Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_027983.1 Length=167435 Score E Sequences producing significant alignments: (Bits) Value seq449735 176 5e-39 seq506238 138 1e-27 seq487923 107 2e-18 seq351952 100 3e-16 seq509673 96.9 4e-15 seq510909 86.0 7e-12 seq326422 86.0 7e-12 >seq449735 Length=3187 Score = 176 bits (194), Expect = 5e-39 Identities = 490/741 (66%), Gaps = 23/741 (3%) Strand=Plus/Minus Query 139575 TTTGTTGGAATAGCAATTTCACAGCACAAGTTACTCTGACGAATAGGTGCCTTTTCACGA 139634 || ||||| | |||||||| | || || ||| || |||||||||||| || | | Sbjct 755 TTAGTTGGTAATGCAATTTCTAAACATAAATTAGATTGGCGAATAGGTGCCACTTTAGCA 696 Query 139635 ATAAACGGAGTATAGTTATTCGTATTATCAATGAACTGTACATAAATCCTTGCTGTTCCT 139694 || ||||| | | |||| | |||| | |||| ||||| | | || | | Sbjct 695 ATGAACGGGCTGTGCGTATTACAGTGGTCAACGTTTTGTAAGTAAATACGACCGGTACTT 636 Query 139695 GAACGTTCAGTCATGAGCAA---TTCA-AATAGTTCACGGGCTTTAATACGCTTTTTACG 139750 | |||||| || |||| || | || |||||| |||||||| || |||||||| Sbjct 635 GCACGTTCT----TGCGCAAACATTGAGAACAGTTCAATAGCTTTAATGCGTTTTTTACG 580 Query 139751 AAT--ATTAGGGTCTTTTTCTGCTGCTTCATATAATTCACGG-AAACG-GTCTTGGTCTT 139806 ||| ||| | |||| ||| | || | |||| | || |||| ||||||||||| Sbjct 579 AATTGATTCG--TCTTGTTCGTAT--TTTACATAAAGCGCGTCAAACTCGTCTTGGTCTT 524 Query 139807 TAAAATAAGAATAATAAAGCTCGCCACCCATTTCATGCGGACTGAACAAAGTAATGTAAT 139866 |||| | | || ||||| ||| || ||| || || ||||| |||||||| | Sbjct 523 CAAAAAATGCATCGTAAAG---GCCTGGCACATCAGAGGGGCTAAACAAGGTAATGTAGT 467 Query 139867 CGTTCTTTCCGAATCGTTCCATCATCAAATCATTCAGTTGAACACCATAATCCATATGAC 139926 ||| || || || ||| | | ||| | || || || ||||| | ||||| Sbjct 466 CGTCTTTAATTAAACGCGAGTACATTAGTTTATTAAACTGTACGCCGTAATCTAAATGAC 407 Query 139927 GAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCA 139986 | | |||||| || || || || ||||||||| | || | || ||||| ||||| | Sbjct 406 GCACGCGGTTGTCATCAACCCCGCGGTTATTTTTAAGTACTAACAGGTTTTCTACTTCTA 347 Query 139987 AATGCCAAATAGGATA--ATAAGCAGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACA 140044 ||||||||| || || | ||| || || ||||||||||| | || || || ||||| Sbjct 346 AATGCCAAAGCGGGTAGAACAAG--GTTGCTGCGCCGCCACGTACACCGCCTTGCGAACA 289 Query 140045 TGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAATAACACCAGTATGGCGTACTTC 140104 |||||| || || ||||| || || ||||||||||| ||| |||||| |||| Sbjct 288 GCTTTTAACCGCTGTTTGAAAGTGCTTATAAAAAGGAATACAACCCGTATGGTACGCTTC 229 Query 140105 ACCCATGCCAATCTTAGAACCTTCGGCACGAATCATACCAACGTTAATACCAATTCCAGC 140164 || ||| ||| | ||| |||||||| ||| ||||||| ||||| || || Sbjct 228 GCCATTGCGAATGTGGCTACCCAGTGCACGAATGCGACCTGCGTTAATGCCAATGCCGGC 169 Query 140165 GCGTTTAGAGATATATTCTACAATCGAAGCGGAAGCCTTATTGATAGACTTTAATGAATC 140224 |||| || | |||| ||||| | || || | || || || | | || Sbjct 168 ACGTTGCGATACGTATTTAACAATTGCAGACGAGGTGGCGTTAATTGAATCAAGGCTGTC 109 Query 140225 ACCTGCCTCAATAACAACACATGAACTAAACTGTCGAGTCGGAGTACGGCAACCAGCCAT 140284 || ||| || | ||||| || |||||||| || || || ||||| ||| ||||| Sbjct 108 GCCACACTCTATTAATACACACGAGCTAAACTGGCGTGTTGGCGTACGAACACCTGCCAT 49 Query 140285 AATAGGAGTTGGCAATGAAAT 140305 ||| || || || | |||||| Sbjct 48 AATTGGCGTAGGTAGTGAAAT 28 >seq506238 Length=275 Score = 138 bits (152), Expect = 1e-27 Identities = 141/184 (77%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 60765 ATTACAAACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 60824 ||||||| | || ||||| ||||| | | ||||| |||| ||||| || || | | Sbjct 38 ATTACAATGTTTCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATG 97 Query 60825 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 60884 ||||||| || ||||| ||||| |||||||| || || | || ||||||||||| || | Sbjct 98 AGTTAAAACGCACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGT 157 Query 60885 GCTTAACTGCATCTTCCAGAGTTTCGCGACGCAGAACGTTAACGTTCAGGTGTTGACCAC 60944 | ||||| |||||||||| ||||| ||||| | || || ||||| | |||||||||| Sbjct 158 GTTTAACAGCATCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTTGACCAC 217 Query 60945 CTTC 60948 |||| Sbjct 218 CTTC 221 >seq487923 Length=1072 Score = 107 bits (118), Expect = 2e-18 Identities = 150/202 (74%), Gaps = 9/202 (4%) Strand=Plus/Minus Query 23362 ATACTAATTTATCTAATACGTATTTTTGCCATGCATAATCATTACGGAATCCGAAGACCA 23421 ||| |||||||| |||| || || |||||||| ||||||||| |||||||| || Sbjct 528 ATAGTAATTTAT---ATACATACTTATGCCATGCTAAATCATTACCAAATCCGAATACTG 472 Query 23422 CGTCATTTGAGCGCATGCTT-ACTAC-TGCATTGACTTTCTTATCACGAATCAGGTACT- 23478 ||||| ||||||| || || || | | ||| | ||| ||||||||||| | |||| Sbjct 471 CGTCACATGAGCGC-TGATTGACAATATAGATTAA-TTTATTATCACGAATAAA-TACTT 415 Query 23479 GTACTGTATTAGTACACATGAAATCTGACATGCCATCTTTATTGTAGTCAAATTGCATGG 23538 | || |||||||||| || ||||||||||| ||| |||| | ||| ||| || | Sbjct 414 GAACATTATTAGTACAAATAAAATCTGACATTTCATTAGTATTCCATTCACTTTGAATAG 355 Query 23539 ATGGACGAGTATAAATCATGAT 23560 | || | |||||||||||| || Sbjct 354 AAGGTCTAGTATAAATCATAAT 333 >seq351952 Length=416 Score = 100 bits (110), Expect = 3e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 60779 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 60838 ||||||||||| | ||| || || ||| ||||| | ||| | |||||||| || ||| Sbjct 34 GTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGAGTTAAATCGTACT 93 Query 60839 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 60898 || ||||| |||||||| || || | || ||||| || || |||| | | |||||| Sbjct 94 GCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATTTTCCATTGCATCC 153 Query 60899 TCCAGAGTTTCGCGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 60951 | |||| || || || |||||||| | |||||||||||||||||| Sbjct 154 AATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACCTTCAAT 206 >seq509673 Length=441 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 139905 TGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAAA 139964 || || || |||||||||||||| | ||||| ||||| ||||| ||||||||||| Sbjct 228 TGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTATTTTTCAGT 287 Query 139965 ACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 140024 || | | |||||||| |||||||| | || ||| | || || || |||||| Sbjct 288 ACCAATAATGACTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCGCTGCACCGCCA 347 Query 140025 CGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAATA 140084 || | || || ||||| || ||||||| ||||| || || |||| | || || ||| Sbjct 348 CGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTTATAGAATGGGATA 407 Query 140085 ACACCAGTATG 140095 ||| ||||| Sbjct 408 CAACCCGTATG 418 >seq510909 Length=431 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 60767 TACAAACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAG 60826 |||| ||| | |||||| ||||||| || ||||| ||||||| || ||||| || | Sbjct 339 TACATACTTTTAGTAAATGTACGAGTAATCACGTCTTGCTGCTGCTCAGGAGTGAGCGCA 398 Query 60827 TTAAAGCGAACTGCATAACCGGATACACGGAT 60858 ||||||||||| |||||||| |||||||| || Sbjct 399 TTAAAGCGAACGGCATAACCCGATACACGAAT 430 >seq326422 Length=2068 Score = 86.0 bits (94), Expect = 7e-12 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 69678 CATAAATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTA 69737 |||||| |||||||| | | ||||||||| | ||||||||| ||||||| |||||||| Sbjct 323 CATAAACTGGAGCGGGCAGCGGGAATCGAACCCGCATCATCAGCTTGGAAGGCTGAGGTA 382 Query 69738 ATA-CCATTATACGATATCCGC 69758 ||| |||||||||||| |||| Sbjct 383 ATAGCCATTATACGATGCCCGC 404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532145343708400