Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_027388.1 Length=73050 Score E Sequences producing significant alignments: (Bits) Value seq486019 327 5e-85 seq488807 199 2e-46 seq255804 170 9e-38 seq523594 105 3e-18 seq505100 105 3e-18 seq513583 100 1e-16 seq513438 100 1e-16 seq469180 100 1e-16 >seq486019 Length=823 Score = 327 bits (362), Expect = 5e-85 Identities = 474/665 (71%), Gaps = 3/665 (0%) Strand=Plus/Plus Query 70466 TCACCATCCTGGATGAGCCGGTCTTCGTCGGACATGATCTGGAGCATAAGCTCCTGGTTG 70525 |||| ||| || || || || || ||||| |||||||| | | ||||||||| ||||| Sbjct 159 TCACAATCTTGAATTAGACGATCCTCGTCTGACATGATTCGTAACATAAGCTCTTGGTTA 218 Query 70526 AACGTCTCGATCTTCCCTGCCTTCTTGGCCAGGGTGTACTTCTGCAACACGAAGTCGTAG 70585 || || || | ||| |||||||| || ||||| || | || || || | || Sbjct 219 AATGTATCCACCTTACCTGCCTTAAAAGCTTTAGTGTATTTGTCTAAAACAAATTGATAT 278 Query 70586 GTGAATCGGTCAGGCCATGCACCACGGAACTCTTCCCGCGAGCAGGGGAACCGCTCACAT 70645 | ||| || |||||||| ||||| | || |||| | || || || |||| Sbjct 279 GAGAAACGATCAGGCCACGCACCTCTAAAGTCTTTCTCTTCACAAGGAAAATTAGCACAC 338 Query 70646 ACCGGGTAGACGTTGACCTTCCAAGCACCAGACTCCACTGCTTTGTACAATGGATCCTTC 70705 || ||||| ||||| || ||||||||||||||| ||||||||||| |||||||| | Sbjct 339 ACAGGGTACACGTTAACTGCCCAAGCACCAGACTCAACTGCTTTGTATAATGGATCACGC 398 Query 70706 GCGTTGAACGGTGTACCCGACCAGATGATCAT-GTTCTTCTTCGGGTGCAGTGCATAGTC 70764 | ||| || || ||||| |||||||| | | | | | | || |||| | ||| ||||| Sbjct 399 GAGTTAAAGGGAGTACCTGACCAGATTACCTTAGAGCGTATT-GGGTCTAATGCGTAGTC 457 Query 70765 CACTGCCTTGTACACCGTGTCCTCAATGGCTGCGATGACAGTGGGCGAGCGAGCATCTTC 70824 | ||||||||||| || || || | || | || || || | || | |||||||| Sbjct 458 AATAGCCTTGTACACTGTATCTTCTACAGCAGAAATAACTGTAGCTGACCTCGCATCTTC 517 Query 70825 GTCCGAAACCAAGTCATCCAGTACCGCAAGCTGCGGACGTTTACCCATCTCCTTCGCACC 70884 ||||| | |||||||| ||||| |||||| ||||| ||||||||| || ||||| Sbjct 518 ATCCGATATTAAGTCATCTAGTACAGCAAGCACTGGACGAACACCCATCTCTTTAGCACC 577 Query 70885 ACGGACACCAGTCTTGGCACCGTAGCCTTTGACGATGAACACCTTCCCATCCAGGTTGGT 70944 ||| ||||| ||||| || || || ||||| ||||| || || ||||| | ||| | Sbjct 578 ACGTACACCGGTCTTTGCGCCATAACCTTTTACGATAAATCGGTTACCATCAATGTTATT 637 Query 70945 GAACTTCCAACGGATATCAGTGAAGCTGGTTTGGGGGATGTACTTTCTCAGGAACTCGGA 71004 || | ||| || ||||||||||| || || | || | ||||| | || || || Sbjct 638 AAATTCCCAGCGTATATCAGTGAACCTAGTGT-AGGTACATACTTAAGTAAAAATTCTGA 696 Query 71005 GTTCTCCCAACGGAACTCCAGGTTCTTCCGCATGTTCTTCACACCGTTGTCGATGGAGTC 71064 ||| |||||||||||||||| |||||| ||||||||||| |||||||| || || || Sbjct 697 GTTTTCCCAACGGAACTCCAAGTTCTTACGCATGTTCTTAACACCGTTCTCTATACTATC 756 Query 71065 CGACACATACAGAGCTAGGTCTACCTTCCCGAAACCAGGAAGCTCACCGTACAGTGCAAT 71124 || ||||||||||| | | || || || || || || | |||||||| || || Sbjct 757 TGAAACATACAGAGCCAAGGGAACTTTACCAAACCCGGGGATGTCACCGTAACAAGCTAT 816 Query 71125 GTACA 71129 ||||| Sbjct 817 GTACA 821 >seq488807 Length=774 Score = 199 bits (220), Expect = 2e-46 Identities = 352/504 (70%), Gaps = 12/504 (2%) Strand=Plus/Minus Query 70285 CATGTCCTGGCGTTCACAGATACCATCTACCCACAGCCAGTCCT-CGTTGTGGGAGTAG- 70342 |||||| || | || || ||||| |||||||| | ||| | | | | || | || Sbjct 498 CATGTCTTGTTGCTCGCAAATACCGTCTACCCAGAACCA--CGTACCATCTGAGCTAAGC 441 Query 70343 GCCCAGACACTGATGATGCTGAAGTCGCTGGCCTTCTTCGCAGAGGTAGCAAAGTCAGTG 70402 ||||| ||| || | ||| |||||||| |||| || ||||||| ||||| || || Sbjct 440 GCCCATACAGATATTACGCTAAAGTCGCTAGCCTCTTTTTCAGAGGTTGCAAAATCCGTA 381 Query 70403 GTGACGTAGAAGTTGTACCGCTTCTTGT-TGTCCAGCA---CGTTGCGTCGCATGTACCA 70458 |||| ||||||||||||| || |||| | | || | | || ||| || |||||| Sbjct 380 GTGATGTAGAAGTTGTAC-GCGTCTTTACTCTTAAGAAGTGCATTACGT-GC--GTACCA 325 Query 70459 AGCCACCTCACCATCCTGGATGAGCCGGTCTTCGTCGGACATGATCTGGAGCATAAGCTC 70518 | | ||||| ||| | || | | |||||| || ||||| || ||||| | ||| Sbjct 324 ATTAATCTCACTATCTTTAATTAATCTGTCTTCTTCTGACATAATTCTTAGCATCAACTC 265 Query 70519 CTGGTTGAACGTCTCGATCTTCCCTGCCTTCTTGGCCAGGGTGTACTTCTGCAACACGAA 70578 ||||| || | || | ||| ||||| || || |||||| | || || || | Sbjct 264 TTGGTTAAAAGAATCCACCTTACCTGCTTTAACAGCTTTGGTGTATTGCTTCATTACATA 205 Query 70579 GTCGTAGGTGAATCGGTCAGGCCATGCACCACGGAACTCTTCCCGCGAGCAGGGGAACCG 70638 ||| || ||||| || |||||||||| || ||||||||| | || || || || Sbjct 204 GTCATACGTGAAGCGATCAGGCCATGAGCCTTTGAACTCTTCTCTCGTACAAGGAAATTT 145 Query 70639 CTCACATACCGGGTAGACGTTGACCTTCCAAGCACCAGACTCCACTGCTTTGTACAATGG 70698 |||||| || ||||| || || || | |||||| || ||||| ||||||||||||||||| Sbjct 144 CTCACACACAGGGTACACATTTACGTACCAAGCTCCTGACTCAACTGCTTTGTACAATGG 85 Query 70699 ATCCTTCGCGTTGAACGGTGTACCCGACCAGATGATCATGTTCTTCTTCGGGTGCAGTGC 