Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_028686.1
Length=166313
Score E
Sequences producing significant alignments: (Bits) Value
seq449735 251 8e-62
seq506238 98.7 1e-15
seq450559 96.9 4e-15
seq250551 95.1 1e-14
seq458811 86.0 7e-12
>seq449735
Length=3187
Score = 251 bits (278), Expect = 8e-62
Identities = 338/467 (72%), Gaps = 4/467 (1%)
Strand=Plus/Minus
Query 128588 GGGACTGAACAATGTGATGTAATCATTCTTAATCAAACGTTCAATCATCAGGTTATTAAT 128647
||| || ||||| || ||||| || | ||||| ||||| ||| || |||||||
Sbjct 489 GGGGCTAAACAAGGTAATGTAGTCGTCTTTAATTAAACGCGAGTACATTAGTTTATTAAA 430
Query 128648 CTGAACACCATAATCTAAATGACGAATACGGTTTTCATCTACACCTTTGTTGTTCTTAAG 128707
||| || || |||||||||||||| | ||||| ||||| || || ||| || |||||
Sbjct 429 CTGTACGCCGTAATCTAAATGACGCACGCGGTTGTCATCAACCCCGCGGTTATTTTTAAG 370
Query 128708 TACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAGTGTCGCCGCGCCACC 128767
||| | |||||||| ||||| || ||||| | || ||| ||| || || ||||| ||
Sbjct 369 TACTAACAGGTTTTCTACTTCTAAATGCCAAAGCGGGTAGAACAAGGTTGCTGCGCCGCC 310
Query 128768 ACGGACTCCGCCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTGCTTCCAGAAAGGAAT 128827
||| || |||||||| || ||| |||||| |||||||| |||||||| | ||||||||
Sbjct 309 ACGTACACCGCCTTGCGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTATAAAAAGGAAT 250
Query 128828 AACTCCAGTATGTTTGACTTCACCGAATCCAATTTTTGAACCTTCTGCACGAATCATACC 128887
| || ||||| | |||| || | ||| | ||| ||||||||| |||
Sbjct 249 ACAACCCGTATGGTACGCTTCGCCATTGCGAATGTGGCTACCCAGTGCACGAATGCGACC 190
Query 128888 TGCATTAATACCAATACCTGCACGCTTACTGAT--GTATTTTGTAATTGACGCAGCAGCT 128945
||| ||||| ||||| || ||||| || | ||| |||||| ||||| | | |
Sbjct 189 TGCGTTAATGCCAATGCCGGCACG-TTGC-GATACGTATTTAACAATTGCAGACGAGGTG 132
Query 128946 TCGTTAATTGAATTAAGACTATCACCGCCTTCAATAACCACGCATGAACTAAACTGACGT 129005
|||||||||||| ||| || || || | || || | || || || |||||||| |||
Sbjct 131 GCGTTAATTGAATCAAGGCTGTCGCCACACTCTATTAATACACACGAGCTAAACTGGCGT 72
Query 129006 GTCGGAGTACGAACACCAGACATAATTGGAGTTGGCAATGAAATCTT 129052
|| || ||||||||||| | ||||||||| || || | |||||| ||
Sbjct 71 GTTGGCGTACGAACACCTGCCATAATTGGCGTAGGTAGTGAAATTTT 25
>seq506238
Length=275
Score = 98.7 bits (108), Expect = 1e-15
Identities = 132/184 (72%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 48802 ATTATAGTGCCTCTGTGAAAGTACGAGCGATAACGTCGCGCTGCTGTTCCGACGTCAGGG 48861
|||| | || ||||| || ||||| | | ||||| |||| ||||| | || | |
Sbjct 38 ATTACAATGTTTCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATG 97
Query 48862 AGTTGAAGCGTACCGCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGAT 48921
|||| || || || ||||| || || |||||||| || | || ||||||||||| || |
Sbjct 98 AGTTAAAACGCACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGT 157
Query 48922 GCTCAACCGCGTCCAGCAGAGTTTCACGACGCAGCACGTTAACGTTCAGGTGCTGACCGC 48981
| | ||| || || || ||||||||||| | ||| || ||||| | || ||||| |
Sbjct 158 GTTTAACAGCATCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTTGACCAC 217
Query 48982 CTTC 48985
||||
Sbjct 218 CTTC 221
>seq450559
Length=633
Score = 96.9 bits (106), Expect = 4e-15
Identities = 234/350 (67%), Gaps = 6/350 (2%)
Strand=Plus/Minus
Query 28842 TCCCATGACGTGCCCATACCAAATGTGATAGTCACAAACGGGGTTTGGCCATTTGAGCTG 28901
||||| ||| ||| | |||||| | || |||||||| ||||||||||| | | |
Sbjct 414 TCCCACGACACGCCTAAACCAAAACCAAAGGTAACAAACGGTGTTTGGCCATTAGCGGTA 355
Query 28902 AACAAAGTATTCACTTCATATTCATATGCCTGGAAAGCATCA-AATACATCTTTTTCTGT 28960
||| |||||||||||||||||| || |||||| || ||| | || |||||||| ||
Sbjct 354 TGCAAGGTATTCACTTCATATTCAAGTGACTGGAATGCGTCATGACAC-TCTTTTTCGGT 296
Query 28961 TTTTGAAATAGCATAATCTTTTACTAATGCTACTTGATATTTGCGTGCATCACGTACATG 29020
|| | || |||||| ||| ||| ||| ||||| |||| || | | | ||
Sbjct 295 TTGCGTCATGGCATAACCTTCTACGTCTGCCACTTGCCATTTTTTAGCGACGCTAAGGTG 236
Query 29021 TTTAGCGAATGTCTTCTCCACATAAGGAGCCAATACTAAATCG--ACGTTAGCAAACGTA 29078
|| | | | | | |||| | ||| || ||| ||| ||| | || |||
Sbjct 235 CTTTTGGTAACTGATTTGCACAAACTCAGCTAACACTTCGTCGATACGGT--TAATCGTG 178
Query 29079 GTTCCACCATACTGGTGAGATGCTACTTGCGCAGTGATTTGCGCCATGATAGCGGTAGCT 29138
|| |||||||| || ||||| || ||| | ||||||||| | | ||| || ||
Sbjct 177 GTACCACCATAAATATGGCTCGCTACCTGAGCAATAATTTGCGCCGTAACAGCAGTGGCA 118
Query 29139 ACTCCAATACTCTTAGGAGTTTCAATTTGAGCGTTACCAAGTTTAAAGCC 29188
| ||| |||||| | ||| |||| ||| ||||| | |||||| ||
Sbjct 117 GTTGATATAGACTTAGGCGGTTCTATTTCAGCATTACCCATTTTAAAACC 68
>seq250551
Length=853
Score = 95.1 bits (104), Expect = 1e-14
Identities = 193/285 (68%), Gaps = 4/285 (1%)
Strand=Plus/Minus
Query 27882 TAGTCCCATACAGCTTCAAGACCTTCAAGGTTACGCTTCATGTCAGGCAGTTCAACATAA 27941
|| ||||| || ||| || |||||| || ||| ||||| || ||| | |||
Sbjct 570 TAATCCCAAACGTTTTCGAGCGCTTCAATATTGTGCTGCATGTTGGGATATTCGCCGTAA 511
Query 27942 GAAATATGACCACCTTTAGCAATGGAATGATATGGTGCTTCACGGTCAATCTTTTCAAAA 28001
||||| || || || || |||| |||| ||| |||| |||||||| ||||||
Sbjct 510 CAAATAAACCCGCCATTGGCGATGGCTGGATAAGGTTGTTCAAAATCAATCTTATCAAAA 451
Query 28002 GGCGACAGGTTTTCTTCTACTGACACATGGAAGCTATTAGTGTACCAGCCTTTATCAGTT 28061
|| | || | ||| || | ||||||||||| ||||| ||||||| || ||
Sbjct 450 GGATTTACTTTCTTTTCAACATCTAAGTGGAAGCTATTGGTGTAATAGCCTTTGTCGGTC 391
Query 28062 ACGCCCTTAACATCGCCAAACTTAGCTTGG--TCAATCTTGCAGAAACGATAGCACAAAC 28119
|| || ||| ||||||||| | ||| || | || ||| ||||| ||| ||
Sbjct 390 ACACCTGCCACAACGCCAAACT--GGGTGGTATCTAGCTGGCAAAAACGGCTGCATAAGT 333
Query 28120 TTTCAGCCGGAGTAGAATACAAACTAAAGGCATAACCGGTTTCTT 28164
||||| || ||| || ||||||||| ||||||| |||||||
Sbjct 332 TTTCACTTGGGGTACTGTATAAACTAAAGCCATAACCTGTTTCTT 288
>seq458811
Length=383
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 57434 AAATGGTCGAGGCAGAAGGATTCGAACCTTCGACCTGCGGATTAGAAGTCCGCTGCTCTA 57493
||||||| | |||||||||||||||||||||||| || ||||||| || |||||||
Sbjct 45 AAATGGTGCACCCAGAAGGATTCGAACCTTCGACCTACGCCTTAGAAGGGCGTTGCTCTA 104
Query 57494 TCCAACTGAGCTATG 57508
|||| ||||||||||
Sbjct 105 TCCAGCTGAGCTATG 119
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 528578528238160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |