Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_028661.1 Length=41149 Score E Sequences producing significant alignments: (Bits) Value seq512931 432 1e-116 seq524349 242 1e-59 seq500082 172 1e-38 seq521066 158 3e-34 >seq512931 Length=538 Score = 432 bits (478), Expect = 1e-116 Identities = 420/532 (79%), Gaps = 24/532 (5%) Strand=Plus/Plus Query 39020 CCTGACCACTCCCCTTCTGTGAAGTCTGTCGGTATCACCGGTCAGT-TGACTGGTAGCCG 39078 ||||||||| ||| || |||||||| || ||| | || || | || ||||||||||||| Sbjct 10 CCTGACCACAGCCCCTCGGTGAAGTCCGTGGGTGTTACTGG-CGGTATGACTGGTAGCCG 68 Query 39079 TGCTGACATCCTCATTGCGGATGACGTTGAGGTCCCGAACAACTCTGGCACACAGGCCGC 39138 |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct 69 TGCTGACATCCTCATTGCGGATGACGTTGAGGTCCCCGGCAACTCTGGCACACAGTCCGC 128 Query 39139 TCGTGATCACCTTGGCGAACTCGTTAAGGAATTCGATGCGATCCTGAAGCCGGGCGGAAC 39198 | |||||||||||||| || || |||||||||||||||||||||||||| | ||| || Sbjct 129 AAGGGATCACCTTGGCGAGCTGGTAAAGGAATTCGATGCGATCCTGAAGCCTGACGGTAC 188 Query 39199 GATCATCTATCTGGGCACCCCTCAGACCGAGATGACCCTCTACCGCGAGCTGGAAGGCCG 39258 ||||||||| |||| ||||| |||||||| |||||||||||| | || || || | ||| Sbjct 189 GATCATCTACTTGGGAACCCCACAGACCGAAATGACCCTCTACAGGGAACTTGAGGACCG 248 Query 39259 TGGCTACGTCACTACGATCTGGCCTGCAAGATACCCTAAGGATCAAGCTGATCGTGACTC 39318 |||||| || ||||||||||||||| |||||||| |||| ||||| | ||| || Sbjct 249 CGGCTACTCGACGACGATCTGGCCTGCACGATACCCTCGGGATGTGGCTGACCTTGAGTC 308 Query 39319 CTA-TGGC---CCACG-------GCT---GGCT---CCTATGCTTGC-CAAGGACATGGA 39360 ||| |||| ||| | ||| | || ||| | ||| |||||| |||| Sbjct 309 CTACTGGCACGCCAAGGGCAAGCGCTCACGTCTGGACCTTACCATGCTCAAGGAGCTGGA 368 Query 39361 TGA--ACACGGTGCTGACTTCTGGGCTCCTACAGACCCTGTGCGATTCGATGACAAGGAC 39418 || || | |||| |||||| |||||||||||| | ||||||||||| | ||| Sbjct 369 AGACGACGAGAAGCTG--TTCTGGAAGCCTACAGACCCTATTCGATTCGATGATGAAGAC 426 Query 39419 TTGCGTGAGCGGGAACTCTCCTACGGGAAGGGTGGCTTCGCCTTGCAGTTCATGCTCAAC 39478 |||||||||| |||||||| || || |||||||||||||| | ||||||||||||||| Sbjct 427 CTGCGTGAGCGCGAACTCTCATATGGCAAGGGTGGCTTCGCTCTACAGTTCATGCTCAAC 486 Query 39479 CCGAACCTCTCGGACATGGAGAAGTACCCTCTCAAGCTGCGTGACTTCATCG 39530 |||||||| ||||| ||||||||||| | ||||||||||| | |||| Sbjct 487 CCGAACCTTAGCGACATCGAGAAGTACCCGTTGAAGCTGCGTGATTGGATCG 538 >seq524349 Length=315 Score = 242 bits (268), Expect = 1e-59 Identities = 242/311 (78%), Gaps = 7/311 (2%) Strand=Plus/Plus Query 13991 TGTGGAATGCCTCGCCGTTCGTACCTGATGGCGTGGTCTCCGCGAAGGCCCTCAAGGCTC 14050 ||||||| ||| | || ||| |||||||| |||||||| |||||| ||| |||| | Sbjct 8 TGTGGAACGCCCAGAAGTACGTCCCTGATGGTGTGGTCTCGGCGAAGTACCTTAAGGGCC 67 Query 14051 GCATCAAGGAGAAGAAAGCTGTCGCCTCGATGCCTTTGGTTGCCCCTCATGAACT---CC 14107 ||||||| || ||||| | | || | |||||||||||||| | ||||| || || || Sbjct 68 GCATCAAAGAAAAGAAGGTTATCACTTCGATGCCTTTGGTGGGACCTCACGAGCTGTCCC 127 Query 14108 GTGAGATGACCAAGGACATCCGTGAAGGTGAAGTGATCCTCGTGACCTCGGGCAGTGGCT 14167 | ||||||||| ||||||| ||||| ||||| || || || ||||||||| |||| Sbjct 128 G---CATGACCAAGAACATCCGCGAAGGCGAAGTCATTCTGGTCACCTCGGGCTCCGGCT 184 Query 14168 CAGGCAAGTCCACCTTTGTGCGCCAGAACACCTACAACCTGTTCCACAACGAGGGCATCC 14227 | ||||||||||| || || || ||||||||||||||| | ||||| | | | |||| Sbjct 185 CGGGCAAGTCCACGTTCGTCCGACAGAACACCTACAACGTCTTCCATGAGGCGACGATCC 244 Query 14228 CTGTGGGTGTCGCGATGCTGGAAGAAGCCGTTGAGGAAA-CCGTACAGGACATCGTTGGG 14286 | ||||| || |||||||| || ||| |||||||||||| |||||||||||||||| || Sbjct 245 CGGTGGGCGTTGCGATGCTTGAGGAATCCGTTGAGGAAACCCGTACAGGACATCGTAGGT 304 Query 14287 CTTCACATGGG 14297 || || || || Sbjct 305 CTCCATATCGG 315 >seq500082 Length=313 Score = 172 bits (190), Expect = 1e-38 Identities = 221/302 (73%), Gaps = 6/302 (2%) Strand=Plus/Minus Query 6068 GAGGAAGGAATCGAATGGCTCATGATCCACGGGGCCAACACAGCGGGCGTCGATAAGGTG 6127 || || || || ||||||||||||| |||||||||||||| || || ||||||||||| Sbjct 312 GAAGATGGTATTCAATGGCTCATGATTCACGGGGCCAACACTGCTGGGGTCGATAAGGTC 253 Query 6128 CCCTTCCCGGAACGTAAACAATGGGTCCTCGACCATGAAGAACTTATCCTCGCTTGCGCT 6187 || ||| |||| || |||||||| | ||| ||||| ||||||| |||||| Sbjct 252 CCTTTCGATCAACGCAAGCAATGGGTTCGTGACAATGAATCGACTATCCTCCGATGCGCT 193 Query 6188 GCTGATCCCCTTAACGTCACCGACTGGATGCAAATGGACTCCCCGTTCTGCTTCCTCGCT 6247 | || || || | |||||| |||||| |||||||| || ||||| ||| | || Sbjct 192 GAAGACCCGCTCACTCACACCGAGTGGATGGGGATGGACTCGCCCTTCTGTTTCTTGGCG 133 Query 6248 TTCTGCTTTGAGTGGGC---TGGCGTTAAAGCTGATGGCGCTGCACACGTTAGTGCCCTT 6304 |||||||| |||||||| || |||| || ||||| ||||||||| || || Sbjct 132 TTCTGCTTCGAGTGGGCCGGTGTCGTT--CGC-GATGGAGCTGCACACCGATCCGCTCTA 76 Query 6305 CCCATTGCGTTCGATGGTTCCTGTTCTGGCATCCAGCACTTTTCCGCGATGCTACGGGAT 6364 || || || || || || |||||| || |||||||| ||||| || ||||| ||||| Sbjct 75 CCAATCGCTTTTGACGGAAGCTGTTCGGGTATCCAGCATTTTTCTGCCATGCTCCGGGAC 16 Query 6365 GA 6366 || Sbjct 15 GA 14 >seq521066 Length=280 Score = 158 bits (174), Expect = 3e-34 Identities = 174/231 (75%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 21376 CATGGAAGCCAACAGCTACCGAGTGACGCTCTTTGAGTTGATCCGTCAGTTGGCCCTTGC 21435 ||||||||||||||| ||||| ||| | ||| |||| |||||||||| | || Sbjct 1 CATGGAAGCCAACAGTTACCGCACCACGTTGCACGAGCTGATTCGTCAGTTGGTGATCGC 60 Query 21436 AGGGTCCGGGCTGCTCTACCTGCCACCGCCTGACGCAAGTTCTTCCAGCTACAACCCGAT 21495 ||||| || ||||| ||||| || || ||||| | |||| || | ||| || Sbjct 61 TGGGTCTGGCCTGCTGTACCTTCCGCCTCCTGAGG---GTTCGACCCAAGGGAGCCCTAT 117 Query 21496 GAAGCTCTACACGTTGCACAACCACGTTGTCCAGCGCGATGCCTTCGGGACCGTTCTGCA 21555 ||||||||||||| ||||||||||||| ||||| || || ||||||||| ||| || || Sbjct 118 GAAGCTCTACACGCTGCACAACCACGTAGTCCAACGGGACTCCTTCGGGAACGTCCTACA 177 Query 21556 AATTGTGACCCTCGATAAGGTGGCCTTCGCGGCTCTCCCAGAGGACGTTCG 21606 || || || ||||| ||||||||||| ||||| || || || ||||| || Sbjct 178 GATCGTTACGCTCGACAAGGTGGCCTTTGCGGCCCTTCCTGAAGACGTGCG 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130734251316564