70758 || ||||| ||||| ||||| |||||||| || | ||| | || |||| ||| Sbjct 84 GTCACGGGCGTTAAACGGAGTACCTGACCAGATTATTTTAGACTTGGTAGGATGCAATGC 25 Query 70759 ATAGTCCACTGCCTTGTACACCGT 70782 || |||||||| || || || || Sbjct 24 GTAATCCACTGCTTTATAAACTGT 1 >seq255804 Length=3791 Score = 170 bits (188), Expect = 9e-38 Identities = 474/719 (66%), Gaps = 15/719 (2%) Strand=Plus/Plus Query 70600 CCATGCACCACGGAACTCTTCCCGCGAGCAGGGGAACCGCTCACATACCGGGTAGACGTT 70659 |||||| || |||||||| | | || || ||| |||||||| || || || | Sbjct 2269 CCATGCTCCTTTAAACTCTTCTCTAGTACAAGGAAACTTCTCACATATAGGATATACACT 2328 Query 70660 GACCTTCCAAGCACCAGACTCCACTGCTTTGTACAATGGATCCTTCGCGTTGAACGGTGT 70719 || | ||| |||||||| |||| |||| ||||| ||||| || || || || || || Sbjct 2329 TACATCCCATGCACCAGATTCCATAGCTTCATACAAAGGATCATTAGCATTAAAGGGAGT 2388 Query 70720 ACCCGACCAGATGATCATGTTCTTCTTCGGGTGCAGTGCATAGTCCACTGCCTTGTACAC 70779 ||| ||| || || | |||||| ||||| |||||||| | | |||| || Sbjct 2389 ACCAAGCCATATAGTCTTAGACTTCTTAGGGTGAAGTGCATACTTAATAGCCTGACCTAC 2448 Query 70780 CGTGTCCTCAATGGCTGCGATGACAGTGGGCGAGCGAGCATCTTCGTCCGAAACCAAGTC 70839 ||||| | ||| ||| || || || || || || | || || | ||| ||||| Sbjct 2449 TGTGTCTTTAATAGCTTGAATAACTGTAGGTGAACGTGAGTCATCATTACTAACTAAGTC 2508 Query 70840 ATCCAGTACCGCAAGCTGCGGACGTTTACCCATCTCCTTCGCACCACGGACACCAGTCTT 70899 ||| || | || | ||| || ||| |||||||||||||| ||||||| | ||| ||||| Sbjct 2509 ATCTAGGATAGCCATCTGTGGGCGTGTACCCATCTCCTTCACACCACGAATACCTGTCTT 2568 Query 70900 GGCACCGTAGCCTTTGACGATGAACACCTTCCCATCCAGGTTGGTGAACTTCCAACGGAT 70959 |||||| || || || || | ||| | |||| | || | |||| ||| | || Sbjct 2569 GGCACCATACCCCTTTACTACGAATTTAGTACCATTAATATTCTTAAACTCCCACCTAAT 2628 Query 70960 ATCAGTG------AAGCTGGTTTGGGGGATGTACTTTCTCAGGAACTCGGAGTTCTCCCA 71013 ||| ||| || | || || | ||||| | |||||| ||||||| Sbjct 2629 ATCTGTGAGCTTTAATCCTTCTTTAGGTAGATACTTCTGTAAGAACTCACTACTCTCCCA 2688 Query 71014 ACGGAACTCCAGGTTCTTCCGCATGTTCTTCACACCGTTGTCGATGGAGTCCGACACATA 71073 ||| |||| | |||||| | ||| ||| | |||||| || || || || ||||| Sbjct 2689 ACGAGACTCTAAGTTCTTTCTCATTGACTTAATACCGTTATCAATACTATCTGATACATA 2748 Query 71074 CAGAGCTAGGTCTACCTTCCCGAAACCAGGAAGCTCACCGTACAGTGC-AATGTACAGGA 71132 ||| ||| | ||||| || || || | ||||||| || || || | || Sbjct 2749 