Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_028686.1 Length=166313 Score E Sequences producing significant alignments: (Bits) Value seq449735 251 8e-62 seq506238 98.7 1e-15 seq450559 96.9 4e-15 seq250551 95.1 1e-14 seq458811 86.0 7e-12 >seq449735 Length=3187 Score = 251 bits (278), Expect = 8e-62 Identities = 338/467 (72%), Gaps = 4/467 (1%) Strand=Plus/Minus Query 128588 GGGACTGAACAATGTGATGTAATCATTCTTAATCAAACGTTCAATCATCAGGTTATTAAT 128647 ||| || ||||| || ||||| || | ||||| ||||| ||| || ||||||| Sbjct 489 GGGGCTAAACAAGGTAATGTAGTCGTCTTTAATTAAACGCGAGTACATTAGTTTATTAAA 430 Query 128648 CTGAACACCATAATCTAAATGACGAATACGGTTTTCATCTACACCTTTGTTGTTCTTAAG 128707 ||| || || |||||||||||||| | ||||| ||||| || || ||| || ||||| Sbjct 429 CTGTACGCCGTAATCTAAATGACGCACGCGGTTGTCATCAACCCCGCGGTTATTTTTAAG 370 Query 128708 TACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAGTGTCGCCGCGCCACC 128767 ||| | |||||||| ||||| || ||||| | || ||| ||| || || ||||| || Sbjct 369 TACTAACAGGTTTTCTACTTCTAAATGCCAAAGCGGGTAGAACAAGGTTGCTGCGCCGCC 310 Query 128768 ACGGACTCCGCCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTGCTTCCAGAAAGGAAT 128827 ||| || |||||||| || ||| |||||| |||||||| |||||||| | |||||||| Sbjct 309 ACGTACACCGCCTTGCGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTATAAAAAGGAAT 250 Query 128828 AACTCCAGTATGTTTGACTTCACCGAATCCAATTTTTGAACCTTCTGCACGAATCATACC 128887 | || ||||| | |||| || | ||| | ||| ||||||||| ||| Sbjct 249 ACAACCCGTATGGTACGCTTCGCCATTGCGAATGTGGCTACCCAGTGCACGAATGCGACC 190 Query 128888 TGCATTAATACCAATACCTGCACGCTTACTGAT--GTATTTTGTAATTGACGCAGCAGCT 128945 ||| ||||| ||||| || ||||| || | ||| |||||| ||||| | | | Sbjct 189 TGCGTTAATGCCAATGCCGGCACG-TTGC-GATACGTATTTAACAATTGCAGACGAGGTG 132 Query 128946 TCGTTAATTGAATTAAGACTATCACCGCCTTCAATAACCACGCATGAACTAAACTGACGT 129005 |||||||||||| ||| || || || | || || | || || || |||||||| ||| Sbjct 131 GCGTTAATTGAATCAAGGCTGTCGCCACACTCTATTAATACACACGAGCTAAACTGGCGT 72 Query 129006 GTCGGAGTACGAACACCAGACATAATTGGAGTTGGCAATGAAATCTT 129052 || || ||||||||||| | ||||||||| || || | |||||| || Sbjct 71 GTTGGCGTACGAACACCTGCCATAATTGGCGTAGGTAGTGAAATTTT 25 >seq506238 Length=275 Score = 98.7 bits (108), Expect = 1e-15 Identities = 132/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 48802 ATTATAGTGCCTCTGTGAAAGTACGAGCGATAACGTCGCGCTGCTGTTCCGACGTCAGGG 48861 |||| | || ||||| || ||||| | | ||||| |||| ||||| | || | | Sbjct 38 ATTACAATGTTTCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATG 97 Query 48862 AGTTGAAGCGTACCGCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGAT 48921 |||| || || || ||||| || || |||||||| || | || ||||||||||| || | Sbjct 98 AGTTAAAACGCACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGT 157 Query 48922 GCTCAACCGCGTCCAGCAGAGTTTCACGACGCAGCACGTTAACGTTCAGGTGCTGACCGC 48981 | | ||| || || || ||||||||||| | ||| || ||||| | || ||||| | Sbjct 158 GTTTAACAGCATCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTTGACCAC 217 Query 48982 CTTC 48985 |||| Sbjct 218 CTTC 221 >seq450559 Length=633 Score = 96.9 bits (106), Expect = 4e-15 Identities = 234/350 (67%), Gaps = 6/350 (2%) Strand=Plus/Minus Query 28842 TCCCATGACGTGCCCATACCAAATGTGATAGTCACAAACGGGGTTTGGCCATTTGAGCTG 28901 ||||| ||| ||| | |||||| | || |||||||| ||||||||||| | | | Sbjct 414 TCCCACGACACGCCTAAACCAAAACCAAAGGTAACAAACGGTGTTTGGCCATTAGCGGTA 355 Query 28902 AACAAAGTATTCACTTCATATTCATATGCCTGGAAAGCATCA-AATACATCTTTTTCTGT 28960 ||| |||||||||||||||||| || |||||| || ||| | || |||||||| || Sbjct 354 TGCAAGGTATTCACTTCATATTCAAGTGACTGGAATGCGTCATGACAC-TCTTTTTCGGT 296 Query 28961 TTTTGAAATAGCATAATCTTTTACTAATGCTACTTGATATTTGCGTGCATCACGTACATG 29020 || | || |||||| ||| ||| ||| ||||| |||| || | | | || Sbjct 295 TTGCGTCATGGCATAACCTTCTACGTCTGCCACTTGCCATTTTTTAGCGACGCTAAGGTG 236 Query 29021 TTTAGCGAATGTCTTCTCCACATAAGGAGCCAATACTAAATCG--ACGTTAGCAAACGTA 29078 || | | | | | |||| | ||| || ||| ||| ||| | || ||| Sbjct 235 CTTTTGGTAACTGATTTGCACAAACTCAGCTAACACTTCGTCGATACGGT--TAATCGTG 178 Query 29079 GTTCCACCATACTGGTGAGATGCTACTTGCGCAGTGATTTGCGCCATGATAGCGGTAGCT 29138 || |||||||| || ||||| || ||| | ||||||||| | | ||| || || Sbjct 177 GTACCACCATAAATATGGCTCGCTACCTGAGCAATAATTTGCGCCGTAACAGCAGTGGCA 118 Query 29139 ACTCCAATACTCTTAGGAGTTTCAATTTGAGCGTTACCAAGTTTAAAGCC 29188 | ||| |||||| | ||| |||| ||| ||||| | |||||| || Sbjct 117 GTTGATATAGACTTAGGCGGTTCTATTTCAGCATTACCCATTTTAAAACC 68 >seq250551 Length=853 Score = 95.1 bits (104), Expect = 1e-14 Identities = 193/285 (68%), Gaps = 4/285 (1%) Strand=Plus/Minus Query 27882 TAGTCCCATACAGCTTCAAGACCTTCAAGGTTACGCTTCATGTCAGGCAGTTCAACATAA 27941 || ||||| || ||| || |||||| || ||| ||||| || ||| | ||| Sbjct 570 TAATCCCAAACGTTTTCGAGCGCTTCAATATTGTGCTGCATGTTGGGATATTCGCCGTAA 511 Query 27942 GAAATATGACCACCTTTAGCAATGGAATGATATGGTGCTTCACGGTCAATCTTTTCAAAA 28001 ||||| || || || || |||| |||| ||| |||| |||||||| |||||| Sbjct 510 CAAATAAACCCGCCATTGGCGATGGCTGGATAAGGTTGTTCAAAATCAATCTTATCAAAA 451 Query 28002 GGCGACAGGTTTTCTTCTACTGACACATGGAAGCTATTAGTGTACCAGCCTTTATCAGTT 28061 || | || | ||| || | ||||||||||| ||||| ||||||| || || Sbjct 450 GGATTTACTTTCTTTTCAACATCTAAGTGGAAGCTATTGGTGTAATAGCCTTTGTCGGTC 391 Query 28062 ACGCCCTTAACATCGCCAAACTTAGCTTGG--TCAATCTTGCAGAAACGATAGCACAAAC 28119 || || ||| ||||||||| | ||| || | || ||| ||||| ||| || Sbjct 390 ACACCTGCCACAACGCCAAACT--GGGTGGTATCTAGCTGGCAAAAACGGCTGCATAAGT 333 Query 28120 TTTCAGCCGGAGTAGAATACAAACTAAAGGCATAACCGGTTTCTT 28164 ||||| || ||| || ||||||||| ||||||| ||||||| Sbjct 332 TTTCACTTGGGGTACTGTATAAACTAAAGCCATAACCTGTTTCTT 288 >seq458811 Length=383 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57434 AAATGGTCGAGGCAGAAGGATTCGAACCTTCGACCTGCGGATTAGAAGTCCGCTGCTCTA 57493 ||||||| | |||||||||||||||||||||||| || ||||||| || ||||||| Sbjct 45 AAATGGTGCACCCAGAAGGATTCGAACCTTCGACCTACGCCTTAGAAGGGCGTTGCTCTA 104 Query 57494 TCCAACTGAGCTATG 57508 |||| |||||||||| Sbjct 105 TCCAGCTGAGCTATG 119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 528578528238160