Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_028696.2 Length=41338 Score E Sequences producing significant alignments: (Bits) Value seq315065 205 2e-48 seq512503 132 1e-26 seq259072 120 8e-23 seq501738 116 1e-21 seq508319 87.8 5e-13 seq477953 84.2 6e-12 >seq315065 Length=1253 Score = 205 bits (226), Expect = 2e-48 Identities = 342/491 (70%), Gaps = 10/491 (2%) Strand=Plus/Minus Query 39483 GCTGTAATATCCAACGATATAGTCCGTTATTGCGTG---AGCTGCATCGCTGAAGCTTAC 39539 ||||||||| |||| |||||| | || | | || |||| || | || || Sbjct 1224 GCTGTAATAGCCAATGATATAATTGGTCACATCTTGTTTAGCTTCAACA---AAACTCTT 1168 Query 39540 ATAGCCCGTCGCCGGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCT 39599 |||||| || ||||||||||| | || | ||||||||| || ||||||||||| Sbjct 1167 ATAGCCTTGCGTTGGCACCCATTCCGTTTTTAAACTCCTGAAAAATCGCTCCATTGGCGC 1108 Query 39600 GTTATCCCAGCAGTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAA 39659 |||||||||||||| || || |||||||| || || | || || | ||||| || Sbjct 1107 ATTATCCCAGCAGTTACCTCGGCGACTCATGCTTTGTGTAATTTTATAGCGCCACA--AA 1050 Query 39660 C--TGCCGGAACTGCCTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCCG 39717 | || ||| ||| | ||||||||||| || ||||| || ||| ||||||| || Sbjct 1049 CGTTGGCGGTACTTCAAACTCGTATAATGGCTACCTTGGTCTGAGTGAAACATCAATCCA 990 Query 39718 ACGGGCTTACCACGGGTTTCCCATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGTCC 39777 ||| | || | | |||| | |||| || || ||||| | || | | | || Sbjct 989 CTTGGCCTGCCTCTGCTTTCATAAGCCAACTCAAGCGCTTTTAGCGTTAAGTTAGTATCT 930 Query 39778 GGCGAGAACGACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCG 39837 ||||| |||||||| ||||| || || ||| | || || | || | ||| || || Sbjct 929 GGCGACAACGACATTGCCCAACCAACGACTTTGCGCGCAAATAAATCAATAACGACCGCT 870 Query 39838 AGGTACGCCCAGCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTT 39897 | || |||||||| ||||| ||||| ||||| |||||||||||||||||||| ||| Sbjct 869 AAATAAGCCCAGCGATTACCTGTCCAAATATACGTCACATCACCGCACCACACAGTATTC 810 Query 39898 GGCTCGGTCACGGCGAACTGCCGTTCAAGGTAGTTAGGGATAGCAACATGTTCATGACCA 39957 || || || | ||||||| || || | || ||||| ||| ||| |||| |||| Sbjct 809 GGTTCAACAACATCAAACTGCCTATCTAGCAAATTTGGGATTTCAAAATGCTCATTACCA 750 Query 39958 CCACGTTTATA 39968 ||||||||||| Sbjct 749 CCACGTTTATA 739 Score = 205 bits (226), Expect = 2e-48 Identities = 342/491 (70%), Gaps = 10/491 (2%) Strand=Plus/Minus Query 16858 GCTGTAATATCCAACGATATAGTCCGTTATTGCGTG---AGCTGCATCGCTGAAGCTTAC 16914 ||||||||| |||| |||||| | || | | || |||| || | || || Sbjct 1224 GCTGTAATAGCCAATGATATAATTGGTCACATCTTGTTTAGCTTCAACA---AAACTCTT 1168 Query 16915 ATAGCCCGTCGCCGGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCT 16974 |||||| || ||||||||||| | || | ||||||||| || ||||||||||| Sbjct 1167 ATAGCCTTGCGTTGGCACCCATTCCGTTTTTAAACTCCTGAAAAATCGCTCCATTGGCGC 1108 Query 16975 GTTATCCCAGCAGTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAA 17034 |||||||||||||| || || |||||||| || || | || || | ||||| || Sbjct 1107 ATTATCCCAGCAGTTACCTCGGCGACTCATGCTTTGTGTAATTTTATAGCGCCACA--AA 1050 Query 17035 C--TGCCGGAACTGCCTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCCG 17092 | || ||| ||| | ||||||||||| || ||||| || ||| ||||||| || Sbjct 1049 CGTTGGCGGTACTTCAAACTCGTATAATGGCTACCTTGGTCTGAGTGAAACATCAATCCA 990 Query 17093 ACGGGCTTACCACGGGTTTCCCATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGTCC 17152 ||| | || | | |||| | |||| || || ||||| | || | | | || Sbjct 989 CTTGGCCTGCCTCTGCTTTCATAAGCCAACTCAAGCGCTTTTAGCGTTAAGTTAGTATCT 930 Query 17153 GGCGAGAACGACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCG 17212 ||||| |||||||| ||||| || || ||| | || || | || | ||| || || Sbjct 929 GGCGACAACGACATTGCCCAACCAACGACTTTGCGCGCAAATAAATCAATAACGACCGCT 870 Query 17213 AGGTACGCCCAGCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTT 17272 | || |||||||| ||||| ||||| ||||| |||||||||||||||||||| ||| Sbjct 869 AAATAAGCCCAGCGATTACCTGTCCAAATATACGTCACATCACCGCACCACACAGTATTC 810 Query 17273 GGCTCGGTCACGGCGAACTGCCGTTCAAGGTAGTTAGGGATAGCAACATGTTCATGACCA 17332 || || || | ||||||| || || | || ||||| ||| ||| |||| |||| Sbjct 809 GGTTCAACAACATCAAACTGCCTATCTAGCAAATTTGGGATTTCAAAATGCTCATTACCA 750 Query 17333 CCACGTTTATA 17343 ||||||||||| Sbjct 749 CCACGTTTATA 739 Score = 150 bits (166), Expect = 5e-32 Identities = 126/153 (82%), Gaps = 6/153 (4%) Strand=Plus/Minus Query 40246 TTCCCGATTATCGAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTTTTTTA 40305 ||| |||||| |||||| ||||||||||||| ||||||||||| |||||||||||||||| Sbjct 456 TTCTCGATTAACGAGAATTGTTCAGGGAGTCGGACATCAAGAGAGCGGTAGCCTTTTTTA 397 Query 40306 ATATTTCATTTTCCATTTCAATACGTTGTA---GCTTTTTCCTGAGCTCACGGATTTCAA 40362 |||| || ||||| | |||||| ||||||| ||||||| || ||||||||||||| Sbjct 396 ATATATCCTTTTCTAATTCAATGCGTTGTATTTGCTTTTTA---AGTTCACGGATTTCAA 340 Query 40363 TTTGTTCCGGGGTAATGGGGGAGGCTTTTGGTG 40395 ||||||| || || || || || || ||||| Sbjct 339 TTTGTTCGGGCGTCATTGGTGAAGCAGCTGGTG 307 Score = 150 bits (166), Expect = 5e-32 Identities = 126/153 (82%), Gaps = 6/153 (4%) Strand=Plus/Minus Query 17621 TTCCCGATTATCGAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTTTTTTA 17680 ||| |||||| |||||| ||||||||||||| ||||||||||| |||||||||||||||| Sbjct 456 TTCTCGATTAACGAGAATTGTTCAGGGAGTCGGACATCAAGAGAGCGGTAGCCTTTTTTA 397 Query 17681 ATATTTCATTTTCCATTTCAATACGTTGTA---GCTTTTTCCTGAGCTCACGGATTTCAA 17737 |||| || ||||| | |||||| ||||||| ||||||| || ||||||||||||| Sbjct 396 ATATATCCTTTTCTAATTCAATGCGTTGTATTTGCTTTTTA---AGTTCACGGATTTCAA 340 Query 17738 TTTGTTCCGGGGTAATGGGGGAGGCTTTTGGTG 17770 ||||||| || || || || || || ||||| Sbjct 339 TTTGTTCGGGCGTCATTGGTGAAGCAGCTGGTG 307 >seq512503 Length=416 Score = 132 bits (146), Expect = 1e-26 Identities = 199/280 (71%), Gaps = 2/280 (1%) Strand=Plus/Minus Query 40241 TGAGTTTCCCGATTATCGAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTT 40300 |||||||| | |||| |||| |||||||||||||||||||||| || || |||||||| Sbjct 369 TGAGTTTCTCAATTAATAAGAATTGTTCAGGGAGTCTGACATCAACAGAGCAGTAGCCTT 310 Query 40301 TTTTAATATTTCATTTTCCATTTCAATACGTTGTAGCTTTTTCCTGAGCTCACGGATTTC 40360 |||||| || || ||||| | ||||||||||| || |||| | || | || ||||| Sbjct 309 TTTTAAAATATCCTTTTCTAATTCAATACGTTCTATTGTTTTTTTAAGTGCTCGTATTTC 250 Query 40361 AATTTGTTCCGGGGTAATGGGGGAGGCTTTTGGTGTTTTGCCCTGCCGCTCATCACGTAA 40420 |||||| || | ||| || || | ||||| ||| | || | || || || | Sbjct 249 AATTTGCTCAGCGGTCATCGGTGCTGCTTTGGGTTTGACCCCTTTACGTTCTTCTTTGAG 190 Query 40421 TTGTTTCACCCA-TCGCGTCATTGTGGAAAGGCCGACATCCATAGCGCTGGCTGCATCTG 40479 ||||| ||||| | || | || || ||| || || |||| || | ||||||||| Sbjct 189 CTGTTTTACCCACTTGC-TAATGGTTGAATAACCAACTCCCATTGCTTTAGCTGCATCTT 131 Query 40480 CCACGGTGTAATTCTGGTCAACGACCAGTTGAGCGGATTC 40519 | ||||||| | ||||| || | ||||||| ||| Sbjct 130 CGTGGGTGTAACCATTATCAACAACTAACTGAGCGGTTTC 91 Score = 132 bits (146), Expect = 1e-26 Identities = 199/280 (71%), Gaps = 2/280 (1%) Strand=Plus/Minus Query 17616 TGAGTTTCCCGATTATCGAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTT 17675 |||||||| | |||| |||| |||||||||||||||||||||| || || |||||||| Sbjct 369 TGAGTTTCTCAATTAATAAGAATTGTTCAGGGAGTCTGACATCAACAGAGCAGTAGCCTT 310 Query 17676 TTTTAATATTTCATTTTCCATTTCAATACGTTGTAGCTTTTTCCTGAGCTCACGGATTTC 17735 |||||| || || ||||| | ||||||||||| || |||| | || | || ||||| Sbjct 309 TTTTAAAATATCCTTTTCTAATTCAATACGTTCTATTGTTTTTTTAAGTGCTCGTATTTC 250 Query 17736 AATTTGTTCCGGGGTAATGGGGGAGGCTTTTGGTGTTTTGCCCTGCCGCTCATCACGTAA 17795 |||||| || | ||| || || | ||||| ||| | || | || || || | Sbjct 249 AATTTGCTCAGCGGTCATCGGTGCTGCTTTGGGTTTGACCCCTTTACGTTCTTCTTTGAG 190 Query 17796 TTGTTTCACCCA-TCGCGTCATTGTGGAAAGGCCGACATCCATAGCGCTGGCTGCATCTG 17854 ||||| ||||| | || | || || ||| || || |||| || | ||||||||| Sbjct 189 CTGTTTTACCCACTTGC-TAATGGTTGAATAACCAACTCCCATTGCTTTAGCTGCATCTT 131 Query 17855 CCACGGTGTAATTCTGGTCAACGACCAGTTGAGCGGATTC 17894 | ||||||| | ||||| || | ||||||| ||| Sbjct 130 CGTGGGTGTAACCATTATCAACAACTAACTGAGCGGTTTC 91 >seq259072 Length=302 Score = 120 bits (132), Expect = 8e-23 Identities = 189/264 (72%), Gaps = 10/264 (4%) Strand=Plus/Plus Query 16752 TTGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTTCCAGTATCGATTTTCCG 16811 ||| ||||||||| |||||||||||| || || | || |||||||| || || | Sbjct 12 TTGTAGTGGTCAAGTAAAACTGGCCACGGATTTGTA-TTCAAGCCAGTATCTTTTCTCTG 70 Query 16812 ATTCGTTTGGTGGTAACCCACCATTATATTCGTGCGGTCTTAGTGCGCTGTAATATCCAA 16871 | || || |||| |||||| || ||||| ||| ||||| | | |||||||||||||| Sbjct 71 ACTCATTCGGTGTTAACCCTCCGTTATAACTGTGAGGTCTAACTTTGCTGTAATATCCAA 130 Query 16872 CGATATAGTCCGTTATTGCG---TGAGCTGC-ATCGCTGAAGCTTACATAGCCCGTCGCC 16927 ||| ||||| | || | | |||| | || || ||| ||| ||||| | Sbjct 131 TGATGTAGTCAACAACTGAGCTTTCAGCTTCAATAAATG-AGC---GATAACCCGTTGTT 186 Query 16928 GGCACCCATTC-GTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCA 16986 || | |||||| ||| || | | || ||||| |||||||| ||||| |||||||| || Sbjct 187 GGTATCCATTCTGTTTTTAAACTTTCTAAAGAATCGCTCCATCGGGCTATTATCCCAACA 246 Query 16987 GTTTCCACGCCGACTCATACTCTG 17010 || || || ||||||||||| || Sbjct 247 ATTGCCTCGTCGACTCATACTTTG 270 Score = 118 bits (130), Expect = 3e-22 Identities = 188/263 (71%), Gaps = 10/263 (4%) Strand=Plus/Plus Query 39378 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTTCCAGTATCGATTTTCCGA 39437 || ||||||||| |||||||||||| || || | || |||||||| || || || Sbjct 13 TGTAGTGGTCAAGTAAAACTGGCCACGGATTTGTA-TTCAAGCCAGTATCTTTTCTCTGA 71 Query 39438 TTCGTTTGGTGGTAACCCACCATTATATTCGTGCGGTCTTAGTGCGCTGTAATATCCAAC 39497 || || |||| |||||| || ||||| ||| ||||| | | |||||||||||||| Sbjct 72 CTCATTCGGTGTTAACCCTCCGTTATAACTGTGAGGTCTAACTTTGCTGTAATATCCAAT 131 Query 39498 GATATAGTCCGTTATTGCG---TGAGCTGC-ATCGCTGAAGCTTACATAGCCCGTCGCCG 39553 ||| ||||| | || | | |||| | || || ||| ||| ||||| | | Sbjct 132 GATGTAGTCAACAACTGAGCTTTCAGCTTCAATAAATG-AGC---GATAACCCGTTGTTG 187 Query 39554 GCACCCATTC-GTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAG 39612 | | |||||| ||| || | | || ||||| |||||||| ||||| |||||||| || Sbjct 188 GTATCCATTCTGTTTTTAAACTTTCTAAAGAATCGCTCCATCGGGCTATTATCCCAACAA 247 Query 39613 TTTCCACGCCGACTCATACTCTG 39635 || || || ||||||||||| || Sbjct 248 TTGCCTCGTCGACTCATACTTTG 270 >seq501738 Length=316 Score = 116 bits (128), Expect = 1e-21 Identities = 194/278 (70%), Gaps = 2/278 (1%) Strand=Plus/Plus Query 17115 ATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGTCCGGCGAGAACGACATGGCCCAGC 17174 ||||||||| || ||||| ||| ||| || || || || || |||| ||||| | Sbjct 12 ATGCCATTTTCAAAGCTTTACAGGTCAGCTCACTATCTGGTGATAATGACAAAGCCCATC 71 Query 17175 CCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAGCGCTTACCCG 17234 | || ||||| | | || | ||| | ||||||||| || || |||||||| ||||| | Sbjct 72 CAACAGGTTTGCGGGAAAATAAGTCTAAAACAACGGCTAGATAGGCCCAGCGATTACC-G 130 Query 17235 TCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCACGGCGAACTGCC 17294 ||| | ||| ||||| || || |||||||| |||| ||| | || || || ||||| | Sbjct 131 ACCAAACATACGTCACGTCGCCACACCACACTTGATCTGGTTGAGTTACTGCAAACTGTC 190 Query 17295 GTTCAAG-GTAGTTAGGGATAGCAACATGTTCATGACCACCACGTTTATACCGGTAAGTC 17353 | | ||| ||| | ||||| || ||||| || || || | |||| | | Sbjct 191 GATTAAGCGTATTCGGGGATCGCTACATGCTCTTGTGCAGCTTTCCTATAAGAATGCTTA 250 Query 17354 GGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCATGAG 17391 |||||||||||||| | | ||| |||| | |||| || Sbjct 251 GGCTGCTGACAGCTTAATAACCCAAGCTTTCTCATTAG 288 Score = 116 bits (128), Expect = 1e-21 Identities = 194/278 (70%), Gaps = 2/278 (1%) Strand=Plus/Plus Query 39740 ATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGTCCGGCGAGAACGACATGGCCCAGC 