Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_028762.1 Length=161989 Score E Sequences producing significant alignments: (Bits) Value seq155978 152 5e-32 seq427934 150 2e-31 seq449735 127 2e-24 seq497460 116 4e-21 seq521735 114 1e-20 seq351952 109 6e-19 seq506238 95.1 1e-14 seq513135 87.8 2e-12 seq250551 86.0 6e-12 >seq155978 Length=1540 Score = 152 bits (168), Expect = 5e-32 Identities = 281/415 (68%), Gaps = 16/415 (4%) Strand=Plus/Minus Query 140196 TGAAGTTAAATATAATGTGCTATTAACTAAAGAAAAATTATGTGTATGCATACATGGACG 140255 ||| |||||||| | |||| | | ||| ||||| | || || ||||| || || || Sbjct 1488 TGACGTTAAATAAAGTGTGTCACCTAATAATGAAAACGTGTGCGTGTGCATGCACGGGCG 1429 Query 140256 CAAACATCCTAAGTCAAATTCACCTGGGTTCCAGAAAGTAATAATTTCTCCACGGTCATC 140315 ||||| || | |||||||| |||||||| | ||| |||| ||||| || || || || Sbjct 1428 TAAACAGCCAAGCTCAAATTCGCCTGGGTTGTAAAAACTAATTATTTCACCGCGATCGTC 1369 Query 140316 AATACCTTGGCTTAAATTATCATATACTTTTCTTAGTTGGTCTA---CAGAACCA----- 140367 ||||| | |||| |||| | ||||||| ||||||||||| || ||| Sbjct 1368 TATACCATTTTTTAAGTTATTAATTACTTTTGCTAGTTGGTCTAGCGTTGAGCCATCTGG 1309 Query 140368 ----TTCCAAGAACGTCCTTGGACACCGTAAACACGACCCATATCATCGGGTCCTTTACG 140423 | ||||| ||| ||||| || || |||||||| ||||| || || |||||||| Sbjct 1308 GCGCTGCCAAGCACGCCCTTGTACGCCATAAACACGGCCCATGTCGTCCTCACCTTTACG 1249 Query 140424 ATTAGGATTATTTAACCATGATTCGTTNNNNNNNNNNNNNNNNNNCCATGTATTACACCC 140483 | |||||||| | ||| | || ||| || ||||| || Sbjct 1248 GTGCGGATTATTAAGCCAAGCGCTATTTTCGTTTGCGTTTGCATCCCAGGTTTTACAGCC 1189 Query 140484 AATCTCACGAAATTGTGCAGCACTTGAATACCCACGAAGATATCCTAGCAGTTCAGCAAT 140543 || || ||||| ||||| || || || ||||| | || || || | ||| ||||| Sbjct 1188 TATTTCGCGAAACTGTGCCGCGCTATCGTAGCCACGCAAGTAACCGAGTAATTCGGCAAT 1129 Query 140544 AGCAGCTTTATAAAAACTTTTACGTGTAGT-ATCAATAGGAAATTCAGAATATTC 140597 ||| ||||| ||| | ||||||||||| || ||| |||||||| | || ||||| Sbjct 1128 AGCTGCTTTGTAATAGCTTTTACGTGTGGTGATC-ATAGGAAA--CTGATTATTC 1077 >seq427934 Length=2050 Score = 150 bits (166), Expect = 2e-31 Identities = 466/720 (65%), Gaps = 24/720 (3%) Strand=Plus/Minus Query 139888 AATGGGTATTTAATTGCAGGGTGATATTGATAATCTTGTATCTCAAAATCATCTACGGTA 139947 || ||||||||||| ||| ||||| ||||||||||| | ||| ||||| | ||| Sbjct 1530 AAAGGGTATTTAATCGCATCGTGATGTTGATAATCTTCAACGCTAAAGTCATCCAAGGTT 1471 Query 139948 ACCCAGGTTTCAATATCTTCTAAAGATTGAATGTTATCATTAATAATAAGTTTTGGTGCC 140007 ||||| ||||| || |||| || | || ||| || ||| || || || || || | Sbjct 1470 ACCCAAGTTTCGATGTCTTTTAGGGTTTTAATTTTTGGATTGATGATTAGCTTAGGCGAT 1411 Query 140008 TCAAAT-GGCTCTCTAGAGATATGT---TCTGGAACCAATTTAAGTTGGTCTTCATAGAT 140063 |||| || || | | || || || | | || |||||||||||| || || Sbjct 1410 