Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq44246 109 5e-19
seq152719 107 2e-18
seq152718 86.0 5e-12
>seq44246
Length=4029
Score = 109 bits (120), Expect = 5e-19
Identities = 260/390 (67%), Gaps = 5/390 (1%)
Strand=Plus/Minus
Query 131609 TCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCC 131668
|||||||||||||| || ||||| | ||| || || | |||||| |||| ||
Sbjct 914 TCGCTGGGACACATCAGAGACCAGTCCTGGTTGCTCTCCACCCTCTTCATGAACAGGTCG 855
Query 131669 GGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAttttt 131728
|| | ||| || |||| || |||||||| ||| | | ||| || | ||| | | ||
Sbjct 854 GGGATCCACAAGCCGTAGAAGAGATCTCTGGCTCTCTGCTCCTCCTTCCCCGTGTTCTTC 795
Query 131729 ttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCG 131788
|||| | | ||||| || | ||| ||||| || |||| |||| || | |||
Sbjct 794 TTCAGCTCCAGGAAGTCGAACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCG 735
Query 131789 CCTTTGCGC---TTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAAC 131845
|| ||| || ||||| || | |||| || | |||||||||| || | || |
Sbjct 734 CCGGGTCGCTTGTTGCCGCCCTGGTCGACATAGCGTGCTGTGTTGTTGTAGACCCTCAGC 675
Query 131846 ATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTG 131905
||||| ||| ||||||| ||| || ||||||| |||||||| || ||| || |
Sbjct 674 ATGGGGACCAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCGGTGGATCGG 615
Query 131906 ATTTTGTGAACGTTGAGTCCAATACCTCC-GCCGTATTTAGAGATTAGTGCGCATTTGGT 131964
|| | ||| | || || ||||| |||| | || ||||| ||||| || | |
Sbjct 614 ATGCAGCTGACGGCCACACCGATTCCTCCTGCCG-ACTTGGAGATGAGTGCACACTGCTT 556
Query 131965 TAGAGTGTTATAGATACCTTCCACGCTGTC 131994
|| |||| ||||| || || | ||||||
Sbjct 555 CAGCGTGTCGTAGATGCCCTCGATGCTGTC 526
>seq152719
Length=2073
Score = 107 bits (118), Expect = 2e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || ||||| || || ||||||||| | |||| ||||||| ||||| || |||
Sbjct 74 GTGGACTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCG 133
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
|| | || || | ||| ||||| || || | ||||| ||||| |||||| |||
Sbjct 134 GCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCCTCCTTATCCTGGATCTTAGCTTTG 193
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || | ||||| ||| |||||| || ||||| || || || || ||||| ||
Sbjct 194 ACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATGGACTTACCAGTCAGGGTC 253
Query 27231 TTCACAAAGATTTGCATAGCTGCT 27254
||||||||||| |||||| || ||
Sbjct 254 TTCACAAAGATCTGCATACCTCCT 277
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
||||| | ||| |||| || | ||| | || || ||||| || || || || || |
Sbjct 500 CCTCCTCTCAAGCGCAGCACAAGATGGATGGTGGATTCTTTCTGGATGTTATAATCTGAC 559
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
||| |||| | ||||| ||||| || ||||| | || || | ||| ||||| || ||
Sbjct 560 ATGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGG 619
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| ||||| ||||| |||||| ||| | | || | ||||| ||| ||||||
Sbjct 620 ATGCCCTCCTTATCCTGGATCTTAGCTTTTACATTCTCAATGGTGTCGCTGGGTTCAACC 679
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| ||||| |||| || || ||||| || ||||||||||| |||||
Sbjct 680 TCCAGAGTGATAGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 726
Score = 105 bits (116), Expect = 6e-18
Identities = 166/235 (71%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAG-AGTCTTTTTGAATATTGTAGTCGCT 27079
||||| | || |||||| |||| ||| || | || | ||||| || || |||||||||
Sbjct 272 CCTCCTCTCAGCCGCAAGACCAGATG-AATGCAGGACTCTTTCTGGATGTTGTAGTCGGA 330
Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139
| |||| ||||||| ||||| || ||||| | ||||| | ||| || || || ||
Sbjct 331 GAGAGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGAGG 390
Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199
| || || ||||| |||||| ||| | | || | ||||| ||| ||||||
Sbjct 391 GATGCCTTCCTTATCCTGGATCTTAGCTTTGACATTCTCAATGGTGTCGTTGGGTTCAAC 450
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254
| ||||| |||| ||||| || || || ||||||||||| || ||| || ||
Sbjct 451 CACCAGAGTGATAGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGAATACCTCCT 505
>seq152718
Length=3078
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
||||| | || |||||| |||| ||| | ||||| ||||| || || |||| |||
Sbjct 2375 CCTCCTCTCAGCCGCAAGACCAGATGGAGGGTAGACTCTTTCTGGATGCTGTATTCGGAG 2434
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| |||| |||||| ||| | || ||| | | |||| | ||| || || | ||
Sbjct 2435 AGAGTGCGGCTGTCTTCCAGCAGCTTGCCGCCAAAGTTGAGCCTCTGCTGGTCTGTAGGG 2494
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| || || ||||| ||||||| ||| | | || | ||||| ||| ||||||
Sbjct 2495 AATCCTTCCTTATCTTGGATCTTGGCTTTGAAATTATCAATGGTGTCACTGGGTTCAACC 2554
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| |||| ||||| || || || || || ||||||||||| || ||
Sbjct 2555 TCCAGAGCTATAGTCTTCCCTGTGAGGGTCTTCACAAAGATCTGAAT 2601
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422212883998224
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |