Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_027398.1
Length=38742
Score E
Sequences producing significant alignments: (Bits) Value
seq513023 152 1e-32
seq520028 98.7 2e-16
seq445849 93.3 1e-14
seq497495 87.8 4e-13
>seq513023
Length=489
Score = 152 bits (168), Expect = 1e-32
Identities = 285/415 (69%), Gaps = 4/415 (1%)
Strand=Plus/Plus
Query 2023 GAGCATTACCCGCGCTTTGAACTGAATAAGATTGCCCGTGAATGTGATCGCATCATTGGC 2082
||| |||||||||||||||| || || || | ||||| || ||||||||||||||
Sbjct 52 GAGAATTACCCGCGCTTTGAGCTTAACAAAGTAGCCCGCGAGTGTGATCGCATCATATCT 111
Query 2083 GAGTATCGACAGAATCGCATCAGCGTTAAATTCAGACCGAAGGACGATAAGGCATCGGAA 2142
||||| ||| || | || || || | ||| | || || || | || || |||
Sbjct 112 GAGTACCGAAAGCAGCGTATATCTGTAAGATTTCGCCCTAATGATACTGAGTCAAGCGAA 171
Query 2143 GCGTTAGCCGAAAAGATGAACGGCAAATTCCGCGCTGATTATCAGGAAACATCCGGTGGC 2202
| | || | |||||| | ||||| || || || ||||| || || ||| || ||
Sbjct 172 GAGCTATCAGAAAAGCTTAACGGTAAGTTTCGTGCTGACTACGAGCAAAGCTCAGGAAAT 231
Query 2203 GAAGCGTGTGATAACGCATTTGATGATGCTGTAACGGGCGGATTTGGTTGTTTCCGCATG 2262
|| |||| ||||| ||||||||||| |||||| | || || |||||||| ||||| ||
Sbjct 232 GAGGCGTTCGATAATGCATTTGATGACGCTGTAGCTGGTGGCTTTGGTTGCTTCCGTATC 291
Query 2263 TGTGCCGATTACGAAGATGAAATGGATCCGAGTAACGAGC-AGCGACGCATCAGCCTTC- 2320
||| |||||| |||||| | || ||| |||| |||| | || | ||| |||
Sbjct 292 GAGGCCACTTACGAGGATGAACTAGACCCGCGTAAAGAGCGAATGA--AAACAGTATTCA 349
Query 2321 TTCCTGTTTACGACCCAGCGACATGCGTCTTCTTCGATCAGGACAGCAAGCAATATGACC 2380
||||| | || | || |||||| | || || || ||| || | || || |
Sbjct 350 AGCCTGTGTTTGATGCTGCTCAATGCGTATGGTTTGACCAAGACTCGAAAGAGTACGATC 409
Query 2381 GTTCTGATGCTATGTGGGCTATGGAAATGTTCTCCATGACGCCTAAAGCGTTCGA 2435
| ||||| |||||||| || ||||||||||| ||| |||| | || || ||
Sbjct 410 GAAGCGATGCAATGTGGGCCATAGAAATGTTCTCTATGGTGCCTGATGCATTTGA 464
>seq520028
Length=356
Score = 98.7 bits (108), Expect = 2e-16
Identities = 135/189 (71%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 2689 CGCCGCGTTTATTGCGGTCTTCTGTCTGGCGCTGAATGGCTGGAAGAACCGAAGCGTATT 2748
||||| ||||| || || || || || || ||||| |||||||| | || |||
Sbjct 189 CGCCGTGTTTACTGTGGACTAATGAGCGGTCAAGAGTGGCTAGAAGAACCAAGCCGCATT 130
Query 2749 CCGGGTGAACATATTCCTCTCATCCCGGTATATGGGCGTCGTTCATTTGTTGATAATCAG 2808
|| || || | || || || ||||| || || || || | ||||||||||| |
Sbjct 129 CCTGGCGATTACATACCGCTGATCCCCGTTTACGGTAAGCGCTGGTTTGTTGATAACATG 70
Query 2809 GAGAGAATCGAAGGCCACGCAGCAAAAGCGATGGATGCACAGCGTCTTGAGAACCTGATG 2868
||| | || ||||| |||||||| || || ||||||||||| || || || ||| |||||
Sbjct 69 GAGCGCATAGAAGGTCACGCAGCTAAGGCCATGGATGCACAACGACTAGAAAACTTGATG 10
Query 2869 GTTTCCATG 2877
|| || |||
Sbjct 9 GTGTCAATG 1
>seq445849
Length=1010
Score = 93.3 bits (102), Expect = 1e-14
Identities = 144/203 (71%), Gaps = 2/203 (1%)
Strand=Plus/Minus
Query 22878 ACCTTCAACAAGAACACTACGGTAGTAATCCGCTTGCGC-TCCCGGCTTGGCAAATACAA 22936
|||||||||||| | ||||| ||||| ||||||| | |||||| ||| | ||
Sbjct 332 ACCTTCAACAAGTGCCGATCGGTAAAAATCCACTTGCGCCTGTTGGCTTGCGAAA-ATAA 274
Query 22937 CGGCGCTGTAGTTTGTCCATTCTTTCTTTTTTGTCTGGCGATCGTAATACTGAACGCCAG 22996
|||| |||||||||||||||||| | ||||||| ||| || ||||| ||||| ||
Sbjct 273 CGGCCTCGTAGTTTGTCCATTCTTTTTGCTTTGTCTCGCGGTCATAATATTGAACACCTA 214
Query 22997 CACGGATGTTGAATCCGATATTTTCCCCGGCCTGAAACTCTCTTGCGGGCTTGTTTAGTC 23056
|| | | || || || | || || || ||||| | | |||| | ||||||| |
Sbjct 213 AGCGAACGCCAAAACCTGTACTGTCGCCAGCTTGAAATTGTGTTGCTGCTTTGTTTAATT 154
Query 23057 TTACAGTAATCGAATGTGCCATT 23079
| | || | ||||||||||||
Sbjct 153 TACCCGTTACTGAATGTGCCATT 131
>seq497495
Length=698
Score = 87.8 bits (96), Expect = 4e-13
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 3157 ATGCCGAGCAACGTCGCCACCGATACCGTTGATAGCATCTTTAACCGGATGGATACGCAG 3216
|| || |||||| | ||||| || || |||||| || || ||| | |||||||| |||
Sbjct 665 ATACCTAGCAACATAGCCACAGACACAGTTGATTCGATATTCAACAGAATGGATACCCAG 606
Query 3217 TCCTATATCTACATGGACAACATGGCTAAATCCATGCGTCGCGCTGGCGTTGTGTGGCTT 3276
|| | || |||||||||||||||||||| || |||||| |||| | ||||||
Sbjct 605 TCATTCATATACATGGACAACATGGCTAAGTCGGTGCGTCATTGTGGCAAAGCGTGGCTG 546
Query 3277 TCTATG 3282
||||||
Sbjct 545 TCTATG 540
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 123079916882496
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |