Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq44246 138 1e-27
seq504380 122 1e-22
seq496362 113 5e-20
seq448634 91.5 2e-13
seq478780 84.2 3e-11
>seq44246
Length=4029
Score = 138 bits (152), Expect = 1e-27
Identities = 646/1006 (64%), Gaps = 30/1006 (3%)
Strand=Plus/Plus
Query 104699 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 104758
|||||||||| || | ||||| || || || ||||||||||| || |||||| |
Sbjct 829 GATCTCTTCTACGGCTTGTGGATCCCCGACCTGTTCATGAAGAGGGT---GGAGAGCAAC 885
Query 104759 AAT---TGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGA 104814
| |||||||| | ||||| | || || || || ||| ||| | ||| ||
Sbjct 886 CAGGACTGGTCTCTGATGTGTCCCAGCGAGAGCCCCGGGCTGGACGAGTGCTGGGGG-GA 944
Query 104815 GGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGAC-GGTGC 104873
||||||||| || ||||| | || ||| || || |||| | ||| ||||
Sbjct 945 GGAGTTTGAGAAGCTCTACACCCAATATGAGCGGGAGGGCCGGGTCAA-GCGTGTGGTGA 1003
Query 104874 CAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACA 104933
||| | |||||| | || || || |||| || || ||| | || || || ||||
Sbjct 1004 AGGCTCAGCAGGTGTGGCACGCCATCATCGAGTCCCAGACGGAGTCGGGCACGCCGTACA 1063
Query 104934 TGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGA 104993
|||| |||||||||||||| ||| ||||| || || |||| |||| ||||||
Sbjct 1064 TGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGAACCATCAAGT 1123
Query 104994 GTTCCAATCTCTGTACAGAAATCTTGGAAT-TTACAGACAAAGATGAGACGGCTGTGTGT 105052
| ||| ||||| || |||||| | |||| | ||| |||||| |||||||||
Sbjct 1124 GCAGCAACCTCTGCACGGAAATCGTTGAATACTCCAG-TGGCGATGAGGTCGCTGTGTGT 1182
Query 105053 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTAT 105112
|| || || || ||||||||| || ||| || || ||| ||| ||||| |
Sbjct 1183 AATCTGGCCTCCATCGCTCTCAACATGTACGTCACCCCCGAG---CGGACTTTTGACTTC 1239
Query 105113 GAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGA 105172
| ||||| | || || ||| || || ||||| |||| | || || |
Sbjct 1240 AAGAAACTGGAGTCTGTGACCAAAGTGATCGTGAAGAACCTGAACAAGATCATAGAGATT 1299
Query 105173 AATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 105229
|| || ||||| || ||| | | || | || || | | | ||| | || || |||
Sbjct 1300 AACTTCTACCCGGTGCCCGAGGCCGATC---AGTCCAACAAGCGCCACAGGCCGATCGGT 1356
Query 105230 CTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGAC 105289
|||| || ||||| || || || | ||||| || || || | ||||| | |
Sbjct 1357 ATCGGCGTCCAGGGCCTGGCCGACGCCTTCATCCTGATGCGTTACCCCTTTGAAAGCCCC 1416
Query 105290 GAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCG 105349
|| || || | || | || ||||||||||| || ||||||| || |||||
Sbjct 1417 GAGGCCCAGCTGCTGAACATCCAGATCTTTGAGACCATCTACTACGCCGCCCTGGAGGCC 1476
Query 105350 AGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA 105409
|| | || |||| | | || || || || || | |||| |||| | |||
Sbjct 1477 AGCTGCGAACTGGCCGCCGAGCTGGGCCCCTACGACACGTACGAGG---CTCCCCCGTCA 1533
Query 105410 -CAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGA-GACCAAGCTTCACTACGACTGG 105466
|||||| | || || | || ||||||| || || | ||| | | |||| |
Sbjct 1534 GCAAGGGCATCCTCCAGTACGACATGTGGG-AGAAGACGCCCACCGACCTGTGGGACT-G 1591
Query 105467 GAAGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCC 105525
|||||| || ||||| ||| || | || | | ||||| || || |||| ||
