Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_027404.1 Length=167785 Score E Sequences producing significant alignments: (Bits) Value seq449735 188 8e-43 seq506238 143 3e-29 seq509673 109 6e-19 seq487923 107 2e-18 seq351952 100 3e-16 seq511551 95.1 1e-14 seq326422 87.8 2e-12 >seq449735 Length=3187 Score = 188 bits (208), Expect = 8e-43 Identities = 495/742 (67%), Gaps = 25/742 (3%) Strand=Plus/Minus Query 138555 TTTGTTGGAATAGCAATTTCACAACACAAGTTACTCTGACGAATAGGTGCCTTTTCACGA 138614 || ||||| | |||||||| |||| || ||| || |||||||||||| || | | Sbjct 755 TTAGTTGGTAATGCAATTTCTAAACATAAATTAGATTGGCGAATAGGTGCCACTTTAGCA 696 Query 138615 ATAAACGGAGTATAGTTATTAGTATTATCAATGAACTGTACATAAATCCTTGCTGTTCCT 138674 || ||||| | | ||||| | |||| | |||| ||||| | | || | | Sbjct 695 ATGAACGGGCTGTGCGTATTACAGTGGTCAACGTTTTGTAAGTAAATACGACCGGTACTT 636 Query 138675 GAGCGTTCAGTCATGAGTAA---TTCA-AATAGTTCACGGGCTTTAATACGCTTTTTGCG 138730 | ||||| || | || || | || |||||| |||||||| || ||||| || Sbjct 635 GCACGTTCT----TGCGCAAACATTGAGAACAGTTCAATAGCTTTAATGCGTTTTTTACG 580 Query 138731 AAT--ATTAGGGTCTTTTTCTGCTGCTTCGTATAATTCACGG-AAACG-GTCTTGGTCTT 138786 ||| ||| | |||| ||| | | | |||| | || |||| ||||||||||| Sbjct 579 AATTGATTCG--TCTTGTTCGTATTTTAC--ATAAAGCGCGTCAAACTCGTCTTGGTCTT 524 Query 138787 TAAAATAAGAATAATAAAGCTCTCCACCCATTTCATGCGGACTGAACAAAGTAATGTAAT 138846 |||| | | || ||||| || || ||| || || ||||| |||||||| | Sbjct 523 CAAAAAATGCATCGTAAAGGCCTGG---CACATCAGAGGGGCTAAACAAGGTAATGTAGT 467 Query 138847 CGTTCTTTCCAAAACGTTCCATCATCAAATCATTCAGCTGAACACCATAATCCATATGAC 138906 ||| || ||||| ||| | | ||| | ||| || || ||||| | ||||| Sbjct 466 CGTCTTTAATTAAACGCGAGTACATTAGTTTATTAAACTGTACGCCGTAATCTAAATGAC 407 Query 138907 GAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCA 138966 | | |||||| || || || || ||||||||| | || | || ||||| ||||| | Sbjct 406 GCACGCGGTTGTCATCAACCCCGCGGTTATTTTTAAGTACTAACAGGTTTTCTACTTCTA 347 Query 138967 AATGCCAAATAGGATA--ATAAGCAGTAGCAGCGCCGCCACGAATTCCACCCTGTGAGCA 139024 ||||||||| || || | ||| || || ||||||||||| | || || || || || Sbjct 346 AATGCCAAAGCGGGTAGAACAAG--GTTGCTGCGCCGCCACGTACACCGCCTTGCGAACA 289 Query 139025 TGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAATAACACCAGTATGGCGTACTTC 139084 |||||| || || ||||| || || ||||||||||| ||| |||||| |||| Sbjct 288 GCTTTTAACCGCTGTTTGAAAGTGCTTATAAAAAGGAATACAACCCGTATGGTACGCTTC 229 Query 139085 ACCCATGCCAATCTTAGAACCTTCGGCACGAATCATACCAACGTTAATACCAATTCCAGC 139144 || ||| ||| | ||| |||||||| ||| ||||||| ||||| || || Sbjct 228 GCCATTGCGAATGTGGCTACCCAGTGCACGAATGCGACCTGCGTTAATGCCAATGCCGGC 169 Query 139145 GCGTTTAGAGATATATTCAACAATTGAAGCGGAAGCCTTATTGATAGACTTCAATG-AAT 139203 |||| || | |||| |||||||| || || | || || || |||| | | Sbjct 168 ACGTTGCGATACGTATTTAACAATTGCAGACGAGGTGGCGTTAATTGA-ATCAAGGCTGT 110 Query 139204 CTCCTGCCTCAATAACAACACATGAACTAAACTGTCGAGTCGGAGTACGACAACCAGCCA 139263 | || ||| || | ||||| || |||||||| || || || |||||| ||| |||| Sbjct 109 CGCCACACTCTATTAATACACACGAGCTAAACTGGCGTGTTGGCGTACGAACACCTGCCA 50 Query 139264 TAATAGGAGTTGGTAATGAAAT 139285 |||| || || |||| |||||| Sbjct 49 TAATTGGCGTAGGTAGTGAAAT 28 >seq506238 Length=275 Score = 143 bits (158), Expect = 3e-29 Identities = 142/184 (77%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 61045 ATTACAAACTCTCGGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 61104 ||||||| | || ||||| ||||| | | ||||| |||| ||||| || || | | Sbjct 38 ATTACAATGTTTCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATG 97 Query 61105 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 61164 ||||||| || ||||| ||||| |||||||| || || | || ||||||||||| || | Sbjct 98 AGTTAAAACGCACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGT 157 Query 61165 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCAC 61224 | ||||| |||||||||| ||||||||||| | || || ||||| | |||||||||| Sbjct 158 GTTTAACAGCATCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTTGACCAC 217 Query 61225 CTTC 61228 |||| Sbjct 218 CTTC 221 >seq509673 Length=441 Score = 109 bits (120), Expect = 6e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 138878 ATTCAGCTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATT 138937 ||| | ||| || || |||||||||||||| | ||||| ||||| ||||| |||||| Sbjct 221 ATTTAACTGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTATT 280 Query 138938 TTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGC 138997 ||||| || | | |||||||| |||||||| | || ||| | || || || Sbjct 281 TTTCAGTACCAATAATGACTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCGCTGC 340 Query 138998 GCCGCCACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAA 139057 |||||||| | || || |||||||| ||||||||||||| || || |||| | || Sbjct 341 ACCGCCACGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTTATAGAA 400 Query 139058 AGGAATAACACCAGTATG 139075 || ||| ||| ||||| Sbjct 401 TGGGATACAACCCGTATG 418 >seq487923 Length=1072 Score = 107 bits (118), Expect = 2e-18 Identities = 146/202 (72%), Gaps = 9/202 (4%) Strand=Plus/Minus Query 22785 ATACTAATTTATCTAATACGTATTTTTGCCATGCATAATCATTACGGAATCCGAAGACCA 22844 ||| |||||||| |||| || || |||||||| ||||||||| |||||||| || Sbjct 528 ATAGTAATTTAT---ATACATACTTATGCCATGCTAAATCATTACCAAATCCGAATACTG 472 Query 22845 CGTCATTTGAGCGCATGTTAACAACCGCATTGATT---TTCTTGTCACGAATTAAGTATT 22901 ||||| ||||||| || |||| || |||| || || |||||||| || || Sbjct 471 CGTCACATGAGCGCTGATTGACAAT---ATAGATTAATTTATTATCACGAATAAATACTT 415 Query 22902 GTACTGTATTCGTACACATGAAATCTGACATGCCATCTTTATTGTAGTCAAACTGCATAG 22961 | || |||| ||||| || ||||||||||| ||| |||| | ||| || |||| Sbjct 414 GAACATTATTAGTACAAATAAAATCTGACATTTCATTAGTATTCCATTCACTTTGAATAG 355 Query 22962 ATGGACGAGTATAAATCATGAT 22983 | || | |||||||||||| || Sbjct 354 AAGGTCTAGTATAAATCATAAT 333 >seq351952 Length=416 Score = 100 bits (110), Expect = 3e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 61059 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 61118 ||||||||||| | ||| || || ||| ||||| | ||| | |||||||| || ||| Sbjct 34 GTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGAGTTAAATCGTACT 93 Query 61119 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 61178 || ||||| |||||||| || || | || ||||| || || |||| | | |||||| Sbjct 94 GCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATTTTCCATTGCATCC 153 Query 61179 TCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACCTTCAAT 61231 | ||||||| || || || ||||| | |||||||||||||||||| Sbjct 154 AATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACCTTCAAT 206 >seq511551 Length=634 Score = 95.1 bits (104), Expect = 1e-14 Identities = 192/278 (69%), Gaps = 18/278 (6%) Strand=Plus/Minus Query 41419 CGAGGAAGATTCAGTGTTACAACACCAAGATTATTACGTCCATCAAGAATTTCATTACCA 41478 ||||| || || | |||| ||||| | || ||||||||||||| | ||| |||||| Sbjct 492 CGAGGTAGGTTTAAGCTTACCACACCTAAGTTGTTACGTCCATCAAACACTTCCTTACCA 433 Query 41479 GTCGAATCTTTCCATACGCTCAA--GAAACTACGGCAACCCAT---TGGAGAAACAGGAA 41533 | || ||||| |||| ||| | ||| || | ||| ||||| || || | | Sbjct 432 GAAGAGTCTTT--ATACTCTCCAAGGAAGCTCCTGCAGCCCATGCTTGCCTTAAAACCAC 375 Query 41534 CAGATGAACCAGTGATAGCTTTATTATTCTTAGCTGAAATAATATCAGGATACATCCTTT 41593 ||| |||| | | ||| || ||| ||| |||||||||| ||||| | | Sbjct 374 CAGT--AACCTCTACAATCTTA-----TCGTAGTTGA--TAATATCAGGGTACATACGCT 324 Query 41594 TGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTTCGGATCGTCTT-TATAAAGA 41652 | || |||||||||||||| | ||| ||||||| |||||| || || || | | ||||| Sbjct 323 TACTGGCACACTCTAGAGCTAACTGTTTAATATTATAGTTTGGGTCTTCCTGTTTAAAG- 265 Query 41653 TTAACACCTTCTTCAACGAACATAACAAGCTTAGGGAA 41690 || ||||| |||| || | | |||||||||||| Sbjct 264 TTGACACCGTCTTTAATAGTTAGGATAAGCTTAGGGAA 227 >seq326422 Length=2068 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/114 (79%), Gaps = 4/114 (4%) Strand=Plus/Plus Query 68797 CGCTCTACCAAACTGAGCTACAC--GGAGTAGATTAAATTGGAGCGGATAATGAGAATCG 68854 ||||||||||| |||||||| | | | | |||| |||||||| | | |||||| Sbjct 292 CGCTCTACCAA-CTGAGCTATATCAGCATCACCATAAACTGGAGCGGGCAGCGGGAATCG 350 Query 68855 AACTCACATCATCAGATTGGAAGTCTGAGGTAATA-CCATTATACGATATCCGC 68907 ||| | ||||||||| ||||||| ||||||||||| |||||||||||| |||| Sbjct 351 AACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 533257986680400