Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq44246 185 1e-41 seq504380 102 1e-16 seq103378 91.5 2e-13 >seq44246 Length=4029 Score = 185 bits (204), Expect = 1e-41 Identities = 656/1007 (65%), Gaps = 26/1007 (3%) Strand=Plus/Minus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 |||||| |||| | ||| || || ||| | | ||||| |||| || || |||||| Sbjct 1817 CTTCATCTCCTCGCCCCACAGCCCTCTCTCCGTCAGGTCCTTGAGCAGATGGGGGTTGAC 1758 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 || ||||| |||| ||| | | ||||||||| | ||||| | || | Sbjct 1757 GATCTGGAACTCTCCTGACAGGACCCGGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGAT 1698 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 | | || || || |||| ||| || ||||||||||| || ||||| || |||| || || Sbjct 1697 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAG 1638 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGA- 110852 ||||| | | || | || ||| ||||| || | | |||||| | | Sbjct 1637 GCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTC 1578 Query 110853 GCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCAC-CCCTTGG-GACGCGGGAGAACC 110910 | | || || || |||||||||| |||| || | |||||| |||| ||||| | Sbjct 1577 GGTGGGCGTCTTCT-CCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGGGAG---C 1522 Query 110911 CTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGC 110970 ||| | || || |||| || | | | |||| ||| ||||| |||||||||| || Sbjct 1521 CTCGTACGTGTCGTAGGGGCCCAGCTCGGCGGCCAGTTCGCAGCTGGCCTCCAGGGCGGC 1462 Query 110971 GTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGC 111030 || || ||||| |||||||| | |||| | || ||| || ||||| | Sbjct 1461 GTAGTAGATGGTCTCAAAGATCTGGATGTTCAGCAGCTGGGCCTCGGGGCTTTCAAAGGG 1402 Query 111031 GTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTG 111090 ||| || || || || | || || || || || || || | ||| || || ||||| Sbjct 1401 GTAACGCATCAGGATGAAGGCGTCGGCCAGGCCCTGGACGCCGATACCGATCGGCCTGTG 1342 Query 111091 TCGCATATTAGACTT-TCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGT 111149 ||| | || |||| ||| | || |||| || || || | || |||| || Sbjct 1341 GCGCTTGTTGGACTGATCGGCCTCGGGCACCGGG-TAGAAGTTAATCTCTATGATCTTGT 1283 Query 111150 TTAGATTTTTGGTAACAATCTTTGTGATTTCA---TGAAGTTTTTCATAATCAAAAGTGC 111206 | || || || || ||| | || | || | ||||| | | |||||||| | Sbjct 1282 TCAGGTTCTTC---ACGATCACTTTGGTCACAGACTCCAGTTTCTTGAAGTCAAAAGTCC 1226 Query 111207 GAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCT 111266 | ||| |||| ||| | || ||||| || |||| ||| || ||||| || Sbjct 1225 G---CTCGGGGGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTACACACAGCGACCT 1169 Query 111267 CATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCA 111326 |||| | | ||| || | ||||| || || | |||| | ||| || || |||| Sbjct 1168 CATCGCCACTGGAGTATTCAACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTTCCCA 1109 Query 111327 AATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCG 111386 |||| ||||| |||||| ||||||| || || ||||| |||||||| ||||| |||| Sbjct 1108 GGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTGCCCG 1049 Query 111387 TCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACAT-CGGCGGCTGGTACAATGGCGTTG 111445 ||||||||| || | || || || | ||| || | | | | || || || ||| Sbjct 1048 ACTCCGTCTGGGACTCGATGATGGCGTGCCACACCTGCTGAGCCTTCACCACACGC-TTG 990 Query 111446 GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TC 111504 |||| |||||| ||| || | |||||||| ||||||||||| ||| | || || Sbjct 989 ACCCGGCCCTCCCGCTCATATTGGGTGTAGAGCTTCTCAAACTCCTCCCCC-CAGCACTC 931 Query 111505 GGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCA--ACC 111562 | || || || || | ||||| | |||||||| | || || ||| ||| Sbjct 930 GTCCAGCCCGGGGCTCTCGCTGGGACACATCAGAGACCAGT--CCTGGTTGCTCTCCACC 873 Query 111563 CGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCT 111609 | ||||||||| ||||| || ||||||| | | ||||||||||| Sbjct 872 CTCTTCATGAACAGGTCGGGGATCCACAAGCCGTAGAAGAGATCTCT 826 >seq504380 Length=601 Score = 102 bits (112), Expect = 1e-16 Identities = 271/404 (67%), Gaps = 19/404 (5%) Strand=Plus/Plus Query 11531 TCATTG---TCAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCA 11587 |||||| ||||| |||||||| ||| | |||||| || | ||| || || | |||| Sbjct 5 TCATTGCCTTCAAAACCATCCATTTCGACCAATAATTGGTTCAGTGTCTGCTCACGCTCA 64 Query 11588 TCATTTGCTG-GCATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAAT 11646 ||||| | || | ||||| | || || || ||||||||||| |||||||| Sbjct 65 TCATTACCACCGCCCAT-ACCAGAGCCACGATGACGACCGACCGCATCAATTTCATCAAT 123 Query 11647 GAAGACAATACATGGT----TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTT 11702 |||| ||||| || | |||| || | ||| || | |||||| || | | Sbjct 124 AAAGATGATACAAGGCGCGCTCTTTTTAGCCTG----TTCGAACATATCGCGTACACGTG 179 Query 11703 TGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGG 11761 |||||| ||||| ||||||||||| ||||| | | | ||| | || || ||| || Sbjct 180 AGGCACCGACACCGACAAACATCTCAACAAAATCAGAACCTGAG-ATTGAGAAGAACGGC 238 Query 11762 ACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCC 11821 || || | |||||| || ||||||| ||| | | ||| || || |||||||| ||| Sbjct 239 ACTTTAGCTTCACCAGCAATGGCTCTGGCTAACAAGGTTTTACCGGTACCTGGAGGACCT 298 Query 11822 GCGAGAAGGGCGCCTCGGGGGATCTTGGCACCA--CTTCCAAAATATCTCTCGGGTTGCT 11879 | | | | || || || ||| | |||||| ||| |||| | || |||| || Sbjct 299 ACCATTAAGATACCACGTGGAATCGTCGCACCAAGCTTGGTAAATTTATC-AGGGTCGCG 357 Query 11880 TGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCA 11923 | | ||| || || | || | | ||| ||||||||| | ||| Sbjct 358 T-AAAAACTCGACCACTTCGACCACTTCTTCTTTGGCCTCTTCA 400 >seq103378 Length=1867 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| || |||||||| | || ||||| || | ||| || || || || Sbjct 1798 CTCATCTTTGCTGGTGTACTCCACTATCTCTGTGCACAGATTGCTGGATTTGATGGTTCC 1739 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || ||||| ||||| |||||| |||||| || ||||||||||||||||| ||||| || Sbjct 1738 CAGATTCTGCTGGTTGCTCTTCCCGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACC 1679 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 ||| || |||||||| | || || || | ||| Sbjct 1678 CGTTTCAGTCTGTGACTCGATGATGGCGTACCA 1646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 623906599099200