Sbjct 1592 GAAGCTGCTGAAGGAGAAGATCGCCAAGCACGGCGTGAGGAACAGCCTGCTGCTGGCCCC 1651
Query 105526 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 105585
||||| || ||||||||||| || ||| |||| || || || | | | || |||||||
Sbjct 1652 GATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCCTACAC 1711
Query 105586 GACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCT 105645
| |||||||| | | ||| | |||||||| ||| |||||| |||||
Sbjct 1712 CAGCAACATCTACACCCGCCGGGTCCTGTCAGGAGAGTTCCAGATCGTCAACCCCCATCT 1771
Query 105646 CGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 105691
| | ||||| | |||| || || ||| | |||| ||||||
Sbjct 1772 GCTCAAGGACCTGACGGAGAGAGGGCTGTGGGGCGAGGAGATGAAG 1817
>seq504380
Length=601
Score = 122 bits (134), Expect = 1e-22
Identities = 268/391 (69%), Gaps = 22/391 (6%)
Strand=Plus/Plus
Query 9611 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CG 9668
|||||||||||||| || ||| | |||||| | || || || || |||||||| |
Sbjct 14 TCAAAACCATCCATTTCGACCAATAATTGGTTCAGTGTCTGCTCACGCTCATCATTACCA 73
Query 9669 CTGGC-ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 9727
| | | |||||| ||| | || || || |||||||| |||||||| |||| |
Sbjct 74 CCGCCCATACCAGAGCCAC---GATGACGACCGACCGCATCAATTTCATCAATAAAGATG 130
Query 9728 ATGCATGGT----TGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCC 9783
|| || || | |||| || | ||| || | ||| |||||||| ||| ||
Sbjct 131 ATACAAGGCGCGCTCTTTTTAGCCTG----TTCGAACATATCGCGTACACGTGAGGCACC 186
Query 9784 CACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAG 9842
||||| ||||||||||| ||||| | | | | | |||| || ||| || || ||||
Sbjct 187 GACACCGACAAACATCTCAACAAAATCAGAACCTG-AGATTGAGAAGAACGGCACTTTAG 245
Query 9843 ATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGA 9902
|||||| |||||||||| ||| | | || ||||| |||||||| ||| | | |
Sbjct 246 CTTCACCAGCAATGGCTCTGGCTAACAAGGTTTTACCGGTACCTGGAGGACCTACCATTA 305
Query 9903 GGGCACCTCGTGGAATCTTGGCGCCA--CTTCCAAAGTATCTCTCA-GGTTGCTTAAGAA 9959
| ||| ||||||||| | || ||| ||| || || | ||| ||| || ||| ||
Sbjct 306 AGATACCACGTGGAATCGTCGCACCAAGCTTGGTAA--ATTTATCAGGGTCGCGTAA-AA 362
Query 9960 AATCCACAATTTCTTCCAATTCATCTTTGGC 9990
| || || | ||| ||| ||| ||||||||
Sbjct 363 ACTCGACCACTTCGACCACTTCTTCTTTGGC 393
>seq496362
Length=882
Score = 113 bits (124), Expect = 5e-20
Identities = 332/504 (66%), Gaps = 16/504 (3%)
Strand=Plus/Plus
Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 94497
|||||||| ||||| | ||| | ||| | ||||| |||| ||||| | | |||
Sbjct 118 TGGACTGCCGAAGAAATTGATTTGTCACAAGATTTAAACGACTGGAATAACAAGTTGAAT 177
Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557
|| | ||| | | || || ||| |||| | ||||| || || | || || ||||||
Sbjct 178 AAAGACGAACAATACTTTATCAAACACATTTTAGCATTTTTCGCCGCTTCAGACGGAATT 237
Query 94558 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCC 94617
|| ||| ||| | | | ||||||| |||| ||||||| ||||||||| || |
Sbjct 238 GTAAATGAAAATCTTGCTGAAAACTTTGTAAATGAAGTGCAATATGCTGAAGCGAAATTC 297
Query 94618 TT-CTATGCGTATCAGTGTCATAATG-AAATGGTGCATGGGGAGACATACAGTAAACTCA 94675
|| ||||| || || |||| ||| ||| | || | || || || | |
Sbjct 298 TTTCTATG-GTTTCCAAATCATGATGGAAAATATTCACAGCGAAACGTATTCCTTGTTAA 356
Query 94676 TAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCT-TTGAAGCCATCCAAACA 94734
