Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq496362 170 2e-37
seq151038 102 6e-17
seq151037 102 6e-17
seq107225 87.8 1e-12
seq111975 86.0 5e-12
>seq496362
Length=882
Score = 170 bits (188), Expect = 2e-37
Identities = 460/687 (67%), Gaps = 30/687 (4%)
Strand=Plus/Plus
Query 43851 TTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTG 43910
|||| || ||||| || || ||||| || || ||||||||| | | | ||||
Sbjct 206 TTTTAGCATTTTTCGCCGCTTCAGACGGAATTGTAAATGAAAATCTTGCTGAAAACTTTG 265
Query 43911 CGCAAGAAGTTCAATTACCAGAAGCACGATGTTTT-TATGGGTTTCAAATTGCCATAGAA 43969
| ||||| |||| | ||||| || ||| ||||| || ||||| || |||
Sbjct 266 TAAATGAAGTGCAATATGCTGAAGCGAAATTCTTTCTATGGTTTCCAAATCATGATGGAA 325
Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGG-GCACGA 44028
|||||||| |||| ||| | | || || || || | ||||| | ||| ||
Sbjct 326 AATATTCACAGCGAAACGTATTCCTTGTTAATCGACACTTATGTAAAAGACGAAGCA-GA 384
Query 44029 GAA-GCATCGATTGTTT-AATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGAC 44086
||| || ||||| || || || ||||| | ||||| || ||| | ||||| |||
Sbjct 385 GAAAGC--CGATTTATTCAACGCATTAGAAGTTTTTCCTGCTATCAAAAAGAAAGCGGAC 442
Query 44087 TGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCA 44146
||||| || ||||||| ||||| |||||||| | ||| ||| | | || ||||||
Sbjct 443 TGGGCAATTCAATGGATTGATTCA---GATTCTTTCGCAGAGCGATTGATTGCTTTTGCA 499
Query 44147 GTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGA 44206
| |||||||| |||||||| ||||| | ||| |||| || ||||| || ||||||
Sbjct 500 GCAGTGGAAGGAATTTTCTTCTCAGGTGCTTTTTGTTCCATTTTCTGGTTGAAAAAACGA 559
Query 44207 GGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACAT 44266
||||||||||| || ||||| || ||||| || || || |||||| ||||| | ||
Sbjct 560 GGTTTGATGCCAGGATTGACATTCTCAAACGAATTGATTTCTCGTGACGAAGGTGTTCAC 619
Query 44267 TGCGATTTTGC-TTGC-TTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGA 44324
|| ||||| || ||| || || || || || | |||| || ||||
Sbjct 620 TGTGATTTCGCAGTGCATTTGCACCAACATCACTTGGTAA--ATAAAGTGCCA--AAAGA 675
Query 44325 C--AATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGC 44382
| ||| | | ||| || | || || |||| || ||| ||||||||| ||| | |
Sbjct 676 CAGAATCAGAACCATTATTATTGACGCCTTAAACATCGAAAGAGAATTTATTACAGAATC 735
Query 44383 ATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACAT 44442
| | ||||||| |||||| || ||||||| ||| |||| |||||| | || | |
Sbjct 736 ACTTCCTGTAAGTTTAATTGGTATGAATGCGAATTTAATGACGCAATATTTAGAGTTTGT 795
Query 44443 TGCAGATCGTTTACTTT---TGGAACTGGGTTGCGA---TAAACACTATATTGTACAAAA 44496
| ||| | ||||| | ||||| |||||||| | || || | | | |||
Sbjct 796 AACCGATAG---ACTTTTAGTAGAACTAGGTTGCGAACGTGAATACAACA---CGCCAAA 849
Query 44497 CCCGTTTGATTTTATGGAAAATATTTC 44523
||| || || |||||||| | |||||
Sbjct 850 CCCATTCGACTTTATGGACATGATTTC 876
>seq151038
Length=558
Score = 102 bits (112), Expect = 6e-17
Identities = 98/126 (78%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 77311 CCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGAC 77370
|||||| |||||||| || || ||| ||||||| ||| |||||| || ||||||
Sbjct 310 CCAGACCACCTCCAGTTCTGCGTTCAGTCGGTCCAGAATCACAAAGTCGTCTTTGTTGGT 251
Query 77371 AACTGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAGT 77430
| | ||||| | |||||||||||||||| ||||||||||||| |||||||| ||
Sbjct 250 GATTTTTCCTCCAGATTTCAGCCTCCAGCCGTTCAGCTTCCAGTTCTTCACCCACTTGGT 191
Query 77431 CACACC 77436
||||||
Sbjct 190 CACACC 185
>seq151037
Length=1072
Score = 102 bits (112), Expect = 6e-17
Identities = 98/126 (78%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 77311 CCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGAC 77370
|||||| |||||||| || || ||| ||||||| ||| |||||| || ||||||
Sbjct 326 CCAGACCACCTCCAGTTCTGCGTTCAGTCGGTCCAGAATCACAAAGTCGTCTTTGTTGGT 267
Query 77371 AACTGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAGT 77430
| | ||||| | |||||||||||||||| ||||||||||||| |||||||| ||
Sbjct 266 GATTTTTCCTCCAGATTTCAGCCTCCAGCCGTTCAGCTTCCAGTTCTTCACCCACTTGGT 207
Query 77431 CACACC 77436
||||||
Sbjct 206 CACACC 201
>seq107225
Length=3689
Score = 87.8 bits (96), Expect = 1e-12
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 77869 GACAAACGCCCAGGCATCTTGCTCTGTTGCAAACTTCTTAAATACGGCTGCTGGGAATTT 77928
||| |||||||| || ||| |||| | ||| |||||||| || ||| |||||||| ||
Sbjct 3038 GACGAACGCCCACGCGTCTCGCTCCGCTGCGAACTTCTTGAAAGAGGCCGCTGGGAACTT 2979
Query 77929 GTCTACTTGGCTCTTACATTCATCCC 77954
||| ||||| ||||||||||||||||
Sbjct 2978 GTCCACTTGACTCTTACATTCATCCC 2953
>seq111975
Length=1948
Score = 86.0 bits (94), Expect = 5e-12
Identities = 92/120 (77%), Gaps = 4/120 (3%)
Strand=Plus/Minus
Query 87328 CCTGCTCCCAGTTTACTAAAATCTTTCTTAGATTGAAATGTATAGACTGTCAAGCCAGCA 87387
|| ||||||| ||| || || ||| |||| || || || || |||||||||| ||| ||
Sbjct 1613 CCAGCTCCCAATTTGCTGAAGTCTCTCTTGGACTGGAAGGTGTAGACTGTCAGTCCAACA 1554
Query 87388 AACACAGCACATGTTaa--aaaaaGCGATTGTAGTATGGTGGAGTATTCATAGAAGGTCA 87445
|||||||| || || | | ||||| ||| || | |||||||| |||||||||||||
Sbjct 1553 AACACAGCGCAGGTCAGGCACAAAGC--TTGCAGCACAGTGGAGTACTCATAGAAGGTCA 1496
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 394910470939510
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |