Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq44246 248 9e-61
seq94501 100 3e-16
seq28532 87.8 2e-12
>seq44246
Length=4029
Score = 248 bits (274), Expect = 9e-61
Identities = 482/703 (69%), Gaps = 14/703 (2%)
Strand=Plus/Plus
Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326
|||| || || |||||| | || || || |||||||| || || || | |||||| |
Sbjct 436 AAGTGGTTCACCCACGCCTCCCCCACGCTCTTCAACGCAGGAACCAACCGGCCTCAGCTC 495
Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386
|| |||||||||||| | | |||||||| ||| ||||| ||||||||||| |||||
Sbjct 496 TCCAGCTGCTTCCTGCTCACCATGAAGGACGACAGCATCGAGGGCATCTACGACACGCTG 555
Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT---CCACTGCTCGAAC 53443
||| ||||||| | ||||||||||| | | || || |||||| | | | ||| |
Sbjct 556 AAGCAGTGTGCACTCATCTCCAAGTCGGCAGGAGGAATCGGTGTGGCCGTCAGCT---GC 612
Query 53444 GTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCT 53503
|||| | | ||| | ||| || || |||||| | || | || | || ||
Sbjct 613 ATCCGATCCACCGGGAGCTACATCGCCGGCACCAACGGCAACTCCAACGGGCTGGTCCCC 672
Query 53504 ATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAG 53563
||||| | |||| ||||||||| || || || ||| ||||||| || |||||
Sbjct 673 ATGCTGAGGGTCTACAACAACACAGCACGCTATGTCGACCAGGGCGGCAACAAGCGACCC 732
Query 53564 GGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTG 53623
|| | |||||||| ||||| |||||||||||| ||| | | || || || ||||||
Sbjct 733 GGCGCCTTCGCCATGTACCTGGAGCCGTGGCACTTTGACGTGTTCGACTTCCTGGAGCTG 792
Query 53624 CGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGAT 53682
||| ||| | || ||| | | | | || || || ||| ||| |||||||
Sbjct 793 AAGAAGAACACGGGGAAGGAGGAGCAGAGAGCCAGAGATCTCTTCTACGGCT-TGTGGAT 851
Query 53683 TCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAA 53742
|| ||||| |||||| | | |||||||| || |||| |||| |||||||| || |
Sbjct 852 CCCCGACCTGTTCATGAAGAGGGTGGAGAGCAACCAGGACTGGTCTCTGATGTGTCCCAG 911
Query 53743 CGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGT--ATCGGAC 53799
|||| ||||||| || | | ||| || || ||||||||| | || | | | | |
Sbjct 912 CGAGAGCCCCGGGCTGGACGAGTG-CTGGGGGGAGGAGTTTGAGAAGCTCTACACCCAAT 970
Query 53800 GTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAAT 53859
| || | ||||||| |||| ||| ||||| | |||| ||| | || ||
Sbjct 971 ATGAGCGG--GAGGGCCGGGTCAAGCGTGTGGTGAAGGCTCAGCAGGTGTGGCACGCCAT 1028
Query 53860 CCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGA 53919
| || || |||| |||| |||| |||||||||||| ||||| || | ||||
Sbjct 1029 CATCGAGTCCCAGACGGAGTCGGGCACGCCGTACATGCTGTACAAAGACGCCTGCAACAG 1088
Query 53920 GAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962
||||||||||||| ||||| | || |||||| | ||||||
Sbjct 1089 GAAGAGCAACCAGCAGAACCTGGGAACCATCAAGTGCAGCAAC 1131
Score = 96.9 bits (106), Expect = 4e-15
Identities = 110/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551
|||||| |||| || ||||| || || || || || |||||| |||||||||||||| |
Sbjct 1637 CCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTC 1696
Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCAT 55611
||||| | ||||| | |||||||||| |||||| ||| |||| ||||| ||
Sbjct 1697 CATCGAGGCCTACACCAGCAACATCTACACCCGCCGGGTCCTGTCAGGAGAGTTCCAGAT 1756
Query 55612 GATCAACAAGCACCTCGTCAAGGACCTG 55639
||||| || || |||||||||||
Sbjct 1757 CGTCAACCCCCATCTGCTCAAGGACCTG 1784
>seq94501
Length=6169
Score = 100 bits (110), Expect = 3e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|| ||||||||||||| ||| |||||||| ||||| ||| | || ||||| || ||
Sbjct 2623 GTAAAAATGTAACGAGGGCTGGCAGCATCTTTGCCTCCATTGATGCGAGTACCAAACTGA 2682
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
|| |||| || || ||||| ||||||| |||||||||||| || |||||||| |||
Sbjct 2683 CCGAGAGGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGGGCCAAGTTCACA 2742
Query 117425 ATCGT 117429
|| ||
Sbjct 2743 ATGGT 2747
>seq28532
Length=8763
Score = 87.8 bits (96), Expect = 2e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831
||||| ||||| |||| ||||| || || | ||| || ||||| | || | |||||||
Sbjct 1943 TCATCCCTGCTAATCAGCTCATTGGAGAAGGTAAGCCCGGGCATTAAGCCTCTCTTCTTC 1884
Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891
| ||||||||||||| ||| ||||| ||||||||| || || || ||||| ||
Sbjct 1883 AGCCAAAAGATGGCAGCGAACGAACCGGAGAAGAAGATTCCCTCCACGGCAGCAAAAGCC 1824
Query 74892 ACAAGGCG 74899
|||| |||
Sbjct 1823 ACAATGCG 1816
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543621461219600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |