Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_028661.1
Length=41149
Score E
Sequences producing significant alignments: (Bits) Value
seq512931 432 1e-116
seq524349 242 1e-59
seq500082 172 1e-38
seq521066 158 3e-34
>seq512931
Length=538
Score = 432 bits (478), Expect = 1e-116
Identities = 420/532 (79%), Gaps = 24/532 (5%)
Strand=Plus/Plus
Query 39020 CCTGACCACTCCCCTTCTGTGAAGTCTGTCGGTATCACCGGTCAGT-TGACTGGTAGCCG 39078
||||||||| ||| || |||||||| || ||| | || || | || |||||||||||||
Sbjct 10 CCTGACCACAGCCCCTCGGTGAAGTCCGTGGGTGTTACTGG-CGGTATGACTGGTAGCCG 68
Query 39079 TGCTGACATCCTCATTGCGGATGACGTTGAGGTCCCGAACAACTCTGGCACACAGGCCGC 39138
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 69 TGCTGACATCCTCATTGCGGATGACGTTGAGGTCCCCGGCAACTCTGGCACACAGTCCGC 128
Query 39139 TCGTGATCACCTTGGCGAACTCGTTAAGGAATTCGATGCGATCCTGAAGCCGGGCGGAAC 39198
| |||||||||||||| || || |||||||||||||||||||||||||| | ||| ||
Sbjct 129 AAGGGATCACCTTGGCGAGCTGGTAAAGGAATTCGATGCGATCCTGAAGCCTGACGGTAC 188
Query 39199 GATCATCTATCTGGGCACCCCTCAGACCGAGATGACCCTCTACCGCGAGCTGGAAGGCCG 39258
||||||||| |||| ||||| |||||||| |||||||||||| | || || || | |||
Sbjct 189 GATCATCTACTTGGGAACCCCACAGACCGAAATGACCCTCTACAGGGAACTTGAGGACCG 248
Query 39259 TGGCTACGTCACTACGATCTGGCCTGCAAGATACCCTAAGGATCAAGCTGATCGTGACTC 39318
|||||| || ||||||||||||||| |||||||| |||| ||||| | ||| ||
Sbjct 249 CGGCTACTCGACGACGATCTGGCCTGCACGATACCCTCGGGATGTGGCTGACCTTGAGTC 308
Query 39319 CTA-TGGC---CCACG-------GCT---GGCT---CCTATGCTTGC-CAAGGACATGGA 39360
||| |||| ||| | ||| | || ||| | ||| |||||| ||||
Sbjct 309 CTACTGGCACGCCAAGGGCAAGCGCTCACGTCTGGACCTTACCATGCTCAAGGAGCTGGA 368
Query 39361 TGA--ACACGGTGCTGACTTCTGGGCTCCTACAGACCCTGTGCGATTCGATGACAAGGAC 39418
|| || | |||| |||||| |||||||||||| | ||||||||||| | |||
Sbjct 369 AGACGACGAGAAGCTG--TTCTGGAAGCCTACAGACCCTATTCGATTCGATGATGAAGAC 426
Query 39419 TTGCGTGAGCGGGAACTCTCCTACGGGAAGGGTGGCTTCGCCTTGCAGTTCATGCTCAAC 39478
|||||||||| |||||||| || || |||||||||||||| | |||||||||||||||
Sbjct 427 CTGCGTGAGCGCGAACTCTCATATGGCAAGGGTGGCTTCGCTCTACAGTTCATGCTCAAC 486
Query 39479 CCGAACCTCTCGGACATGGAGAAGTACCCTCTCAAGCTGCGTGACTTCATCG 39530
|||||||| ||||| ||||||||||| | ||||||||||| | ||||
Sbjct 487 CCGAACCTTAGCGACATCGAGAAGTACCCGTTGAAGCTGCGTGATTGGATCG 538
>seq524349
Length=315
Score = 242 bits (268), Expect = 1e-59
Identities = 242/311 (78%), Gaps = 7/311 (2%)
Strand=Plus/Plus
Query 13991 TGTGGAATGCCTCGCCGTTCGTACCTGATGGCGTGGTCTCCGCGAAGGCCCTCAAGGCTC 14050
||||||| ||| | || ||| |||||||| |||||||| |||||| ||| |||| |
Sbjct 8 TGTGGAACGCCCAGAAGTACGTCCCTGATGGTGTGGTCTCGGCGAAGTACCTTAAGGGCC 67
Query 14051 GCATCAAGGAGAAGAAAGCTGTCGCCTCGATGCCTTTGGTTGCCCCTCATGAACT---CC 14107
||||||| || ||||| | | || | |||||||||||||| | ||||| || || ||
Sbjct 68 GCATCAAAGAAAAGAAGGTTATCACTTCGATGCCTTTGGTGGGACCTCACGAGCTGTCCC 127
Query 14108 GTGAGATGACCAAGGACATCCGTGAAGGTGAAGTGATCCTCGTGACCTCGGGCAGTGGCT 14167
