Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_027995.1 Length=41666 Score E Sequences producing significant alignments: (Bits) Value seq523693 87.8 5e-13 seq311730 84.2 6e-12 >seq523693 Length=695 Score = 87.8 bits (96), Expect = 5e-13 Identities = 177/258 (69%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 41172 AACAAAGTAGAAATCATTGGCAACTTAGGCAACGATCCAGAAATCCGTTACATGCCAAGC 41231 |||||||| | | | ||||| |||||| | ||||| ||| | ||||| ||||||| Sbjct 83 AACAAAGTCATATTAGTCGGCAATTTAGGCCAAGATCCCGAAGTGCGTTATATGCCAAAT 142 Query 41232 GGCGGCGCGGTTGCTAATCTAAGCATCGCCACAACTGAAAGCTGGAAGGATAAAACCACC 41291 ||| || || || ||| | | | | || || | ||| ||||| || || || Sbjct 143 GGCAATGCCGTGGCCAATATTACCCTTGCTACCAGCGAATCTTGGAAAGACCAA--CAGG 200 Query 41292 GGCGAGAAGAAAGAACAAACGGAATGGCACCGCGTTGTCATCTTCGGTAAGCTGGCAGAA 41351 | | | || || |||| || || ||||||||||| || || ||||| ||| | || ||| Sbjct 201 GTCAACAACAA-GAACGTACCGAGTGGCACCGCGTGGTGATGTTCGGCAAGTTAGCTGAA 259 Query 41352 ATTGCTAGCGAATACCTGCGCAAAGG-TAGCAAGGTGTTCATTGAAGGCAGCCTGCGAAC 41410 || | || |||||||| ||||| | |||| || | | ||||||| | ||| || Sbjct 260 ATCACGGCTGAGTACCTGCGTAAAGGTTCGCAA-GTTTACCTTGAAGGTAAATTGCAGAC 318 Query 41411 GCGTAAATGGCAGGACCA 41428 ||||| ||| | ||||| Sbjct 319 ACGTAAGTGGAAAGACCA 336 >seq311730 Length=9896 Score = 84.2 bits (92), Expect = 6e-12 Identities = 169/251 (67%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 41170 TGAACAAAGTAGAAATCATTGGCAACTTAGGCAACGATCCAGAAATCCGTTACATGCCAA 41229 ||||||||||| | |||| || ||||| | ||||| ||| | ||||| ||||| | Sbjct 3003 TGAACAAAGTAATTTTGGTTGGTAATTTAGGACAAGATCCTGAAGTACGTTATATGCCTA 2944 Query 41230 GCGGCGGCGCGGTTGCTAATCTAAGCATCGCCACAACTGAAAGCTGGAAGGATAAAACCA 41289 |||| || || || ||| | | | | || || | || |||| || || |||| || Sbjct 2943 ACGGCAACGGTGTAGCAAATATCACCTTAGCAACTTCAGATAGCTACAAAGACAAAAACA 2884 Query 41290 CCGGCGAGAAGAAAGAACAAACGGAATGGCACCGCGTTGTCATCTTCGGTAAGCTGGCAG 41349 | ||| | | | || |||| || |||||||| || || | || || ||| | |||| Sbjct 2883 CTGGCCAAATGGTTGATAAAACTGAGTGGCACCGTGTGGTATTTTTTGGCAAGTTAGCAG 2824 Query 41350 AAATTGCTAGCGAATACCTGCGCAAAGGTAGCAAGGTGTTCATTGAAGGCAGCCTGCGAA 41409 |||||| | | ||||| || |||||| | | | ||||||| | || | || Sbjct 2823 AAATTGTTGGTGAATATTGCCGTAAAGGTTCACAAATTTATGTTGAAGGTAAACTTCAAA 2764 Query 41410 CGCGTAAATGG 41420 | ||||||||| Sbjct 2763 CACGTAAATGG 2753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132378327304272