Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq44246 241 1e-58 seq6427 140 4e-28 seq152719 136 4e-27 seq59938 131 2e-25 seq59939 127 2e-24 seq152718 109 6e-19 seq103378 104 3e-17 seq353404 96.9 4e-15 seq496362 95.1 1e-14 >seq44246 Length=4029 Score = 241 bits (266), Expect = 1e-58 Identities = 905/1393 (65%), Gaps = 66/1393 (5%) Strand=Plus/Minus Query 80395 GTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATC 80454 ||||| | ||| | | ||||||||| || |||||||| || ||| ||||| |||||| Sbjct 1711 GTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATC 1652 Query 80455 GGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAA-ATCTGA 80513 ||| | | || ||| |||| || ||||||||| ||| | ||| || | || Sbjct 1651 GGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTTC 1592 Query 80514 CCAAAAATCAACCCCAACGCTGTGACC--------CCACATGTCGTGCTGCAAGATGCCC 80565 | | || || || | ||| | ||||||||||| ||| | ||||||| Sbjct 1591 C----AGTC--CCACAGGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCC 1538 Query 80566 T--CCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCAC 80623 | | |||| |||| || || |||| ||||| |||||| | |||||| || | Sbjct 1537 TTGCTGACGGGGGAG---CCTCGTACGTGTCGTAGGGGCCCAGCTCGGCGGCCAGTTCGC 1481 Query 80624 AC---GACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGC 80680 | | ||||| |||| |||| || ||| |||||||| |||||| | || Sbjct 1480 AGCTGGCCTCCA---GGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGTTCAG-CAGC 1425 Query 80681 -GCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGA 80739 | |||| ||| || || | | | ||||| ||||| |||| ||||||||||| Sbjct 1424 TGGGCCTCGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGCCAGGCCCTGG 1365 Query 80740 ACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAA 80799 |||||||| ||||||| | |||||||||||| || | |||||||| || | ||||| Sbjct 1364 ACGCCGATACCGATCGGCCTGTGGCGCTTGTTGGACTGATCGGCCTCGGGCACCGGGTAG 1305 Query 80800 AAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGT--GTAACATCATGAA 80857 |||||| | || |||| ||||||||| | | | | | | || ||| | | Sbjct 1304 AAGTTAATCTCTATGATCTTGTTCAGGTT--CTTCACGATCACTTTGGTCACAGACTCCA 1247 Query 80858 GTTTCTGAAAGTCGAATTGGTTCCCCTTCACAAATGCCGGA-AGGCTCAG------GGAC 80910 |||||| ||||| || || || || || || | | | | || ||| Sbjct 1246 GTTTCTTGAAGTCAAA--AGT--CCGCTCGGGGGTGACGTACATGTTGAGAGCGATGGAG 1191 Query 80911 GCCAGATTGCACACGGCCACCTCTTCAGCATCTGTA-AACTCGACGATTTCCGTGCACAA 80969 |||||||| ||||| || ||||| || || ||| | | || |||||||||||||| | Sbjct 1190 GCCAGATTACACACAGCGACCTCATC-GCCACTGGAGTATTCAACGATTTCCGTGCAGAG 1132 Query 80970 ATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTT 81029 || |||| || || |||||||| | |||||| ||| |||||| ||||| || Sbjct 1131 GTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTT 1072 Query 81030 GTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTC 81089 ||| ||||||||| || || | ||| ||| |||| || |||||||| ||| | || Sbjct 1071 GTACAGCATGTACGGCGTGCCCGACTCCGTCTGGGACTCGATGATGGCGTGCCACACCTG 1012 Query 81090 GCGCGCCTTGACCAC---CTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTT 81145 | ||||| ||||| ||| || ||| || | |||| | || ||| ||||| Sbjct 1011 CTGAGCCTTCACCACACGCTT---GACCCGGCCCTCCCGCTCATATTGGGTGTAGAGCTT 955 Query 81146 CGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGT 81205 | || |||| | || || || | |||| |||| | || |||||||| Sbjct 954 C-TCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCTCTCGCTGGGACACATCAGAG 896 Query 81206 GCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGA 81265 |||||| || | |||| || ||||||||| ||| |||||||| | | || || Sbjct 895 ACCAGTCCTGGTTGCTCTCCACCCTCTTCATGAACAGGTCGGGGATCCACAAGCCGTAGA 836 Query 81266 ACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCA 81325 | || || | | | | |||||| | ||| ||| || ||| || ||||| | Sbjct 835 AGAGATCTCTGGCTCTCTGCTCCTCCTTCCCCGTGTTCTTCTTCAGCTCCAGGAAGTCGA 776 Query 81326 TGATGTCCGCATGCCATGGCTCCAGATACACGGCGA--TCGAC----CCCTTGCGACGGC 81379 | ||| ||||| |||||||| |||| ||||| || | | |||| || Sbjct 775 ACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGTCGCTTG---TTGC 719 Query 81380 CACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCAT 81439 | ||||||| ||| || || || || ||| | || | || ||| |||| | || | Sbjct 718 CGCCCTGGTCGACATAGCGTGCTGTGTTGTTGTAGACCCTCAGCATGGGGACCAGCCCGT 659 Query 81440 CTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAA 81499 || | ||||| || || |||| ||| ||| || | ||||| | | Sbjct 658 TGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCGGTGGATCGGATGCAGCTGACGGCCA 599 Query 81500 GACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTC 81559 |||||| || |||| | |||| || || | |||||| | |||| || || || || | Sbjct 598 CACCGATTCCTCCTGCCGACTTGGAGATGAGTGCACACTGCTTCAGCGTGTCGTAGATGC 539 Query 81560 CCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTG 81619 |||||||||| || | |||||| |||| ||| ||||| || | |||||| | || | Sbjct 538 CCTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGAGAGCTGAGGCCGGTTGG 479 Query 81620 AGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCAT 81679 || || ||||| || || |||| ||||| |||| | | || | ||||| | Sbjct 478 TTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCCGAGAGCAGGTTGT 419 Query 81680 AGGTTTCCTTGAC-GCGTGGAATAT-CGTCACCGTGAATACCGATAGCTACACGCATAAA 81737 |||| || || | |||| | |||| |||| ||| || |||| | || | ||| | Sbjct 418 AGGTCTCGATGGCGGCGTCG-ATATCCGTC-TTGTGGATTCCGACCGACACCCTCATGAG 361 Query 81738 CATGTACTGGGGC 81750 ||||| ||| ||| Sbjct 360 CATGTGCTGCGGC 348 >seq6427 Length=3314 Score = 140 bits (154), Expect = 4e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || |||||||| || || || ||||||||| | | || | ||| | |||| | ||| Sbjct 3313 CTCACGGGCAAGACCATCACCCTGGAGGTTGAGCCCAGCGACACCATCGAAAATGTCAAG 3254 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || ||||||||||| || ||||| ||||| |||||| | || || ||||| || Sbjct 3253 GCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAGAGGCTGATCTTTGCCGGC 3194 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||| || || |||| || ||||| | ||||| || |||| ||||| ||||| || Sbjct 3193 AAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTC 3134 Query 27607 CATCTAGTCTTGCGTCT 27623 ||||| ||| | ||||| Sbjct 3133 CATCTTGTCCTCCGTCT 3117 >seq152719 Length=2073 Score = 136 bits (150), Expect = 4e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 || || |||||||| ||||| || || ||||||||||| ||||| | |||||| | Sbjct 498 ATTCAGATCTTTGTGAAGACCCTCACAGGCAAGACTATCACTCTGGTGGTTGAACCCAAC 439 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | || ||||| || ||||| ||||| || || |||||||||||| Sbjct 438 GACACCATTGAGAATGTCAAAGCTAAGATCCAGGATAAGGAAGGCATCCCTCCAGACCAG 379 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || || | || || || | ||||| || Sbjct 378 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCCGACTACAAC 319 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || || ||| ||||||| |||||||| || Sbjct 318 ATCCAGAAAGAGTCCTGCATTCATCTGGTCTTGCGGCT 281 >seq59938 Length=2926 Score = 131 bits (144), Expect = 2e-25 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || |||||||| || || || ||||||||| | | || | ||||| | Sbjct 2924 GTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGCGACACCATTGAA 2865 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||||| || || ||||||||||| || ||||| ||||| |||||| | || || Sbjct 2864 AATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAGAGGCTGATC 2805 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 ||||| || ||||| || |||| || ||||| | || || |||| ||||| Sbjct 2804 TTTGCCGGCAAGCATTCGGAAGATGGCCGCACCCT--CTCTATACAACATCCAGAAGGAG 2747 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 ||||| || | ||| ||| ||| ||| | ||||| ||| Sbjct 2746 TCCACCCTCCGTCTGGTCCTGCATCTGAGGGGTGGTCAA 2708 >seq59939 Length=800 Score = 127 bits (140), Expect = 2e-24 Identities = 127/165 (77%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || ||||||||| | || Sbjct 165 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTTGAGCCTAGT 106 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| || || ||||||||||| || ||||| ||||| ||| Sbjct 105 GACACAATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 46 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 ||| | || || ||||| || ||||| || || |||| || ||| Sbjct 45 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACC 1 >seq152718 Length=3078 Score = 109 bits (120), Expect = 6e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 || || |||||||| ||||| || || || |||||||| |||| |||||||| | || Sbjct 2601 ATTCAGATCTTTGTGAAGACCCTCACAGGGAAGACTATAGCTCTGGAGGTTGAACCCAGT 2542 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||||| || || || || || || ||||| ||| | ||| |||||||| Sbjct 2541 GACACCATTGATAATTTCAAAGCCAAGATCCAAGATAAGGAAGGATTCCCTACAGACCAG 2482 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || | |||| || |||| || || || || || || | || || | Sbjct 2481 CAGAGGCTCAACTTTGGCGGCAAGCTGCTGGAAGACAGCCGCACTCTCTCCGAATACAGC 2422 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || || || || || ||||| |||||||| || Sbjct 2421 ATCCAGAAAGAGTCTACCCTCCATCTGGTCTTGCGGCT 2384 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 || || |||||||| ||||| || | | ||||| | ||||||||| ||||||| || Sbjct 2145 ATCCAGATCTTTGTGAAGACCCTGATTGCTAAGACCACCACTCTTGAGATTGAGTCCAGT 2086 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | || || |||||||| ||| | || || | |||||| ||| Sbjct 2085 GACACCATCGAGAATGTCAAATACAAGATTCAGGATAAGAAAGGCATCCATCCAGAGCAG 2026 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || | || || || || || |||| || || | | ||||| || Sbjct 2025 CAGAGCCTGATCTTCGAGGGCAAACAGCTGGATGATGGCCGGACTCCCTCCGACTACAAC 1966 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | ||||||||||||| | |||||| || Sbjct 1965 AGCAAAAAGGAATCCAC-CCTCATCTCGT 1938 >seq103378 Length=1867 Score = 104 bits (114), Expect = 3e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||| || || || ||||||| ||| || || || || ||||| || | |||||| Sbjct 1781 ACTCCACTATCTCTGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGTTGC 1722 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| ||||||| |||||||||||| ||||||||| ||||| || || |||||||| Sbjct 1721 TCTTCCCGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTTTCAGTCTGTGACT 1662 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC 81104 || |||||||| ||| | || | ||||| ||||| Sbjct 1661 CGATGATGGCGTACCACAGCTGCTGAGCCTTCACCAC 1625 >seq353404 Length=992 Score = 96.9 bits (106), Expect = 4e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| |||| || || ||||||||||| || || ||||||||| | || Sbjct 92 ATGCAGATCTTTGTGAAGAACCTGACAGGCAAGACTATCACCCTGGAGGTTGAGCCCAGT 151 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCT 27516 |||| |||| ||| | ||||| ||||| |||||||| ||||| || ||| Sbjct 152 GATACTATTGAGAATGTCAAGGCCAAAATCCAGGACAAAGAGGGCATCCCT 202 >seq496362 Length=882 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785 |||||||| ||||||||||||||||| || || | || ||||| ||||||||| | Sbjct 491 GCTTTTGCAGCAGTGGAAGGAATTTTCTTCTCAGGTGCTTTTTGTTCCATTTTCTGGTTG 550 Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAG 64845 ||||| || || |||||||||| || | || || ||||| |||| ||||| ||||| Sbjct 551 AAAAAACGAGGTTTGATGCCAGGATTGACATTCTCAAACGAATTGATTTCTCGTGACGAA 610 Query 64846 GG 64847 || Sbjct 611 GG 612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566564159302240