Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_027387.1 Length=38810 Score E Sequences producing significant alignments: (Bits) Value seq512931 138 3e-28 >seq512931 Length=538 Score = 138 bits (152), Expect = 3e-28 Identities = 369/553 (67%), Gaps = 52/553 (9%) Strand=Plus/Plus Query 3016 CCTGCTAGTCCTGACCACT-CTCCTAGTGTGAAGTCAGTAGGTATCACTGGTCAGT-TAA 3073 |||||| ||||||||||| | ||| | |||||||| || ||| | ||||| | || | | Sbjct 1 CCTGCTCGTCCTGACCACAGCCCCTCG-GTGAAGTCCGTGGGTGTTACTGG-CGGTATGA 58 Query 3074 CTGGTAGCCGTGCTGATATTATCATTGCGGATGACGTTGAGATTCCGTCTAACAGTGCAA 3133 |||||||||||||||| || |||||||||||||||||||| | || ||| || | Sbjct 59 CTGGTAGCCGTGCTGACATCCTCATTGCGGATGACGTTGAGGTCCCCGGCAACTCTGGCA 118 Query 3134 CTATGGGTGCCCGTGAAAAGCTATGGACTCTCGTTCAGGAGTTCGCTGCGTTGCTTAAAC 3193 | | || | || | || | || || |||| |||| |||| | || || | Sbjct 119 CACAGTCCGCAAGGGATCACCTTGGCGAGCTGGTAAAGGAATTCGATGCGATCCTGAAGC 178 Query 3194 CACTGCCTACTTCTCGTGTCATCTATCTGGGTACACCTCAAACTGAGATGACTCTCTATA 3253 | || || || ||||||| |||| || || || || || ||||| ||||| | Sbjct 179 C--TG---ACGGTACGA-TCATCTACTTGGGAACCCCACAGACCGAAATGACCCTCTACA 232 Query 3254 AGGAACTTGAAGATAACCGTGGGTACTCCACTATCATCTGGCCTGCTCTGTATCCAAGGA 3313 ||||||||| || ||| || ||||| || | ||||||||||| | || || || Sbjct 233 GGGAACTTGAGGA---CCGCGGCTACTCGACGACGATCTGGCCTGCACGATACCCTCGGG 289 Query 3314 CTCGCGAGGAAAACCT------CTACT---ACTCTCAG------------CGTCTGGCAC 3352 | | || |||| ||||| || | || ||||||| | Sbjct 290 AT---GTGGCTGACCTTGAGTCCTACTGGCACGCCAAGGGCAAGCGCTCACGTCTGGACC 346 Query 3353 ---CAATGCTCC--GTGCTG-AGTACGAGGAGAATCCTGAGGCGCTCGCTGGGACTCCTA 3406 | |||||| | |||| | |||| ||||| | | || ||| |||| Sbjct 347 TTACCATGCTCAAGGAGCTGGAAGACGACGAGAAGCT------GTTCT---GGAAGCCTA 397 Query 3407 CGGACCCTGTGCGCTTCGACCGTGATGACCTGCGTGAGCGTGAGTTGGAATACGGTAAGG 3466 | |||||| | || ||||| ||| |||||||||||||| || | ||| || |||| Sbjct 398 CAGACCCTATTCGATTCGATGATGAAGACCTGCGTGAGCGCGAACTCTCATATGGCAAGG 457 Query 3467 CTGGCTTCACGTTACAGTTCATGCTTAACCCGAACCTGAGTGATGCCGAGAAGTACCCTC 3526 ||||||| | ||||||||||||| ||||||||||| || || |||||||||||| Sbjct 458 GTGGCTTCGCTCTACAGTTCATGCTCAACCCGAACCTTAGCGACATCGAGAAGTACCCGT 517 Query 3527 TGAGGCTCCGTGA 3539 ||| ||| ||||| Sbjct 518 TGAAGCTGCGTGA 530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123296158985328