Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq496362 170 2e-37 seq151038 102 6e-17 seq151037 102 6e-17 seq107225 87.8 1e-12 seq111975 86.0 5e-12 >seq496362 Length=882 Score = 170 bits (188), Expect = 2e-37 Identities = 460/687 (67%), Gaps = 30/687 (4%) Strand=Plus/Plus Query 43851 TTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTG 43910 |||| || ||||| || || ||||| || || ||||||||| | | | |||| Sbjct 206 TTTTAGCATTTTTCGCCGCTTCAGACGGAATTGTAAATGAAAATCTTGCTGAAAACTTTG 265 Query 43911 CGCAAGAAGTTCAATTACCAGAAGCACGATGTTTT-TATGGGTTTCAAATTGCCATAGAA 43969 | ||||| |||| | ||||| || ||| ||||| || ||||| || ||| Sbjct 266 TAAATGAAGTGCAATATGCTGAAGCGAAATTCTTTCTATGGTTTCCAAATCATGATGGAA 325 Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGG-GCACGA 44028 |||||||| |||| ||| | | || || || || | ||||| | ||| || Sbjct 326 AATATTCACAGCGAAACGTATTCCTTGTTAATCGACACTTATGTAAAAGACGAAGCA-GA 384 Query 44029 GAA-GCATCGATTGTTT-AATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGAC 44086 ||| || ||||| || || || ||||| | ||||| || ||| | ||||| ||| Sbjct 385 GAAAGC--CGATTTATTCAACGCATTAGAAGTTTTTCCTGCTATCAAAAAGAAAGCGGAC 442 Query 44087 TGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCA 44146 ||||| || ||||||| ||||| |||||||| | ||| ||| | | || |||||| Sbjct 443 TGGGCAATTCAATGGATTGATTCA---GATTCTTTCGCAGAGCGATTGATTGCTTTTGCA 499 Query 44147 GTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGA 44206 | |||||||| |||||||| ||||| | ||| |||| || ||||| || |||||| Sbjct 500 GCAGTGGAAGGAATTTTCTTCTCAGGTGCTTTTTGTTCCATTTTCTGGTTGAAAAAACGA 559 Query 44207 GGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACAT 44266 ||||||||||| || ||||| || ||||| || || || |||||| ||||| | || Sbjct 560 GGTTTGATGCCAGGATTGACATTCTCAAACGAATTGATTTCTCGTGACGAAGGTGTTCAC 619 Query 44267 TGCGATTTTGC-TTGC-TTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGA 44324 || ||||| || ||| || || || || || | |||| || |||| Sbjct 620 TGTGATTTCGCAGTGCATTTGCACCAACATCACTTGGTAA--ATAAAGTGCCA--AAAGA 675 Query 44325 C--AATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGC 44382 | ||| | | ||| || | || || |||| || ||| ||||||||| ||| | | Sbjct 676 CAGAATCAGAACCATTATTATTGACGCCTTAAACATCGAAAGAGAATTTATTACAGAATC 735 Query 44383 ATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACAT 44442 | | ||||||| |||||| || ||||||| ||| |||| |||||| | || | | Sbjct 736 ACTTCCTGTAAGTTTAATTGGTATGAATGCGAATTTAATGACGCAATATTTAGAGTTTGT 795 Query 44443 TGCAGATCGTTTACTTT---TGGAACTGGGTTGCGA---TAAACACTATATTGTACAAAA 44496 | ||| | ||||| | ||||| |||||||| | || || | | | ||| Sbjct 796 AACCGATAG---ACTTTTAGTAGAACTAGGTTGCGAACGTGAATACAACA---CGCCAAA 849 Query 44497 CCCGTTTGATTTTATGGAAAATATTTC 44523 ||| || || |||||||| | ||||| Sbjct 850 CCCATTCGACTTTATGGACATGATTTC 876 >seq151038 Length=558 Score = 102 bits (112), Expect = 6e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 77311 CCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGAC 77370 |||||| |||||||| || || ||| ||||||| ||| |||||| || |||||| Sbjct 310 CCAGACCACCTCCAGTTCTGCGTTCAGTCGGTCCAGAATCACAAAGTCGTCTTTGTTGGT 251 Query 77371 AACTGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAGT 77430 | | ||||| | |||||||||||||||| ||||||||||||| |||||||| || Sbjct 250 GATTTTTCCTCCAGATTTCAGCCTCCAGCCGTTCAGCTTCCAGTTCTTCACCCACTTGGT 191 Query 77431 CACACC 77436 |||||| Sbjct 190 CACACC 185 >seq151037 Length=1072 Score = 102 bits (112), Expect = 6e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 77311 CCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGAC 77370 |||||| |||||||| || || ||| ||||||| ||| |||||| || |||||| Sbjct 326 CCAGACCACCTCCAGTTCTGCGTTCAGTCGGTCCAGAATCACAAAGTCGTCTTTGTTGGT 267 Query 77371 AACTGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAGT 77430 | | ||||| | |||||||||||||||| ||||||||||||| |||||||| || Sbjct 266 GATTTTTCCTCCAGATTTCAGCCTCCAGCCGTTCAGCTTCCAGTTCTTCACCCACTTGGT 207 Query 77431 CACACC 77436 |||||| Sbjct 206 CACACC 201 >seq107225 Length=3689 Score = 87.8 bits (96), Expect = 1e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 77869 GACAAACGCCCAGGCATCTTGCTCTGTTGCAAACTTCTTAAATACGGCTGCTGGGAATTT 77928 ||| |||||||| || ||| |||| | ||| |||||||| || ||| |||||||| || Sbjct 3038 GACGAACGCCCACGCGTCTCGCTCCGCTGCGAACTTCTTGAAAGAGGCCGCTGGGAACTT 2979 Query 77929 GTCTACTTGGCTCTTACATTCATCCC 77954 ||| ||||| |||||||||||||||| Sbjct 2978 GTCCACTTGACTCTTACATTCATCCC 2953 >seq111975 Length=1948 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/120 (77%), Gaps = 4/120 (3%) Strand=Plus/Minus Query 87328 CCTGCTCCCAGTTTACTAAAATCTTTCTTAGATTGAAATGTATAGACTGTCAAGCCAGCA 87387 || ||||||| ||| || || ||| |||| || || || || |||||||||| ||| || Sbjct 1613 CCAGCTCCCAATTTGCTGAAGTCTCTCTTGGACTGGAAGGTGTAGACTGTCAGTCCAACA 1554 Query 87388 AACACAGCACATGTTaa--aaaaaGCGATTGTAGTATGGTGGAGTATTCATAGAAGGTCA 87445 |||||||| || || | | ||||| ||| || | |||||||| ||||||||||||| Sbjct 1553 AACACAGCGCAGGTCAGGCACAAAGC--TTGCAGCACAGTGGAGTACTCATAGAAGGTCA 1496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394910470939510