39799 ||||||||| || ||||| ||| ||| || || || || || |||| ||||| | Sbjct 12 ATGCCATTTTCAAAGCTTTACAGGTCAGCTCACTATCTGGTGATAATGACAAAGCCCATC 71 Query 39800 CCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAGCGCTTACCCG 39859 | || ||||| | | || | ||| | ||||||||| || || |||||||| ||||| | Sbjct 72 CAACAGGTTTGCGGGAAAATAAGTCTAAAACAACGGCTAGATAGGCCCAGCGATTACC-G 130 Query 39860 TCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCACGGCGAACTGCC 39919 ||| | ||| ||||| || || |||||||| |||| ||| | || || || ||||| | Sbjct 131 ACCAAACATACGTCACGTCGCCACACCACACTTGATCTGGTTGAGTTACTGCAAACTGTC 190 Query 39920 GTTCAAG-GTAGTTAGGGATAGCAACATGTTCATGACCACCACGTTTATACCGGTAAGTC 39978 | | ||| ||| | ||||| || ||||| || || || | |||| | | Sbjct 191 GATTAAGCGTATTCGGGGATCGCTACATGCTCTTGTGCAGCTTTCCTATAAGAATGCTTA 250 Query 39979 GGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCATGAG 40016 |||||||||||||| | | ||| |||| | |||| || Sbjct 251 GGCTGCTGACAGCTTAATAACCCAAGCTTTCTCATTAG 288 >seq508319 Length=243 Score = 87.8 bits (96), Expect = 5e-13 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 39787 GACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCC 39846 ||||| ||||| |||||| |||| || || | ||| | ||||| || ||||| ||| Sbjct 174 GACATTGCCCAACCCACTAACTTTCGAGCAAATAAGTCCATCACAACAGCCAGGTAAGCC 115 Query 39847 CAGCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTC 39906 || || | || ||||| ||| | || | |||||||||||| || |||| |||| Sbjct 114 CAACGAGTCCCTGTCCAAATAAACGTTATATCACCGCACCAAACTTGATCCGGCTGACAT 55 Query 39907 ACGGCGAACTGCCGTTCAAGGTAGTTAGGGATAGCAACATG 39947 || || ||||| |||||||| ||| || || || ||||| Sbjct 54 ACTGCAAACTGGCGTTCAAGTGTGTTCGGTATTGCTACATG 14 Score = 87.8 bits (96), Expect = 5e-13 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 17162 GACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCC 17221 ||||| ||||| |||||| |||| || || | ||| | ||||| || ||||| ||| Sbjct 174 GACATTGCCCAACCCACTAACTTTCGAGCAAATAAGTCCATCACAACAGCCAGGTAAGCC 115 Query 17222 CAGCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTC 17281 || || | || ||||| ||| | || | |||||||||||| || |||| |||| Sbjct 114 CAACGAGTCCCTGTCCAAATAAACGTTATATCACCGCACCAAACTTGATCCGGCTGACAT 55 Query 17282 ACGGCGAACTGCCGTTCAAGGTAGTTAGGGATAGCAACATG 17322 || || ||||| |||||||| ||| || || || ||||| Sbjct 54 ACTGCAAACTGGCGTTCAAGTGTGTTCGGTATTGCTACATG 14 >seq477953 Length=379 Score = 84.2 bits (92), Expect = 6e-12 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 39239 CCACCGTCGAACTCTCTCCAGTTGCTGGACGAAACGTTCTCGGTATCCGGGACGGAATTA 39298 ||||||||||||||||| || |||||||||||||||||| | ||| ||| ||||| | Sbjct 1 CCACCGTCGAACTCTCTACAACTGCTGGACGAAACGTTCTTGCCATCAGGGCTGGAATAA 60 Query 39299 TCCGCGACCAAACAGCACTGAGAACGCTTCAGGA 39332 || |||||| | || |||| | || ||||||| Sbjct 61 TCAAGGACCAAGCTGCGCTGAAAGCGTTTCAGGA 94 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131335277161200