Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_028683.1 Length=177643 Score E Sequences producing significant alignments: (Bits) Value seq449735 219 5e-52 seq497460 104 3e-17 seq509673 100 3e-16 >seq449735 Length=3187 Score = 219 bits (242), Expect = 5e-52 Identities = 409/595 (69%), Gaps = 17/595 (3%) Strand=Plus/Minus Query 147603 GAACAGTTCGAGAGCCTTAATACGTTTCTTACGAACAGTTGGGTCACGTTCTAAGGTCTG 147662 ||||||||| | ||| ||||| ||||| ||||||| | | ||| |||| | | Sbjct 612 GAACAGTTCAATAGCTTTAATGCGTTTTTTACGAATTGATTCGTCTTGTTCGTATTTTAC 553 Query 147663 ATAAAGATTACGGAACGCTTCTGGGTCTTTAAAGTAATCTTCATAAAGCAGTCCACCACA 147722 |||||| ||| | ||| |||||| ||| | | || ||||| | | |||| Sbjct 552 ATAAAGCGCGTCAAACTCGTCTTGGTCTTCAAAAAATGCATCGTAAAG--GCCTGGCACA 495 Query 147723 AACTTCAG---GGCTGAATAATGTGATGTAGTCATTCTTAATAAGACGTTCTAACATCAG 147779 |||| |||| || || || |||||||| | ||||| | ||| |||| || Sbjct 494 ----TCAGAGGGGCTAAACAAGGTAATGTAGTCGTCTTTAATTAAACGCGAGTACATTAG 439 Query 147780 GTCATTAATCTGGACGCCATAATCTAAGTGACGAATACGGTTCTCGTCTACACCTTTATT 147839 | ||||| ||| ||||| |||||||| ||||| | ||||| || || || || || Sbjct 438 TTTATTAAACTGTACGCCGTAATCTAAATGACGCACGCGGTTGTCATCAACCCCGCGGTT 379 Query 147840 GTTTTTCAGAACGAGAAGGTTTTCGACTTCTAAATGCCAAATTGGATAGTACAATGTTGC 147899 ||||| || || | |||||||| |||||||||||||||| || ||| |||| ||||| Sbjct 378 ATTTTTAAGTACTAACAGGTTTTCTACTTCTAAATGCCAAAGCGGGTAGAACAAGGTTGC 319 Query 147900 TGCACCACCACGTACACCACCTTGGGAACATGATTTAACAGAAGCTTGAATAGT-TTTCC 147958 ||| || ||||||||||| ||||| ||||| |||||| | | ||||| ||| || Sbjct 318 TGCGCCGCCACGTACACCGCCTTGCGAACAGCTTTTAACCGCTGTTTGAA-AGTGCTTAT 260 Query 147959 AGAATGGAATCACGCCTGTGTGCTTAACTTCACCATGTCCAATCTTAGAACCTTCTGCAC 148018 | || ||||| || || || | |||| |||| | ||| | ||| ||||| Sbjct 259 AAAAAGGAATACAACCCGTATGGTACGCTTCGCCATTGCGAATGTGGCTACCCAGTGCAC 200 Query 148019 GAATCATACCAGCGTTAACACCAATACCAGCTCGTTTACTGATGTACTTAATGATTGAAG 148078 |||| ||| ||||||| ||||| || || |||| | ||| |||| |||| || Sbjct 199 GAATGCGACCTGCGTTAATGCCAATGCCGGCACGTTGCGATACGTATTTAACAATTGCAG 140 Query 148079 CATTTGTGGTATTAATCGAATCCAGTGAATCACCACCTTCAATAACAACACAACTCGAG- 148137 |||| ||||| ||||| || || |||| || || | ||||| |||| Sbjct 139 ACGAGGTGGCGTTAATTGAATCAAGGCTGTCGCCACACTCTATTAATACACA---CGAGC 83 Query 148138 --AATTGACGAGTCGGAGTACGAACACCTGCCATAATTGGAGTTGGCAGTGAAAT 148190 || || || || || ||||||||||||||||||||||| || || |||||||| Sbjct 82 TAAACTGGCGTGTTGGCGTACGAACACCTGCCATAATTGGCGTAGGTAGTGAAAT 28 >seq497460 Length=577 Score = 104 bits (114), Expect = 3e-17 Identities = 208/303 (69%), Gaps = 8/303 (3%) Strand=Plus/Minus Query 139192 GTTCCATTTTTAAAGCCAACGCACATAGGCAGGCCTGAAGCAATTTCACGGTGTGTCTGA 139251 || || |||||||||||||| ||||| || || || ||||||||||| || || Sbjct 549 GTGCCGTTTTTAAAGCCAACAGGCATAGACAAACCACTGGCCATTTCACGGTGAGTTTGT 490 Query 139252 CTCTCGGTTGTACGAGCGCCGATTGC-GACCCAAGAGAAA-ATACCTGTAAGATACTTAA 139309 || || ||||| || || || || |||| || ||| | | | || || | Sbjct 489 GATTCAGTAGTACGCGCACCAATAGCAGACC--AGCTAAACAGATCGCCAATGTATTGTG 432 Query 139310 TCGTGAATGGGTCCAACACTTCAGTCGCTAGTGGAAGGCCTAAGCTTAATAGTTCTAAGC 139369 | | ||| ||||| |||||||||| | || | ||||| | | | ||| Sbjct 431 GACTAATTGGATCCAATGCTTCAGTCGCGATAGGTAAACCTAACTCTGAAATCCATAATA 372 Query 139370 AAAGTTCGCGAGCCATTTCGAGCCCACGGTTT--ATGTCAAATGAGCCATTCAATTCTGG 139427 | ||||| || || ||| || || ||||| || ||||||||| ||| || | || Sbjct 371 ATAGTTCACGCGCTTTTTTAAGGCC--GGTTTCGATATCAAATGAGTCATCCATATGAGG 314 Query 139428 GTCGTTAATGAAACCTTTCCAACCTACAGTTGTTCTTGGTTTCTCAAAATAAACACGCAT 139487 ||||||||| | ||||||||||| || || || | |||||| ||||||||||||||||| Sbjct 313 GTCGTTAATTAGCCCTTTCCAACCCACTGTAGTACGTGGTTTTTCAAAATAAACACGCAT 254 Query 139488 AAC 139490 ||| Sbjct 253 AAC 251 >seq509673 Length=441 Score = 100 bits (110), Expect = 3e-16 Identities = 136/187 (73%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 147783 ATTAATCTGGACGCCATAATCTAAGTGACGAATACGGTTCTCGTCTACACCTTTATTGTT 147842 ||| | ||| ||||| ||||| | ||||| | |||||| || || || || || || Sbjct 221 ATTTAACTGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTATT 280 Query 147843 TTTCAGAACGAGAAGGTTTTCGACTTCTAAATGCCAAATTGGATAGTACAATGTTGCTGC 147902 |||||| || | | || |||||||||||||| | ||| || |||| || ||||| Sbjct 281 TTTCAGTACCAATAATGACTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCGCTGC 340 Query 147903 ACCACCACGTACACCACCTTGGGAACATGATTTAACAGAAGCTT-GAATAGTTTTCCAGA 147961 ||| ||||| || || ||||| || || ||||||||| || || ||| || ||| ||| Sbjct 341 ACCGCCACGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAG-TTTATAGA 399 Query 147962 ATGGAAT 147968 |||| || Sbjct 400 ATGGGAT 406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564596370731760