Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_027379.1 Length=43642 Score E Sequences producing significant alignments: (Bits) Value seq494738 150 5e-32 seq441498 100 8e-17 seq502596 82.4 2e-11 >seq494738 Length=508 Score = 150 bits (166), Expect = 5e-32 Identities = 317/473 (67%), Gaps = 0/473 (0%) Strand=Plus/Plus Query 37142 GATATCTATGCAGGTGACAAAGCTTCTATCAAAGGCTTTGAGATTCACTATACTTTACGT 37201 |||| |||||||| || | ||| || || || ||||| |||| | || ||| Sbjct 28 GATAAGTATGCAGGAGATAGAGCCTCAATAGAATCTTTTGATGTTCATTGGGTGTTCCGT 87 Query 37202 GGTAGTGATAAATCACCATCAGTTGCATGTTACTCAATTGAAGCTGGTATGCAAGGTGCT 37261 || ||| || || ||||| ||| | |||||||| || || | || || || ||| Sbjct 88 GGAGCTGACAAGTCTCCATCCGTTCCTTGTTACTCTATCGAGTCAGGAGCACAGGGCGCT 147 Query 37262 CGTGCAGATATCATCTTAGCAGACGACGTAGAGTCATTACAAAACTCAAGGACGGCAGCA 37321 ||||| ||||| || | ||||| || | ||||| ||||| ||||| | | | || Sbjct 148 CGTGCTGATATAATAATTGCAGATGATATTGAGTCCTTACAGAACTCTCGTTCAGTTGCT 207 Query 37322 GGTCGTGCTTTGTTAGAGGATTTAACTAAAGAGTTTGAATCTATCAACCAATTTGGTGAT 37381 || |||| | ||| ||| || |||||| || |||||||||||||||||| || Sbjct 208 GGCCGTGAATGGTTGATGGAGCAGACCTTAGAGTTCGAGTCTATCAACCAATTTGGTCAT 267 Query 37382 ATTATCTACCTAGGTACACCTCAAAGTGTTAACTCTATCTACAACAATTTGCCTGCTCGT 37441 ||||| ||| |||| ||||| || || || | |||||||||||| ||||| |||| Sbjct 268 ATTATATACTTAGGCACACCACAGAGCGTGGAGTCTATCTACAACTGGCTGCCTAGTCGT 327 Query 37442 GGTTATCAAATCCGTATATGGCCTGGTCGTTATCCTACTTTAGAGCAAGAAGCATGTTAT 37501 || || | | ||||| ||| | ||| | || |||||| ||| | | ||| Sbjct 328 GGCTACAAGGTTCGTATCTGGACAGGTAGATACCCTACTGCTTCTCAAATGGAGTATTAC 387 Query 37502 GGTGACTTCCTAGCTCCTATGATTAAGCAGGATATGACAGAAGACCCTAGCTTACGTCAT 37561 ||| |||| ||| | || | || || | | | |||||||| ||||| | Sbjct 388 AAGGACAAAATAGCACCTCTTATATACCATGACTTAATACAAGACCCTTCCTTACAGGTT 447 Query 37562 GGTTATGGTATTGATGGAACACAAGGTGCTCCTACTTGTCCTGAGATGTATGA 37614 || |||||||||||| || || ||||||||||| |||||||| || Sbjct 448 GGCGGTGGTATTGATGGCACTATGGGACAGCCTACTTGTCCAGAGATGTACGA 500 >seq441498 Length=539 Score = 100 bits (110), Expect = 8e-17 Identities = 202/297 (68%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 37442 GGTTATCAAATCCGTATATGGCCTGGTCGTTATCCTACTTTAGAGCAAGAAGCATGTTAT 37501 |||||| || | ||||| ||| | || ||||| ||||| || || || || || Sbjct 24 GGTTATAAAGTTCGTATCTGGACAGGGCGTTACCCTACAAATGAACAGCTAGAATACTAC 83 Query 37502 GGTGACTTCCTAGCTCCTATGATTAAGCAGGATATGACAGAAGA-CCCTAGCTTACGTCA 37560 ||||| ||||||||||| ||| || ||| | | | || | ||| | |||| Sbjct 84 GGTGATAAACTAGCTCCTATTATTCGTCATGATTT-AGATAACAACCCAATGTTACAGAT 142 Query 37561 TGGTTATGGTATTGATGGAACACAAGGTGCTCCTACTTGTCCTGAGATGTATGACGATGA 37620 ||| |||| ||||||| | || ||||| || ||||| |||||| | |||| Sbjct 143 AGGTGGTGGTCTTGATGGCTCTATGGGACAGCCTACCTGCCCTGAAATGTATACCAATGA 202 Query 37621 GAAGCTTATTGAGAAGGAGATATCACAAGGTACAGCTAAGTTCCAGTTACAGTTTATGCT 37680 | | | ||||||||| | |||| |||| |||||||||| | ||||||||||||| Sbjct 203 TATCTTGAATGAGAAGGAATTGGCACAGGGTAAAGCTAAGTTCATGCTACAGTTTATGCT 262 Query 37681 CAATACAAGACTGCTGGACGCTGACAGATATCCTTTAAAACTCAATCAGTTAATCAT 37737 ||||| |||| || || ||||||| || | ||||| | | | |||||||| Sbjct 263 TAATACTGGACTTGCAGATGCAGACAGATTCCCACTCAAACTAAGTGACTTAATCAT 319 >seq502596 Length=783 Score = 82.4 bits (90), Expect = 2e-11 Identities = 142/201 (71%), Gaps = 9/201 (4%) Strand=Plus/Plus Query 19298 AGCTGGTCACAAAGGTTGGCGACAAACTAAGATAGTGCGCAG-TGTAACTTATGACTTAC 19356 |||||| || ||||| ||||| | | |||| || || | ||| | ||||||||||| Sbjct 296 AGCTGGACATAAAGGCTGGCGCAAGATGAAGAAGGTTCGTGGCTGTGA-TTATGACTTAC 354 Query 19357 TATGTATCGGATATGAAGAAGGCAAAGGTAAGTACAAAGGTAAAGTTGCAAACTTAGTAT 19416 | ||||| || ||||| ||||||| |||||||| ||||| || || || || | | | Sbjct 355 TTTGTATTGGCTATGAGGAAGGCACTGGTAAGTATAAAGGCAAGGTAGCTAATCTGCTGT 414 Query 19417 TTCAATGGCATAAAGGT---AAGACAGTCAAGGCCATGTTAGGAAAAGGCTGGACTCATG 19473 || | ||| |||||| || || |||| || ||| | || | || |||||||||| Sbjct 415 TTAAGTGG---AAAGGTAACAAAACCATCAAAGCTATGCTTGG-CAGGGTTGGACTCATG 470 Query 19474 ATGATGCTGAATTTATGTTTA 19494 | || ||| | |||||| Sbjct 471 CTATGGCAGAAGATTTGTTTA 491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138662068410096