CAGCACTAATTTAACCTTACCAAAGGACGGCATTCTGCCGTACACCGCTAAGATATAAGA 2808 Query 71133 ACAGGTACTCACCCATCACGGTGGTCTTCGCTGCACCACGGAACACCATGTTGGCGATCC 71192 ||||||||| |||| | || ||||| |||||||||| || | |||||| || | | Sbjct 2809 TAAGGTACTCAGCCATTAGTGTAGTCTTACCTGCACCACGAAAGATCATGTTAGC--TAC 2866 Query 71193 GGGTCTGA--CCA-GATCCAATCTGGTCAAGCATTCGCAGGTGAAGTACTGGTGTCTTGT 71249 | ||| | ||| ||| || || || | ||| | ||||| || |||| || Sbjct 2867 GTTTCTTAATCCACCATCTAA-CTTATCTAACATCTTTAAGTGAATAACAGGTGATACGT 2925 Query 71250 TCTCTTCCCCTTCGTTGCCGTTGACCATCTTGATGAA-GTCAACGAACTGCAAGGCAAA 71307 |||| || || || || || || | ||| || || ||||| ||||| ||| ||||| Sbjct 2926 TCTCCTCACCCTCACCACCATTAACTAGCTTAATAAACGTCAA-GAACTCCAATGCAAA 2983 >seq523594 Length=514 Score = 105 bits (116), Expect = 3e-18 Identities = 73/83 (88%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 36759 ATCCAGAAGCGGTCTACGTTGAAGCCAGCTTCGACAGTGCGTCCGTCGTTGTACACACCG 36818 |||||||||||||| |||| ||| || ||||| |||||||| || ||||||||||||||| Sbjct 512 ATCCAGAAGCGGTCCACGTCGAAACCGGCTTCTACAGTGCGACCATCGTTGTACACACCG 453 Query 36819 AAGCCACCAACCAAACCATTCAC 36841 || ||||||| ||||||||| || Sbjct 452 AAACCACCAATCAAACCATTGAC 430 >seq505100 Length=723 Score = 105 bits (116), Expect = 3e-18 Identities = 327/502 (65%), Gaps = 12/502 (2%) Strand=Plus/Plus Query 70589 AATCGGTCAGGCCATGCACCACGGAACTCT--TCCCGCGAGCAGGGGAACCGCTCACATA 70646 || |||||| |||||| || |||||| | || | || || ||| |||||||| Sbjct 216 AAGCGGTCATCCCATGCGCCTTTAAACTCTGATTCCTCA--CAAGGAAACTTCTCACATA 273 Query 70647 CCGGGTAGACGTTGACCTTCCAAGCACCAGACTCCACTGCTTTGTACAATGGATCCTTCG 70706 | || || || || | ||||||||||||||| | |||| || || ||||| || | Sbjct 274 CTGGATAAACACCTACATCCCAAGCACCAGACTCAATAGCTTGATATAAAGGATCGTTAG 333 Query 70707 CGTTGAACGGTGTACCCGACCAGATGATCATGTTCTTCTTCGGGTGCAGTGCATAGTCCA 70766 | || || || ||||| ||| || || | ||| | ||||| | ||||| | | Sbjct 334 CATTAAAGGGAGTACCAAGCCATATTCTCTTAGACTTAGTTGGGTGTAACGCATACTTAA 393 Query 70767 CTGCCTTGTACACCGTGTCCTCAATGGCTGCGATGACAGTGGGCGAGCGAGCATCTTCGT 70826 |||| || || |||| ||| | | || |||| || || | | |||||||| Sbjct 394 TAGCCTGACCAACTGTATCCTTAATAGATTGAATAGCAGTAGGTGATCTTGAATCTTCGT 453 Query 70827 CCGAAACCAAGTCATCCAGTACCGCAAGCTGCGGACGTTTACCCATCTCCTTCGCACCAC 70886 |||||||||||||| || ||| ||||||||| |||| || || ||||| Sbjct 454 TACTAACCAAGTCATCCATTATACCAATCTGCGGACGCATACCATATTCTTTAAAACCAC 513 Query 70887 GGACACCAGTCTTGGCACCGTAGCCTTTGACGATGAACACCTTCCCATCCAGGTTGGTGA 70946 | ||||||| ||| ||||| | ||| | || || | |||| || | | Sbjct 514 GAACACCAGACTTAGCACCAAACCCTCTTACACAAAATTTACTACCATTGGTATTCATAA 573 Query 70947 ACTTCCAACGGATATCAGTGAAGCTGGT------TTGGGGGATGTACTTTCTCAGGAACT 71000 ||| |||||| ||||||| || || | || || ||||| || | ||||| Sbjct 574 ACTCCCAACGCTTATCAGTAAATCTCATATTCTCTTCTGGTATGTATTTAAGTAAGAACT 633 Query 71001 C-GGAGTTCTCCCAACGGAACTCCAGGTTCTTCCGCATGTTCTTCACACCGTTGTCGATG 71059 | | |||| ||| |||| | |||||| | ||| || | |||||||| || ||| Sbjct 634 CACTATTTCT-AATACGAGACTCTAAGTTCTTTCTCATATTACTAACACCGTTCTCCATG 692 Query 71060 GAGTCCGACACATACAGAGCTA 71081 || || || | ||||||| ||| Sbjct 693 GAATCAGAAATATACAGACCTA 714 >seq513583 Length=228 Score = 100 bits (110), Expect = 1e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 70811 GAGCGAGCATCTTCGTCCGAAACCAAGTCATCCAGTACCGCAAGCTGCGGACGTTTACCC 70870 ||||| |||||||| || || | || || |||||||| ||||| || ||||||||| Sbjct 212 GAGCGTGCATCTTCATCTGATATTAAATCGTCCAGTACAGCAAGTACAGGTCGTTTACCC 153 Query 70871 ATCTCCTTCGCACCACGGACACCAGTCTTGGCACCGTAGCCTTTGACGATGAACACCTTC 70930 || || || |||||||| ||||| || || || || |||||||| || || || || Sbjct 152 ATTTCTTTTGCACCACGCACACCCGTTTTAGCTCCATAGCCTTTCACTATAAAACGATTA 93 Query 70931 CCATCCAGGTTGGTGAACTTCCAACGGATATCAGTGAA 70968 ||||| | ||| | || | |||||| ||||| || || Sbjct 92 CCATCTACGTTATTAAATTCCCAACGTATATCTGTAAA 55 >seq513438 Length=501 Score = 100 bits (110), Expect = 1e-16 Identities = 238/356 (67%), Gaps = 8/356 (2%) Strand=Plus/Minus Query 71022 CCAGGTTCTTCCGCATGTTCTTCACACCGTTGTCGATGGAGTCCGACACATACAGAGCTA 71081 ||| ||| || ||||| ||||| || || || || ||| || || || || || || | Sbjct 501 CCAAGTTTTTACGCATATTCTTAACGCCATTCTCAATGCTATCTGATACGTATAGCGCCA 442 Query 71082 GGTCTACCTTCCCGAAACCAGGAAGCTCACCGTACAGTGCAATGTACAGGAACAGGTACT 71141 | || || ||||| || || | | ||||||| | | |||||||| ||||||| Sbjct 441 AGGGAACTTTACCGAATCCCGGGATTGCTCCGTACACGCCTAAATACAGGAATAGGTACT 382 Query 71142 CACCCATCACGGTGGTCTTCGCTGCACCACGGA-ACACCATGTTGGCGATCCGGG---TC 71197 |||| | || | ||||| | |||||| ||| | ||| | | || || Sbjct 381 CACCAAATACTGCTGTCTTGCCCAAACCACGATGACAT-AGGTTTATGGTATTGGCTTTC 