Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq44246 248 9e-61 seq94501 100 3e-16 seq28532 87.8 2e-12 >seq44246 Length=4029 Score = 248 bits (274), Expect = 9e-61 Identities = 482/703 (69%), Gaps = 14/703 (2%) Strand=Plus/Plus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| || || |||||| | || || || |||||||| || || || | |||||| | Sbjct 436 AAGTGGTTCACCCACGCCTCCCCCACGCTCTTCAACGCAGGAACCAACCGGCCTCAGCTC 495 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || |||||||||||| | | |||||||| ||| ||||| ||||||||||| ||||| Sbjct 496 TCCAGCTGCTTCCTGCTCACCATGAAGGACGACAGCATCGAGGGCATCTACGACACGCTG 555 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT---CCACTGCTCGAAC 53443 ||| ||||||| | ||||||||||| | | || || |||||| | | | ||| | Sbjct 556 AAGCAGTGTGCACTCATCTCCAAGTCGGCAGGAGGAATCGGTGTGGCCGTCAGCT---GC 612 Query 53444 GTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCT 53503 |||| | | ||| | ||| || || |||||| | || | || | || || Sbjct 613 ATCCGATCCACCGGGAGCTACATCGCCGGCACCAACGGCAACTCCAACGGGCTGGTCCCC 672 Query 53504 ATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAG 53563 ||||| | |||| ||||||||| || || || ||| ||||||| || ||||| Sbjct 673 ATGCTGAGGGTCTACAACAACACAGCACGCTATGTCGACCAGGGCGGCAACAAGCGACCC 732 Query 53564 GGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTG 53623 || | |||||||| ||||| |||||||||||| ||| | | || || || |||||| Sbjct 733 GGCGCCTTCGCCATGTACCTGGAGCCGTGGCACTTTGACGTGTTCGACTTCCTGGAGCTG 792 Query 53624 CGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGAT 53682 ||| ||| | || ||| | | | | || || || ||| ||| ||||||| Sbjct 793 AAGAAGAACACGGGGAAGGAGGAGCAGAGAGCCAGAGATCTCTTCTACGGCT-TGTGGAT 851 Query 53683 TCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAA 53742 || ||||| |||||| | | |||||||| || |||| |||| |||||||| || | Sbjct 852 CCCCGACCTGTTCATGAAGAGGGTGGAGAGCAACCAGGACTGGTCTCTGATGTGTCCCAG 911 Query 53743 CGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGT--ATCGGAC 53799 |||| ||||||| || | | ||| || || ||||||||| | || | | | | | Sbjct 912 CGAGAGCCCCGGGCTGGACGAGTG-CTGGGGGGAGGAGTTTGAGAAGCTCTACACCCAAT 970 Query 53800 GTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAAT 53859 | || | ||||||| |||| ||| ||||| | |||| ||| | || || Sbjct 971 ATGAGCGG--GAGGGCCGGGTCAAGCGTGTGGTGAAGGCTCAGCAGGTGTGGCACGCCAT 1028 Query 53860 CCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGA 53919 | || || |||| |||| |||| |||||||||||| ||||| || | |||| Sbjct 1029 CATCGAGTCCCAGACGGAGTCGGGCACGCCGTACATGCTGTACAAAGACGCCTGCAACAG 1088 Query 53920 GAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 ||||||||||||| ||||| | || |||||| | |||||| Sbjct 1089 GAAGAGCAACCAGCAGAACCTGGGAACCATCAAGTGCAGCAAC 1131 Score = 96.9 bits (106), Expect = 4e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 |||||| |||| || ||||| || || || || || |||||| |||||||||||||| | Sbjct 1637 CCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTC 1696 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCAT 55611 ||||| | ||||| | |||||||||| |||||| ||| |||| ||||| || Sbjct 1697 CATCGAGGCCTACACCAGCAACATCTACACCCGCCGGGTCCTGTCAGGAGAGTTCCAGAT 1756 Query 55612 GATCAACAAGCACCTCGTCAAGGACCTG 55639 ||||| || || ||||||||||| Sbjct 1757 CGTCAACCCCCATCTGCTCAAGGACCTG 1784 >seq94501 Length=6169 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 || ||||||||||||| ||| |||||||| ||||| ||| | || ||||| || || Sbjct 2623 GTAAAAATGTAACGAGGGCTGGCAGCATCTTTGCCTCCATTGATGCGAGTACCAAACTGA 2682 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || || ||||| ||||||| |||||||||||| || |||||||| ||| Sbjct 2683 CCGAGAGGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGGGCCAAGTTCACA 2742 Query 117425 ATCGT 117429 || || Sbjct 2743 ATGGT 2747 >seq28532 Length=8763 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||| ||||| |||| ||||| || || | ||| || ||||| | || | ||||||| Sbjct 1943 TCATCCCTGCTAATCAGCTCATTGGAGAAGGTAAGCCCGGGCATTAAGCCTCTCTTCTTC 1884 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||||||||||||| ||| ||||| ||||||||| || || || ||||| || Sbjct 1883 AGCCAAAAGATGGCAGCGAACGAACCGGAGAAGAAGATTCCCTCCACGGCAGCAAAAGCC 1824 Query 74892 ACAAGGCG 74899 |||| ||| Sbjct 1823 ACAATGCG 1816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543621461219600