Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_028659.1 Length=142987 Score E Sequences producing significant alignments: (Bits) Value seq262635 96.9 3e-15 seq520838 93.3 4e-14 seq510375 93.3 4e-14 >seq262635 Length=4132 Score = 96.9 bits (106), Expect = 3e-15 Identities = 121/164 (74%), Gaps = 4/164 (2%) Strand=Plus/Minus Query 101492 TTTCCCGGTGTACTTGCATCCTGAAACCAAAGAAGAATACGCACTGGCCCGTACTGAGCG 101551 ||| ||||| ||||| || || |||||||||||||||| ||||| | || |||||||| Sbjct 3671 TTTTCCGGTTTACTTACACCCAAAAACCAAAGAAGAATATGCACTTGGGCGCACTGAGCG 3612 Query 101552 TAAAACTGGTGAAGGCCATACTGGCTTTGAGACCTTCTT--CAGCCCGGATGTAACTCTG 101609 |||| |||| ||||| |||| || |||| | || | |||||| ||||| ||||| Sbjct 3611 AAAAAGTGGTAAAGGCTATACCGGTTTTGTG--GTTGATGCCAGCCCAGATGTGACTCTA 3554 Query 101610 GAAGAGGATTTATCGCGTCGTGACCTGACGATCAATGCGATGGC 101653 || || || ||| | | ||||| | || || || | ||||| Sbjct 3553 GAGGAAGACTTAGCCAGACGTGATTTAACTATAAACTCTATGGC 3510 >seq520838 Length=421 Score = 93.3 bits (102), Expect = 4e-14 Identities = 115/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 15298 TGAATTCTCCTAACTTCTGGGATGGTCAGACCAAAGGTAACAAACACTACTTCTTTATGC 15357 |||| || || ||| |||| || ||| || |||||||| || | ||||| ||| Sbjct 368 TGAACTCACCAAACCATTGGGGTGATCAAACTCTTGGTAACAAGCATTTGTTCTTCATGT 309 Query 15358 TGGAAGGTTGCATTAACCCTGACGATACTCGTGGCTTCTACAATGAGTATCTGCGT-GAC 15416 | || ||||| ||||||| || | | ||||| ||||||||||||| ||| | || Sbjct 308 TAGAGGGTTGTGTTAACCCAGAACCTGCGCGTGGATTCTACAATGAGT-TCTTAATGGAT 250 Query 15417 GAGCTGCATGAGCATCGTAAAGTGTTCGAAGTGTT 15451 | || |||||||||||||||||||||||||||| Sbjct 249 TCGTTGAATGAGCATCGTAAAGTGTTCGAAGTGTT 215 >seq510375 Length=538 Score = 93.3 bits (102), Expect = 4e-14 Identities = 205/304 (67%), Gaps = 4/304 (1%) Strand=Plus/Plus Query 101358 ATGAAAGTATATCTGGTAGGTGGCGCTGTTCGTGATGGTCTGCTGGGTCGTCCAGTTCAT 101417 ||| || | || || || || ||||| || || ||| ||| | | ||||| || | Sbjct 18 ATGCAAATTTACCTTGTCGGCGGCGCGGTACGCGATCAACTGTTAGCACGTCCTATTAAA 77 Query 101418 GACCGTGATTACGTGGTTGTGGGTGCAACACACGAAGAGATGATTGAAAAAGGTTTCACC 101477 || |||| || || || |||||||| | ||| ||| |||| ||| ||| Sbjct 78 GATAAAGATTTTGTCGTCGTTGGTGCAACTGTTGCAGAAATGCTTGATGCAGGGTTCCAG 137 Query 101478 CAGGTTGGCGCTGCTTTCCCGGTGTACTTGCATCCTGAAACCAAAGAAGAATACGCACTG 101537 || || || || | |||||| || | ||||||||| | | | | ||||||||||||||| Sbjct 138 CAAGTGGGTGCAGATTTCCCTGTATTTTTGCATCCTAATAGCCATGAAGAATACGCACTG 197 Query 101538 GCCCGTACTGAGCGTAAAACTGGTGAAGGCCATACTGGCTTT-GAG-ACCTTCTTCAGCC 101595 || || ||||| || ||| || || ||| |||||| | | || | | ||| | Sbjct 198 GCACGCACTGAACGCAAAGAAGGCTTGGGGTATAAAGGCTTTAGCGTACATGC--CAGTC 255 Query 101596 CGGATGTAACTCTGGAAGAGGATTTATCGCGTCGTGACCTGACGATCAATGCGATGGCTA 101655 | || || | | |||||||| || ||||| ||| ||||||| ||||| ||||| | Sbjct 256 CTGACGTCAGCTTAAAAGAGGATCTACAACGTCGAGACTTGACGATTAATGCCATGGCCA 315 Query 101656 AAGA 101659 ||| Sbjct 316 TAGA 319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 454425642624240