| |||| ||| | || || | || ||||| ||| | | | || || ||| ||
Sbjct 357 TCGACACTTATGTAAAAGACGAAGCAGAGAA--AGCCGATTTATTCAACGCATTAGAAGT 414
Query 94735 GTTCCGTG-TATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCG 94793
|| | || ||| ||||||||||||| ||||| || | ||| ||||| || |
Sbjct 415 TTTTCCTGCTATCAAAAAGAAAGCGGACTGGGCAATTCAATGGATTGATTCAGA------ 468
Query 94794 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 94853
||| || || |||||| | | || ||||| || || || || |||||||| ||| |
Sbjct 469 TTCTTTCGCAGAGCGATTGATTGCTTTTGCAGCAGTGGAAGGAATTTTCTTCTCAGGTGC 528
Query 94854 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 94913
|| || | |||| ||| | || || |||||| | |||||||| | ||||| ||
Sbjct 529 TTTTTGTTCCATTTTCTGGTTGAAAAAACGAGGTTTGATGCCAGGATTGACATTCTCAAA 588
Query 94914 CGAGCTTATCTCTCGTGACGAGGG 94937
||| | || ||||||||||| ||
Sbjct 589 CGAATTGATTTCTCGTGACGAAGG 612
>seq448634
Length=577
Score = 91.5 bits (100), Expect = 2e-13
Identities = 219/324 (68%), Gaps = 12/324 (4%)
Strand=Plus/Minus
Query 9571 GCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGT 9630
||| || || || || || || | ||||||| | | | ||||||||||||| ||
Sbjct 545 GCGGTTAGTTGCAGCAATAACGATAATACCTTCGTTACCACCAAAACCATCCATTTCGAC 486
Query 9631 CAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGC-ATACCACCAGCACT 9687
| | |||||| | ||||| || ||||| || || ||| | | |||||| | |||
Sbjct 485 TAGCATTTGGTTTAGCGTTTGCTCACGTTCGTCGTTACCGCCGCCCATACCAGCGCCAC- 427
Query 9688 GCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT--TGATTTTCG 9745
||| || || ||||| || |||||||| |||| || || ||| || ||||
Sbjct 426 --GTTTACGACCTACAGCATCTATTTCATCAATAAAGATAATACAGGGTGATGCTTTTTT 369
Query 9746 CGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACA 9805
||| || || | ||| ||||| || |||||||||||||||||||| || |||
Sbjct 368 --AGCTTGCTCGAACATATCTCGTACGCGAGATGCGCCCACACCAACAAACATTTCAACA 311
Query 9806 AAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGC 9864
|||| | | ||| || | | ||| || || || | |||||| |||| |||| ||
Sbjct 310 AAGTCCGAACCAGAA-ATAGTAAAGAACGGCACTTTTGCTTCACCAGCAACGGCTTTAGC 252
Query 9865 GAGAAGAGTCTTACCCGTACCTGG 9888
|| | || ||||| ||||| ||
Sbjct 251 AAGTAACGTTTTACCTGTACCAGG 228
>seq478780
Length=440
Score = 84.2 bits (92), Expect = 3e-11
Identities = 139/196 (71%), Gaps = 6/196 (3%)
Strand=Plus/Minus
Query 9698 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTT--GATTTTCGCGAGCGACTT 9755
|| || |||||||| ||||| || |||| ||| || ||| |||||| ||| ||
Sbjct 439 CCTACAGCATCAATTTCATCGATAAAGATGATACAAGGTGCAGATTTTTT--AGCTTGTT 382
Query 9756 CAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 9815
|||| | ||| || ||||| || || ||||| |||||||| |||||||| | |
Sbjct 381 CAAACATATCACGCACACGAGATGCACCAACACCGACAAACATTTCCACAAAATCAGAAC 322
Query 9816 CGGAACATTGGAT-GAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9874
| ||| || | | ||| || || ||||||||||| ||||| || || || | ||
Sbjct 321 CTGAA-ATGGTAAAGAATGGCACCTTAGATTCACCAGCAATAGCCTTCGCTAGTAAGGTT 263
Query 9875 TTACCCGTACCTGGCT 9890
||||| ||||||||||
Sbjct 262 TTACCTGTACCTGGCT 247
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 579429491038480
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