |||||||| | || Sbjct 5 ATCTGGCTCAATCATCATAGTAAGAATCTTACTAGTCATTGGAAGCTCTTCGAATAAGTT 64 Query 91036 CGC--CAACTACTAGCTCTTTCTGCAGGTCACGGATAATACGCTGAGAGAAAATAGTTTC 91093 | |||| | || || |||||| ||||| | ||||| |||||||||||||| || Sbjct 65 ACCTACAACCATTAACT---TCTGCATATCACGTAGGATACGTTGAGAGAAAATAGTCTC 121 Query 91094 ATAGCTTTCACTAGAAACTTCTACAGAAGAGGACT--GATTCACTGCTTTCAGGTGTTTT 91151 ||| | |||||||||||||| | | || ||| ||||| ||||| ||||| | Sbjct 122 GTAGTTCTCACTAGAAACTTCGATACTTGA--ACTTGCGTTCACAGCTTTAAGGTGAGCT 179 Query 91152 TGACCGTGTTCGGTTTCGAATACGCCTTTTTC 91183 | ||| | || |||||| || | |||||||| Sbjct 180 TCACCATATTTGGTTTCAAACATTCCTTTTTC 211 >seq508595 Length=419 Score = 82.4 bits (90), Expect = 5e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 25586 TGGTGCGGGATACGAGAGTCGAACTCGTGTCTACTGGTTGGAAGCCAGTTATTCTAGCCG 25645 |||||||| || |||| |||||||| |||||||| |||||||||||||||||| || Sbjct 354 TGGTGCGGAATTAGAGATTCGAACTCTAATCTACTGGGTGGAAGCCAGTTATTCTA-CCA 296 Query 25646 CTGAACTAATCACGCAT 25662 |||||||||| ||||| Sbjct 295 TTGAACTAATCCCGCAT 279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 343469252716972