Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq44246 221 1e-52 seq504380 104 3e-17 seq54337 95.1 1e-14 seq231358 93.3 5e-14 seq496362 91.5 2e-13 seq478780 82.4 9e-11 >seq44246 Length=4029 Score = 221 bits (244), Expect = 1e-52 Identities = 898/1393 (64%), Gaps = 49/1393 (4%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| |||||| Sbjct 1723 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 1664 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || |||||||| || |||| || |||||||| | | || | | || ||| Sbjct 1663 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCC 1604 Query 118302 TTGAG-AGC-----GTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAAC 118355 || || ||| |||||| || | || || | |||||| |||| || || Sbjct 1603 TTCAGCAGCTTCCAGTCCCACAGGTCGGTGGGCGTCTTCTCCC------ACATGTCGTAC 1550 Query 118356 TGGAGGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCT 118413 |||||||| || | | |||| || | |||| | || || || |||||| | Sbjct 1549 TGGAGGATGCCCTTGCTGACGGGGGAG---CCTCGTACGTGTCGTAGGGGCCCAGCTCGG 1493 Query 118414 CCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCAT 118473 | |||| |||| |||| ||||| ||||| |||| || || || ||||| || | | Sbjct 1492 CGGCCAGTTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGT 1433 Query 118474 TCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGA 118533 ||| || ||||||| | ||||| | | || || || || | || || | Sbjct 1432 TCAGCAGCTGGGCCTCGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGCCA 1373 Query 118534 GACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC-- 118591 | || ||||| |||| || || || | || | | | || |||| || ||| ||| Sbjct 1372 GGCCCTGGACGCCGATACCGATCGGCCTGTGGCGCTTGTTGGACT---GATCGGCCTCGG 1316 Query 118592 -CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 118650 ||| || || || || | || || | | | || || || || || || || || | Sbjct 1315 GCACCGGGTAGAAGTTAATCTCTATGATCTTGTTCAGGTTCTTCACGATCACTTTGGTCA 1256 Query 118651 TTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGG 118710 | || || | | | |||||| | || ||| |||| ||| | || | Sbjct 1255 CAGACTCCAGTTTCTTGAAGTCAAAAGTCCG---CTCGGGGGTGACGTACATGTTGAGAG 1199 Query 118711 CGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCG 118770 |||| || |||||||||||||||| | |||||| | | ||| || | ||||||| Sbjct 1198 CGATGGAGGCCAGATTACACACAGCGACCTCATCGCCACTGGAGTATTCAACGATTTCCG 1139 Query 118771 TGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACG 118830 |||| | ||| | ||| ||||| |||| ||||| || || ||| |||| || | Sbjct 1138 TGCAGAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGG 1079 Query 118831 CATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCC 118890 | || ||||| |||||||| ||||| |||| |||||| ||||||| || || || | || Sbjct 1078 CGTCTTTGTACAGCATGTACGGCGTGCCCGACTCCGTCTGGGACTCGATGATGGCGTGCC 1019 Query 118891 AGACATCGGCAGCTGGCA-CAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAG 118949 | || | ||| || || || ||| | || ||||| ||| || | |||||| Sbjct 1018 ACACCTGCTGAGCCTTCACCACACGC-TTGACCCGGCCCTCCCGCTCATATTGGGTGTAG 960 Query 118950 AGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG-CAGAA 119008 || |||||||| || ||| | ||| ||||| || || | ||||| || | Sbjct 959 AGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCC-GGGGCTCTCGCTGGGACACAT 901 Query 119009 GAGAGACCATTGACCACCCT--CCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGC 119066 |||||||| | || | ||| |||| ||||||||| ||||| |||||||| | Sbjct 900 CAGAGACCA--GTCCTGGTTGCTCTCCACCCTCTTCATGAACAGGTCGGGGATCCACA-A 844 Query 119067 GCCG-AGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCA 119124 |||| |||||||||| | | | ||| || | ||||| || || || ||||| Sbjct 843 GCCGTAGAAGAGATCTCTGGCTCTCTGCTCCTCCTTCCCCGTG-TTCTTCTTCAGCTCCA 785 Query 119125 AAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC------CT 119178 ||||| | | || ||||||||| |||||||||| |||| | || || Sbjct 784 GGAAGTCGAACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGTCGCT 725 Query 119179 TACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAA 119238 | | | || |||||| ||||| | || ||| ||| | || | ||||| || | Sbjct 724 T--GTTG-CCGCCCTGGTCGACATAGCGTGCTGTGTTGTTGTAGACCCTCAGCATGGGGA 668 Query 119239 TGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGT 119298 | || | ||| | ||| || || || || | ||| || || | Sbjct 667 CCAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCGGTGGATCGGATGCAGC 608 Query 119299 GGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGC 119358 || | || ||| || || |||||| |||| ||||| | || |||| | | || || Sbjct 