| ||||||||| ||||||| ||||| ||||| || || || ||||||||| ||||
Sbjct 128 G---CATGACCAAGAACATCCGCGAAGGCGAAGTCATTCTGGTCACCTCGGGCTCCGGCT 184
Query 14168 CAGGCAAGTCCACCTTTGTGCGCCAGAACACCTACAACCTGTTCCACAACGAGGGCATCC 14227
| ||||||||||| || || || ||||||||||||||| | ||||| | | | ||||
Sbjct 185 CGGGCAAGTCCACGTTCGTCCGACAGAACACCTACAACGTCTTCCATGAGGCGACGATCC 244
Query 14228 CTGTGGGTGTCGCGATGCTGGAAGAAGCCGTTGAGGAAA-CCGTACAGGACATCGTTGGG 14286
| ||||| || |||||||| || ||| |||||||||||| |||||||||||||||| ||
Sbjct 245 CGGTGGGCGTTGCGATGCTTGAGGAATCCGTTGAGGAAACCCGTACAGGACATCGTAGGT 304
Query 14287 CTTCACATGGG 14297
|| || || ||
Sbjct 305 CTCCATATCGG 315
>seq500082
Length=313
Score = 172 bits (190), Expect = 1e-38
Identities = 221/302 (73%), Gaps = 6/302 (2%)
Strand=Plus/Minus
Query 6068 GAGGAAGGAATCGAATGGCTCATGATCCACGGGGCCAACACAGCGGGCGTCGATAAGGTG 6127
|| || || || ||||||||||||| |||||||||||||| || || |||||||||||
Sbjct 312 GAAGATGGTATTCAATGGCTCATGATTCACGGGGCCAACACTGCTGGGGTCGATAAGGTC 253
Query 6128 CCCTTCCCGGAACGTAAACAATGGGTCCTCGACCATGAAGAACTTATCCTCGCTTGCGCT 6187
|| ||| |||| || |||||||| | ||| ||||| ||||||| ||||||
Sbjct 252 CCTTTCGATCAACGCAAGCAATGGGTTCGTGACAATGAATCGACTATCCTCCGATGCGCT 193
Query 6188 GCTGATCCCCTTAACGTCACCGACTGGATGCAAATGGACTCCCCGTTCTGCTTCCTCGCT 6247
| || || || | |||||| |||||| |||||||| || ||||| ||| | ||
Sbjct 192 GAAGACCCGCTCACTCACACCGAGTGGATGGGGATGGACTCGCCCTTCTGTTTCTTGGCG 133
Query 6248 TTCTGCTTTGAGTGGGC---TGGCGTTAAAGCTGATGGCGCTGCACACGTTAGTGCCCTT 6304
|||||||| |||||||| || |||| || ||||| ||||||||| || ||
Sbjct 132 TTCTGCTTCGAGTGGGCCGGTGTCGTT--CGC-GATGGAGCTGCACACCGATCCGCTCTA 76
Query 6305 CCCATTGCGTTCGATGGTTCCTGTTCTGGCATCCAGCACTTTTCCGCGATGCTACGGGAT 6364
|| || || || || || |||||| || |||||||| ||||| || ||||| |||||
Sbjct 75 CCAATCGCTTTTGACGGAAGCTGTTCGGGTATCCAGCATTTTTCTGCCATGCTCCGGGAC 16
Query 6365 GA 6366
||
Sbjct 15 GA 14
>seq521066
Length=280
Score = 158 bits (174), Expect = 3e-34
Identities = 174/231 (75%), Gaps = 3/231 (1%)
Strand=Plus/Plus
Query 21376 CATGGAAGCCAACAGCTACCGAGTGACGCTCTTTGAGTTGATCCGTCAGTTGGCCCTTGC 21435
||||||||||||||| ||||| ||| | ||| |||| |||||||||| | ||
Sbjct 1 CATGGAAGCCAACAGTTACCGCACCACGTTGCACGAGCTGATTCGTCAGTTGGTGATCGC 60
Query 21436 AGGGTCCGGGCTGCTCTACCTGCCACCGCCTGACGCAAGTTCTTCCAGCTACAACCCGAT 21495
||||| || ||||| ||||| || || ||||| | |||| || | ||| ||
Sbjct 61 TGGGTCTGGCCTGCTGTACCTTCCGCCTCCTGAGG---GTTCGACCCAAGGGAGCCCTAT 117
Query 21496 GAAGCTCTACACGTTGCACAACCACGTTGTCCAGCGCGATGCCTTCGGGACCGTTCTGCA 21555
||||||||||||| ||||||||||||| ||||| || || ||||||||| ||| || ||
Sbjct 118 GAAGCTCTACACGCTGCACAACCACGTAGTCCAACGGGACTCCTTCGGGAACGTCCTACA 177
Query 21556 AATTGTGACCCTCGATAAGGTGGCCTTCGCGGCTCTCCCAGAGGACGTTCG 21606
|| || || ||||| ||||||||||| ||||| || || || ||||| ||
Sbjct 178 GATCGTTACGCTCGACAAGGTGGCCTTTGCGGCCCTTCCTGAAGACGTGCG 228
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 130734251316564
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |