Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_027390.1 Length=45169 Score E Sequences producing significant alignments: (Bits) Value seq494738 143 8e-30 seq441498 100 8e-17 seq502596 89.7 1e-13 >seq494738 Length=508 Score = 143 bits (158), Expect = 8e-30 Identities = 312/467 (67%), Gaps = 0/467 (0%) Strand=Plus/Plus Query 37845 TATGCAGGTGACAAAGCTTCTATAAAAGGCTTTGAGATTCACTATACTTTACGTGGTAGT 37904 |||||||| || | ||| || ||| || ||||| |||| | || ||||| | Sbjct 34 TATGCAGGAGATAGAGCCTCAATAGAATCTTTTGATGTTCATTGGGTGTTCCGTGGAGCT 93 Query 37905 GATAAATCACCATCAGTTGCATGTTACTCAATTGAAGCTGGTATGCAAGGTGCGCGTGCA 37964 || || || ||||| ||| | |||||||| || || | || || || || ||||| Sbjct 94 GACAAGTCTCCATCCGTTCCTTGTTACTCTATCGAGTCAGGAGCACAGGGCGCTCGTGCT 153 Query 37965 GATATCATCTTAGCAGACGACGTAGAGTCATTACAGAACTCAAGGACGGCAGCAGGTCGT 38024 ||||| || | ||||| || | ||||| ||||||||||| | | | || || ||| Sbjct 154 GATATAATAATTGCAGATGATATTGAGTCCTTACAGAACTCTCGTTCAGTTGCTGGCCGT 213 Query 38025 GCTTTGTTAGAGGATTTAACTAAAGAGTTTGAATCTATCAACCAATTTGGTGATATTATC 38084 | | ||| ||| || |||||| || |||||||||||||||||| ||||||| Sbjct 214 GAATGGTTGATGGAGCAGACCTTAGAGTTCGAGTCTATCAACCAATTTGGTCATATTATA 273 Query 38085 TACCTAGGTACACCTCAAAGTGTTAACTCTATCTACAACAATTTACCTGCTCGTGGTTAT 38144 ||| |||| ||||| || || || | |||||||||||| | ||| |||||| || Sbjct 274 TACTTAGGCACACCACAGAGCGTGGAGTCTATCTACAACTGGCTGCCTAGTCGTGGCTAC 333 Query 38145 CAAATCCGTATATGGCCGGGTCGTTATCCTACTTTAGAGCAAGAAGCATGTTATGGTGAC 38204 | | ||||| ||| | ||| | || |||||| ||| | | ||| ||| Sbjct 334 AAGGTTCGTATCTGGACAGGTAGATACCCTACTGCTTCTCAAATGGAGTATTACAAGGAC 393 Query 38205 TTCCTAGCTCCTATGATTAAGCAGGATATGACAGAAGACCCTAGCTTACGTCACGGTTAT 38264 |||| ||| | || | || || | | | |||||||| ||||| || | Sbjct 394 AAAATAGCACCTCTTATATACCATGACTTAATACAAGACCCTTCCTTACAGGTTGGCGGT 453 Query 38265 GGTATTGATGGAACACAAGGTGCGCCTACTTGCCCTGAGATGTATGA 38311 ||||||||||| || || ||||||||| || |||||||| || Sbjct 454 GGTATTGATGGCACTATGGGACAGCCTACTTGTCCAGAGATGTACGA 500 >seq441498 Length=539 Score = 100 bits (110), Expect = 8e-17 Identities = 202/297 (68%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 38139 GGTTATCAAATCCGTATATGGCCGGGTCGTTATCCTACTTTAGAGCAAGAAGCATGTTAT 38198 |||||| || | ||||| ||| | || ||||| ||||| || || || || || Sbjct 24 GGTTATAAAGTTCGTATCTGGACAGGGCGTTACCCTACAAATGAACAGCTAGAATACTAC 83 Query 38199 GGTGACTTCCTAGCTCCTATGATTAAGCAGGATATGACAGAAGA-CCCTAGCTTACGTCA 38257 ||||| ||||||||||| ||| || ||| | | | || | ||| | |||| Sbjct 84 GGTGATAAACTAGCTCCTATTATTCGTCATGATTT-AGATAACAACCCAATGTTACAGAT 142 Query 38258 CGGTTATGGTATTGATGGAACACAAGGTGCGCCTACTTGCCCTGAGATGTATGACGATGA 38317 ||| |||| ||||||| | || |||||| |||||||| |||||| | |||| Sbjct 143 AGGTGGTGGTCTTGATGGCTCTATGGGACAGCCTACCTGCCCTGAAATGTATACCAATGA 202 Query 38318 GAAGCTTATTGAGAAGGAGATATCACAAGGTACAGCTAAGTTTCAGTTACAGTTTATGCT 38377 | | | ||||||||| | |||| |||| ||||||||| | ||||||||||||| Sbjct 203 TATCTTGAATGAGAAGGAATTGGCACAGGGTAAAGCTAAGTTCATGCTACAGTTTATGCT 262 Query 38378 CAACACAAGACTACTGGACGCTGACAGATATCCTTTAAAACTCAATCAGTTAATCAT 38434 || || |||| || || ||||||| || | ||||| | | | |||||||| Sbjct 263 TAATACTGGACTTGCAGATGCAGACAGATTCCCACTCAAACTAAGTGACTTAATCAT 319 >seq502596 Length=783 Score = 89.7 bits (98), Expect = 1e-13 Identities = 131/180 (73%), Gaps = 9/180 (5%) Strand=Plus/Plus Query 20233 AGCTGGTCATAAAGGTTGGAGACAAACTAAGATAGTACGCAG-TGTAACTTATGACTTAC 20291 |||||| |||||||| ||| | | | |||| || || | ||| | ||||||||||| Sbjct 296 AGCTGGACATAAAGGCTGGCGCAAGATGAAGAAGGTTCGTGGCTGTGA-TTATGACTTAC 354 Query 20292 TATGTATCGGATATGAAGAAGGTAAAGGTAAGTACAAAGGTAAAGTTGCAAACTTAATAT 20351 | ||||| || ||||| ||||| | |||||||| ||||| || || || || | | | Sbjct 355 TTTGTATTGGCTATGAGGAAGGCACTGGTAAGTATAAAGGCAAGGTAGCTAATCTGCTGT 414 Query 20352 TTCAATGGCATAAAGGT---AAGACAGTCAAAGCTATGTTAGGCAAAGGCTGGACTCATG 20408 || | ||| |||||| || || ||||||||||| | ||| | || |||||||||| Sbjct 415 TTAAGTGG---AAAGGTAACAAAACCATCAAAGCTATGCTTGGC-AGGGTTGGACTCATG 470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143517975631044