Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_027398.1 Length=38742 Score E Sequences producing significant alignments: (Bits) Value seq513023 152 1e-32 seq520028 98.7 2e-16 seq445849 93.3 1e-14 seq497495 87.8 4e-13 >seq513023 Length=489 Score = 152 bits (168), Expect = 1e-32 Identities = 285/415 (69%), Gaps = 4/415 (1%) Strand=Plus/Plus Query 2023 GAGCATTACCCGCGCTTTGAACTGAATAAGATTGCCCGTGAATGTGATCGCATCATTGGC 2082 ||| |||||||||||||||| || || || | ||||| || |||||||||||||| Sbjct 52 GAGAATTACCCGCGCTTTGAGCTTAACAAAGTAGCCCGCGAGTGTGATCGCATCATATCT 111 Query 2083 GAGTATCGACAGAATCGCATCAGCGTTAAATTCAGACCGAAGGACGATAAGGCATCGGAA 2142 ||||| ||| || | || || || | ||| | || || || | || || ||| Sbjct 112 GAGTACCGAAAGCAGCGTATATCTGTAAGATTTCGCCCTAATGATACTGAGTCAAGCGAA 171 Query 2143 GCGTTAGCCGAAAAGATGAACGGCAAATTCCGCGCTGATTATCAGGAAACATCCGGTGGC 2202 | | || | |||||| | ||||| || || || ||||| || || ||| || || Sbjct 172 GAGCTATCAGAAAAGCTTAACGGTAAGTTTCGTGCTGACTACGAGCAAAGCTCAGGAAAT 231 Query 2203 GAAGCGTGTGATAACGCATTTGATGATGCTGTAACGGGCGGATTTGGTTGTTTCCGCATG 2262 || |||| ||||| ||||||||||| |||||| | || || |||||||| ||||| || Sbjct 232 GAGGCGTTCGATAATGCATTTGATGACGCTGTAGCTGGTGGCTTTGGTTGCTTCCGTATC 291 Query 2263 TGTGCCGATTACGAAGATGAAATGGATCCGAGTAACGAGC-AGCGACGCATCAGCCTTC- 2320 ||| |||||| |||||| | || ||| |||| |||| | || | ||| ||| Sbjct 292 GAGGCCACTTACGAGGATGAACTAGACCCGCGTAAAGAGCGAATGA--AAACAGTATTCA 349 Query 2321 TTCCTGTTTACGACCCAGCGACATGCGTCTTCTTCGATCAGGACAGCAAGCAATATGACC 2380 ||||| | || | || |||||| | || || || ||| || | || || | Sbjct 350 AGCCTGTGTTTGATGCTGCTCAATGCGTATGGTTTGACCAAGACTCGAAAGAGTACGATC 409 Query 2381 GTTCTGATGCTATGTGGGCTATGGAAATGTTCTCCATGACGCCTAAAGCGTTCGA 2435 | ||||| |||||||| || ||||||||||| ||| |||| | || || || Sbjct 410 GAAGCGATGCAATGTGGGCCATAGAAATGTTCTCTATGGTGCCTGATGCATTTGA 464 >seq520028 Length=356 Score = 98.7 bits (108), Expect = 2e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 2689 CGCCGCGTTTATTGCGGTCTTCTGTCTGGCGCTGAATGGCTGGAAGAACCGAAGCGTATT 2748 ||||| ||||| || || || || || || ||||| |||||||| | || ||| Sbjct 189 CGCCGTGTTTACTGTGGACTAATGAGCGGTCAAGAGTGGCTAGAAGAACCAAGCCGCATT 130 Query 2749 CCGGGTGAACATATTCCTCTCATCCCGGTATATGGGCGTCGTTCATTTGTTGATAATCAG 2808 || || || | || || || ||||| || || || || | ||||||||||| | Sbjct 129 CCTGGCGATTACATACCGCTGATCCCCGTTTACGGTAAGCGCTGGTTTGTTGATAACATG 70 Query 2809 GAGAGAATCGAAGGCCACGCAGCAAAAGCGATGGATGCACAGCGTCTTGAGAACCTGATG 2868 ||| | || ||||| |||||||| || || ||||||||||| || || || ||| ||||| Sbjct 69 GAGCGCATAGAAGGTCACGCAGCTAAGGCCATGGATGCACAACGACTAGAAAACTTGATG 10 Query 2869 GTTTCCATG 2877 || || ||| Sbjct 9 GTGTCAATG 1 >seq445849 Length=1010 Score = 93.3 bits (102), Expect = 1e-14 Identities = 144/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 22878 ACCTTCAACAAGAACACTACGGTAGTAATCCGCTTGCGC-TCCCGGCTTGGCAAATACAA 22936 |||||||||||| | ||||| ||||| ||||||| | |||||| ||| | || Sbjct 332 ACCTTCAACAAGTGCCGATCGGTAAAAATCCACTTGCGCCTGTTGGCTTGCGAAA-ATAA 274 Query 22937 CGGCGCTGTAGTTTGTCCATTCTTTCTTTTTTGTCTGGCGATCGTAATACTGAACGCCAG 22996 |||| |||||||||||||||||| | ||||||| ||| || ||||| ||||| || Sbjct 273 CGGCCTCGTAGTTTGTCCATTCTTTTTGCTTTGTCTCGCGGTCATAATATTGAACACCTA 214 Query 22997 CACGGATGTTGAATCCGATATTTTCCCCGGCCTGAAACTCTCTTGCGGGCTTGTTTAGTC 23056 || | | || || || | || || || ||||| | | |||| | ||||||| | Sbjct 213 AGCGAACGCCAAAACCTGTACTGTCGCCAGCTTGAAATTGTGTTGCTGCTTTGTTTAATT 154 Query 23057 TTACAGTAATCGAATGTGCCATT 23079 | | || | |||||||||||| Sbjct 153 TACCCGTTACTGAATGTGCCATT 131 >seq497495 Length=698 Score = 87.8 bits (96), Expect = 4e-13 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 3157 ATGCCGAGCAACGTCGCCACCGATACCGTTGATAGCATCTTTAACCGGATGGATACGCAG 3216 || || |||||| | ||||| || || |||||| || || ||| | |||||||| ||| Sbjct 665 ATACCTAGCAACATAGCCACAGACACAGTTGATTCGATATTCAACAGAATGGATACCCAG 606 Query 3217 TCCTATATCTACATGGACAACATGGCTAAATCCATGCGTCGCGCTGGCGTTGTGTGGCTT 3276 || | || |||||||||||||||||||| || |||||| |||| | |||||| Sbjct 605 TCATTCATATACATGGACAACATGGCTAAGTCGGTGCGTCATTGTGGCAAAGCGTGGCTG 546 Query 3277 TCTATG 3282 |||||| Sbjct 545 TCTATG 540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123079916882496