Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq44246 138 1e-27 seq504380 122 1e-22 seq496362 113 5e-20 seq448634 91.5 2e-13 seq478780 84.2 3e-11 >seq44246 Length=4029 Score = 138 bits (152), Expect = 1e-27 Identities = 646/1006 (64%), Gaps = 30/1006 (3%) Strand=Plus/Plus Query 104699 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 104758 |||||||||| || | ||||| || || || ||||||||||| || |||||| | Sbjct 829 GATCTCTTCTACGGCTTGTGGATCCCCGACCTGTTCATGAAGAGGGT---GGAGAGCAAC 885 Query 104759 AAT---TGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGA 104814 | |||||||| | ||||| | || || || || ||| ||| | ||| || Sbjct 886 CAGGACTGGTCTCTGATGTGTCCCAGCGAGAGCCCCGGGCTGGACGAGTGCTGGGGG-GA 944 Query 104815 GGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGAC-GGTGC 104873 ||||||||| || ||||| | || ||| || || |||| | ||| |||| Sbjct 945 GGAGTTTGAGAAGCTCTACACCCAATATGAGCGGGAGGGCCGGGTCAA-GCGTGTGGTGA 1003 Query 104874 CAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACA 104933 ||| | |||||| | || || || |||| || || ||| | || || || |||| Sbjct 1004 AGGCTCAGCAGGTGTGGCACGCCATCATCGAGTCCCAGACGGAGTCGGGCACGCCGTACA 1063 Query 104934 TGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGA 104993 |||| |||||||||||||| ||| ||||| || || |||| |||| |||||| Sbjct 1064 TGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGAACCATCAAGT 1123 Query 104994 GTTCCAATCTCTGTACAGAAATCTTGGAAT-TTACAGACAAAGATGAGACGGCTGTGTGT 105052 | ||| ||||| || |||||| | |||| | ||| |||||| ||||||||| Sbjct 1124 GCAGCAACCTCTGCACGGAAATCGTTGAATACTCCAG-TGGCGATGAGGTCGCTGTGTGT 1182 Query 105053 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTAT 105112 || || || || ||||||||| || ||| || || ||| ||| ||||| | Sbjct 1183 AATCTGGCCTCCATCGCTCTCAACATGTACGTCACCCCCGAG---CGGACTTTTGACTTC 1239 Query 105113 GAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGA 105172 | ||||| | || || ||| || || ||||| |||| | || || | Sbjct 1240 AAGAAACTGGAGTCTGTGACCAAAGTGATCGTGAAGAACCTGAACAAGATCATAGAGATT 1299 Query 105173 AATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 105229 || || ||||| || ||| | | || | || || | | | ||| | || || ||| Sbjct 1300 AACTTCTACCCGGTGCCCGAGGCCGATC---AGTCCAACAAGCGCCACAGGCCGATCGGT 1356 Query 105230 CTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGAC 105289 |||| || ||||| || || || | ||||| || || || | ||||| | | Sbjct 1357 ATCGGCGTCCAGGGCCTGGCCGACGCCTTCATCCTGATGCGTTACCCCTTTGAAAGCCCC 1416 Query 105290 GAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCG 105349 || || || | || | || ||||||||||| || ||||||| || ||||| Sbjct 1417 GAGGCCCAGCTGCTGAACATCCAGATCTTTGAGACCATCTACTACGCCGCCCTGGAGGCC 1476 Query 105350 AGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA 105409 || | || |||| | | || || || || || | |||| |||| | ||| Sbjct 1477 AGCTGCGAACTGGCCGCCGAGCTGGGCCCCTACGACACGTACGAGG---CTCCCCCGTCA 1533 Query 105410 -CAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGA-GACCAAGCTTCACTACGACTGG 105466 |||||| | || || | || ||||||| || || | ||| | | |||| | Sbjct 1534 GCAAGGGCATCCTCCAGTACGACATGTGGG-AGAAGACGCCCACCGACCTGTGGGACT-G 1591 Query 105467 GAAGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCC 105525 |||||| || ||||| ||| || | || | | ||||| || || |||| || Sbjct 1592 GAAGCTGCTGAAGGAGAAGATCGCCAAGCACGGCGTGAGGAACAGCCTGCTGCTGGCCCC 1651 Query 105526 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 105585 ||||| || ||||||||||| || ||| |||| || || || | | | || ||||||| Sbjct 1652 GATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCCTACAC 1711 Query 105586 GACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCT 105645 | |||||||| | | ||| | |||||||| ||| |||||| ||||| Sbjct 1712 CAGCAACATCTACACCCGCCGGGTCCTGTCAGGAGAGTTCCAGATCGTCAACCCCCATCT 1771 Query 105646 CGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 105691 | | ||||| | |||| || || ||| | |||| |||||| Sbjct 1772 GCTCAAGGACCTGACGGAGAGAGGGCTGTGGGGCGAGGAGATGAAG 1817 >seq504380 Length=601 Score = 122 bits (134), Expect = 1e-22 Identities = 268/391 (69%), Gaps = 22/391 (6%) Strand=Plus/Plus Query 9611 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CG 9668 |||||||||||||| || ||| | |||||| | || || || || |||||||| | Sbjct 14 TCAAAACCATCCATTTCGACCAATAATTGGTTCAGTGTCTGCTCACGCTCATCATTACCA 73 Query 9669 CTGGC-ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 9727 | | | |||||| ||| | || || || |||||||| |||||||| |||| | Sbjct 74 CCGCCCATACCAGAGCCAC---GATGACGACCGACCGCATCAATTTCATCAATAAAGATG 130 Query 9728 ATGCATGGT----TGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCC 9783 || || || | |||| || | ||| || | ||| |||||||| ||| || Sbjct 131 ATACAAGGCGCGCTCTTTTTAGCCTG----TTCGAACATATCGCGTACACGTGAGGCACC 186 Query 9784 CACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAG 9842 ||||| ||||||||||| ||||| | | | | | |||| || ||| || || |||| Sbjct 187 GACACCGACAAACATCTCAACAAAATCAGAACCTG-AGATTGAGAAGAACGGCACTTTAG 245 Query 9843 ATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGA 9902 |||||| |||||||||| ||| | | || ||||| |||||||| ||| | | | Sbjct 246 CTTCACCAGCAATGGCTCTGGCTAACAAGGTTTTACCGGTACCTGGAGGACCTACCATTA 305 Query 9903 GGGCACCTCGTGGAATCTTGGCGCCA--CTTCCAAAGTATCTCTCA-GGTTGCTTAAGAA 9959 | ||| ||||||||| | || ||| ||| || || | ||| ||| || ||| || Sbjct 306 AGATACCACGTGGAATCGTCGCACCAAGCTTGGTAA--ATTTATCAGGGTCGCGTAA-AA 362 Query 9960 AATCCACAATTTCTTCCAATTCATCTTTGGC 9990 | || || | ||| ||| ||| |||||||| Sbjct 363 ACTCGACCACTTCGACCACTTCTTCTTTGGC 393 >seq496362 Length=882 Score = 113 bits (124), Expect = 5e-20 Identities = 332/504 (66%), Gaps = 16/504 (3%) Strand=Plus/Plus Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 94497 |||||||| ||||| | ||| | ||| | ||||| |||| ||||| | | ||| Sbjct 118 TGGACTGCCGAAGAAATTGATTTGTCACAAGATTTAAACGACTGGAATAACAAGTTGAAT 177 Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557 || | ||| | | || || ||| |||| | ||||| || || | || || |||||| Sbjct 178 AAAGACGAACAATACTTTATCAAACACATTTTAGCATTTTTCGCCGCTTCAGACGGAATT 237 Query 94558 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCC 94617 || ||| ||| | | | ||||||| |||| ||||||| ||||||||| || | Sbjct 238 GTAAATGAAAATCTTGCTGAAAACTTTGTAAATGAAGTGCAATATGCTGAAGCGAAATTC 297 Query 94618 TT-CTATGCGTATCAGTGTCATAATG-AAATGGTGCATGGGGAGACATACAGTAAACTCA 94675 || ||||| || || |||| ||| ||| | || | || || || | | Sbjct 298 TTTCTATG-GTTTCCAAATCATGATGGAAAATATTCACAGCGAAACGTATTCCTTGTTAA 356 Query 94676 TAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCT-TTGAAGCCATCCAAACA 94734 | |||| ||| | || || | || ||||| ||| | | | || || ||| || Sbjct 357 TCGACACTTATGTAAAAGACGAAGCAGAGAA--AGCCGATTTATTCAACGCATTAGAAGT 414 Query 94735 GTTCCGTG-TATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCG 94793 || | || ||| ||||||||||||| ||||| || | ||| ||||| || | Sbjct 415 TTTTCCTGCTATCAAAAAGAAAGCGGACTGGGCAATTCAATGGATTGATTCAGA------ 468 Query 94794 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 94853 ||| || || |||||| | | || ||||| || || || || |||||||| ||| | Sbjct 469 TTCTTTCGCAGAGCGATTGATTGCTTTTGCAGCAGTGGAAGGAATTTTCTTCTCAGGTGC 528 Query 94854 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 94913 || || | |||| ||| | || || |||||| | |||||||| | ||||| || Sbjct 529 TTTTTGTTCCATTTTCTGGTTGAAAAAACGAGGTTTGATGCCAGGATTGACATTCTCAAA 588 Query 94914 CGAGCTTATCTCTCGTGACGAGGG 94937 ||| | || ||||||||||| || Sbjct 589 CGAATTGATTTCTCGTGACGAAGG 612 >seq448634 Length=577 Score = 91.5 bits (100), Expect = 2e-13 Identities = 219/324 (68%), Gaps = 12/324 (4%) Strand=Plus/Minus Query 9571 GCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGT 9630 ||| || || || || || || | ||||||| | | | ||||||||||||| || Sbjct 545 GCGGTTAGTTGCAGCAATAACGATAATACCTTCGTTACCACCAAAACCATCCATTTCGAC 486 Query 9631 CAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGC-ATACCACCAGCACT 9687 | | |||||| | ||||| || ||||| || || ||| | | |||||| | ||| Sbjct 485 TAGCATTTGGTTTAGCGTTTGCTCACGTTCGTCGTTACCGCCGCCCATACCAGCGCCAC- 427 Query 9688 GCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT--TGATTTTCG 9745 ||| || || ||||| || |||||||| |||| || || ||| || |||| Sbjct 426 --GTTTACGACCTACAGCATCTATTTCATCAATAAAGATAATACAGGGTGATGCTTTTTT 369 Query 9746 CGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACA 9805 ||| || || | ||| ||||| || |||||||||||||||||||| || ||| Sbjct 368 --AGCTTGCTCGAACATATCTCGTACGCGAGATGCGCCCACACCAACAAACATTTCAACA 311 Query 9806 AAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGC 9864 |||| | | ||| || | | ||| || || || | |||||| |||| |||| || Sbjct 310 AAGTCCGAACCAGAA-ATAGTAAAGAACGGCACTTTTGCTTCACCAGCAACGGCTTTAGC 252 Query 9865 GAGAAGAGTCTTACCCGTACCTGG 9888 || | || ||||| ||||| || Sbjct 251 AAGTAACGTTTTACCTGTACCAGG 228 >seq478780 Length=440 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/196 (71%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 9698 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTT--GATTTTCGCGAGCGACTT 9755 || || |||||||| ||||| || |||| ||| || ||| |||||| ||| || Sbjct 439 CCTACAGCATCAATTTCATCGATAAAGATGATACAAGGTGCAGATTTTTT--AGCTTGTT 382 Query 9756 CAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 9815 |||| | ||| || ||||| || || ||||| |||||||| |||||||| | | Sbjct 381 CAAACATATCACGCACACGAGATGCACCAACACCGACAAACATTTCCACAAAATCAGAAC 322 Query 9816 CGGAACATTGGAT-GAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9874 | ||| || | | ||| || || ||||||||||| ||||| || || || | || Sbjct 321 CTGAA-ATGGTAAAGAATGGCACCTTAGATTCACCAGCAATAGCCTTCGCTAGTAAGGTT 263 Query 9875 TTACCCGTACCTGGCT 9890 ||||| |||||||||| Sbjct 262 TTACCTGTACCTGGCT 247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579429491038480