323 Query 71198 TGACCAGATCCAATCTGGTCAAGCATTCGCAGGTGAAGTACTGGTGTCTTGTTCTCTTCC 71257 || ||| | | ||| || | ||||| ||||||| |||||| || ||||| ||||| Sbjct 322 TGGCCACTTAC---CTGATCCAACATTCTAAGGTGAACTACTGGCGTTTTGTTTTCTTCA 266 Query 71258 CCTTCGTTGCCGTTGACCATCTTGATGAAGTCAACGAACTGCAAGGCAAAGATGCTGGGG 71317 || || |||||| ||||| || |||||| |||||||| | ||||| ||||| Sbjct 265 CCGTCTGAGCCGTTTACCATTTTAATGAAGGTAACGAACTCTACTGCAAACTCACTGGGT 206 Query 71318 ATGTACGAAGAGTCATCCCCATAGACTACTTCACGAAGCCATTGCTCTACAGACTT 71373 || || || ||| | | |||| ||| || || |||||||||||| | ||| Sbjct 205 ATATAGCAATCGTCGTACGAATAGTTTACGTCGTTAATCCATTGCTCTACCGTCTT 150 >seq469180 Length=838 Score = 100 bits (110), Expect = 1e-16 Identities = 265/401 (66%), Gaps = 3/401 (1%) Strand=Plus/Minus Query 66579 TCAGCAGTGGAGATGTCCAGCTTGAGATCGAAGTTACCAGCAAGGTCATCCCTGCGGATA 66638 |||| ||| || || ||||| | ||| |||||||||||||||||||| | ||| Sbjct 422 TCAGTAGTAGATATAGTTAGCTTAACATCAAAGTTACCAGCAAGGTCATCACGTTTAATA 363 Query 66639 TCCACGAAGTGCTCGTTGGTGATCCGTACCACTTCCACATCGTCCAGGAACTCAGCGTTC 66698 ||||| | |||| || || |||| ||||| | || || | |||| |||||| Sbjct 362 GTAACGAACTCTTCGTCAGTAATTCGTATAACTTCTTCTTCTTCTAAGAACAAGGCGTTC 303 Query 66699 ATGGCGATGATCTTCCGCCCGATCTCGATGATCCCAGCAGAGAGGCGGCGAAGGATTCCA 66758 || || ||||| || || ||||| || || ||| | | || | ||| || Sbjct 302 ATACTTATAATCTTACGGCCAATCTCTTCAATGCCTGCACCTA-TCTACGTAAGATACCT 244 Query 66759 AGCTCACGCTTCGATGCAGCATCCAATGCACCACGTACAGCAGTAGCGGTATCACCGAGT 66818 | |||||| || || |||| |||| ||||||||| || | | | |||||||| | | Sbjct 243 ATCTCACGTTTAGAAGCAGAGTCCATTGCACCACGAGCATTACCAACAGTATCACCAAAT 184 Query 66819 GCAGCACCGGAGATGCCAGCGTTGAAAGCCTTCACACCAGTCATGGATTCAGCTTCTGCC 66878 ||| |||| | |||| | || || || | ||| || | ||||||||||| Sbjct 183 GCATCACCACTTACACCAGTACTAAATGCTTTGATACCTGTTAATGATTCAGCTTCATTG 124 Query 66879 TGTTGCAGGTTGATCATGTAC-TGAGCGGACTGAGGGATCTCCGGGAAGGTGTGCATGTG 66937 ||||||| | | ||| ||| |||| ||||| | | ||| || | | ||||||| Sbjct 123 TGTTGCATACTAAGCAT-TACAGGAGCTGACTGTGAAAGCTCAGGATACTTATGCATGTA 65 Query 66938 CACAGCAGCCCGTGGGTCTGCACCAGGGTTGAACTCGTAGT 66978 | || | ||| || ||||| |||| ||||||||| Sbjct 64 AAATGCTTTACTTGGATCAACACCACCGTTGTACTCGTAGT 24 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 232138870365642