607 TGACGGCCACACCGATTCCTCCTGCCGACTTGGAGATGAGTGCACACTGCTTCAGCGTGT 548 Query 119359 CGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAG 119418 ||||||| || ||||| ||| |||| | | || ||||||||||| || | |||| Sbjct 547 CGTAGATGCCCTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGAGAGCTGAG 488 Query 119419 GCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGAC 119477 ||| | || || ||||||||||| || || | |||||| ||||| || | | || Sbjct 487 GCCGGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAAC-CACTTCTCCGAG 429 Query 119478 ATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACC 119537 | | || ||||||||| | | ||||| || || | ||| || |||| ||| ||| Sbjct 428 AGCAGGTTGTAGGTCTCGATGGCGGCGTCGATATCCGTCTTGTGGATTCCGACCGACACC 369 Query 119538 CGCATAAACATGT 119550 | ||| | ||||| Sbjct 368 CTCATGAGCATGT 356 >seq504380 Length=601 Score = 104 bits (114), Expect = 3e-17 Identities = 221/325 (68%), Gaps = 14/325 (4%) Strand=Plus/Plus Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA 14209 ||||| |||||||| || ||| | ||| || | || || || || |||||||| || Sbjct 14 TCAAAACCATCCATTTCGACCAATAATTGGTTCAGTGTCTGCTCACGCTCATCATTACCA 73 Query 14210 GG---CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACG 14266 ||||||| ||| | || |||||| || ||||||||||| || || | | Sbjct 74 CCGCCCATACCAGAGCCAC---GATGACGACCGACCGCATCAATTTCATCAATAAAGATG 130 Query 14267 ATACATGGTTGA---TTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCG 14323 ||||| || |||| | || ||| || ||||| || || | ||||||| Sbjct 131 ATACAAGGCGCGCTCTTTTTA---GCCTGTTCGAACATATCGCGTACACGTGAGGCACCG 187 Query 14324 ACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGA 14382 ||||| ||||||||||| ||||||| | | | | |||| || ||| || || |||| Sbjct 188 ACACCGACAAACATCTCAACAAAATCAGAACCTG-AGATTGAGAAGAACGGCACTTTAGC 246 Query 14383 TTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAG 14442 |||||| || ||||||| ||| | | ||| || || || ||||| ||| | | | Sbjct 247 TTCACCAGCAATGGCTCTGGCTAACAAGGTTTTACCGGTACCTGGAGGACCTACCATTAA 306 Query 14443 GGCACCACGTGGGATCCTGGCACCA 14467 | ||||||||| ||| | |||||| Sbjct 307 GATACCACGTGGAATCGTCGCACCA 331 >seq54337 Length=1748 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| ||||||| | |||||||||| |||| ||| ||||| ||||| Sbjct 1338 TAGATGTTGCTGGTGTACGGCTCAATGGACTCATTGTTGCCCAGGATCTGGGCAGTGGAA 1279 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 |||||||||||||| |||| || || ||||| Sbjct 1278 GCTGTGGGCATGGGGGCCAACAGCAGACTGTT 1247 >seq231358 Length=2322 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||| ||||| |||||| ||| || ||||| || || | ||||| Sbjct 628 CCTCGTCTCTGCTGATGAGCTCATTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 687 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||| || ||| || || |||||||||||||| |||||||| Sbjct 688 TCAGCCAGAAGATGGCAGCGAAGGACCCAGAGAAGAAGATTCCCTCCAC 736 >seq496362 Length=882 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/202 (70%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| | ||| |||||||| || || | ||| || ||||| || |||||||| | ||| Sbjct 619 GTGAACACCTTCGTCACGAGAAATCAATTCGTTTGAGAATGTCAATCCTGGCATCAAACC 560 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 || || |||||||||||||| | |||||| | || |||||||| || || ||||| Sbjct 559 TCGTTTTTTCAACCAGAAAATGGAACAAAAAGCACCTGAGAAGAAAATTCCTTCCACTGC 500 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 130206 || || |||| | ||||| || || || | || ||||| ||| | || || Sbjct 499 TGCAAAAGCAATCAATCGCTCTGCGAA------AGAATCTGAATCAATCCATTGAATTGC 446 Query 130207 CCACTGCGCCTTTTTCTCGATA 130228 ||| | ||| || || | |||| Sbjct 445 CCAGTCCGCTTTCTTTTTGATA 424 >seq478780 Length=440 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 14236 ACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGT--TGATTTTCACGGGCAACT 14293 ||| || || |||||||||||||| || | |||||| ||| |||||| || | Sbjct 440 ACCTACAGCATCAATTTCATCGATAAAGATGATACAAGGTGCAGATTTT--TTAGCTTGT 383 Query 14294 TCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCG 14353 ||||| ||||| ||||| | ||||| ||||| |||||||| |||||||||| | Sbjct 382 TCAAACATATCACGCACACGAGATGCACCAACACCGACAAACATTTCCACAAAATCAGAA 323 Query 14354 GCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGT 14412 | ||| || | | ||| || || ||||||||||| || || || || || | ||| Sbjct 322 CCTGAA-ATGGTAAAGAATGGCACCTTAGATTCACCAGCAATAGCCTTCGCTAGTAAGGT 264 Query 14413 CTTCCCCGTCCCTGG 14427 || || || ||||| Sbjct 263 TTTACCTGTACCTGG 249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614372838319120