GCAAAACGGTTCGCGCGCGAGCTGGACATCCCGCATGGGTTCAAGTTGGTCTTCGTAAAT 1351 Query 140064 ATGAGCATTTGTAATTTTATGAAATACACGCCCAAATTTATTGCCGGTAATTTGTGCCAT 140123 ||||||||| || ||||| || | ||| ||||| ||| ||||| || ||||| Sbjct 1350 ATGAGCATTGACTATCTTATGGTATGCCTTACCAGGTTTATGGCCAGTAATCTGGGCCAT 1291 Query 140124 TAAGCGTAA-TAAAACATAACACTGTACCATATTAAAATTTAATCCCAATGGGACATCAC 140182 ||| || || ||| ||||| |||||||| || || ||||| || | || ||||||| Sbjct 1290 TAA-CGCAAGTAATACATATACTTGTACCATGTTGAAGTTTAACCCTAGCGGAACATCAC 1232 Query 140183 A--TGATCTTTGGTATGAAGTT-AAATATAATGTGCTATTAACTAAAGAAAAATTATGTG 140239 | || || || || ||| | || || || | | ||| ||||||| ||| Sbjct 1231 AACTGCGCT---GTGTGCTGTTGAGGTACAAAGTATCACCGAGTAATGAAAAATGGTGTT 1175 Query 140240 TATGCATACATGGACGCAAACATCCTAAGTCAAATTCACCTGGGTTCCAGAAAGTAATAA 140299 | ||||||||| ||||| || |||||||||||| | || || | |||| || | || Sbjct 1174 CGTACATACATGGTCGCAAGCAACCTAAGTCAAATGCTCCAGGATGAAAGAAGGTTAAAA 1115 Query 140300 TTTCTCCACGGTCATCAATACCTTGGCTTAAATTATCATATACTTTTCTTAGTTGGTCTA 140359 | || || |||| ||| ||||| | || | | || | || | ||| || | Sbjct 1114 TCTCACCGCGGTTATCTATACCATTACTGAGGTCGTCGACGATTTGTTGCAGTAAATCGA 1055 Query 140360 CAGAACCA----------TTCCAA--GAACGTCCTTGGACACCGTAAACACGACCCATAT 140407 || |||| || || | ||| ||| | ||||| | | ||||||| Sbjct 1054 CATGACCACCATCAGGCTTTGGAAATGCACGCCCTAACGCCCCGTATATCAGCCCCATAT 995 Query 140408 CATCGGGTCCTTTACGATTAGGATTATTTAACCATGATTCGTTNNNNNNNNNNNNNNNNN 140467 |||| || ||||||||||| || |||| || ||||| || ||| Sbjct 994 CATCAGGACCTTTACGATTTGGGTTATCTAGCCATGCTTGGTTTTCATTGGCGTTGGCGT 935 Query 140468 NCCATGTATTACACCCAATCTCACGAAATTGTGCAGCACTTGAATACCCACGAAGATATC 140527 |||||| ||| || | | | ||| | || ||| || || ||||| | ||||| Sbjct 934 CCCATGTTTTAGTGCCTAAAGCTCTAAAATCGGCCGCATTTTGGTAGCCACGTAAATATC 875 Query 140528 CTAGCAGTTCAGCAATAGCAGCTTTATAAAAACTTTTACGTGTAGTATCAATAGGAAATT 140587 ||| | || || || |||| || | || ||||||||||| || | | |||||||| Sbjct 874 CTAAGATCTCGGCTATGGCAGACTTCCAGAAGCTTTTACGTGTGGTCACTAAAGGAAATT 815 >seq449735 Length=3187 Score = 127 bits (140), Expect = 2e-24 Identities = 329/494 (67%), Gaps = 12/494 (2%) Strand=Plus/Minus Query 137420 AAAATAAGCATCATACATACCAGGGATTTCATGTGGACTAAACAATGTAATATAATCATC 137479 |||| | ||||| || | || || | ||| || |||||||| ||||| || || || Sbjct 522 AAAAAATGCATCGTAAAGGCCTGGCACATCAGAGGGGCTAAACAAGGTAATGTAGTCGTC 463 Query 137480 ATTAATTAGTCGTTCAATCATAAGGTCATTAATTTGAACACCATAATCTAAATGACGAAT 137539 ||||||| || ||| || | ||||| || || || |||||||||||||| | Sbjct 462 TTTAATTAAACGCGAGTACATTAGTTTATTAAACTGTACGCCGTAATCTAAATGACGCAC 403 Query 137540 ACGGTTTTCTTCAATACCTTTATTATTTTTAAGAACTAACAATTTTTCTAATTCAAGGTG 137599 ||||| || |||| || ||||||||||| ||||||| ||||||| ||| | || Sbjct 402 GCGGTTGTCATCAACCCCGCGGTTATTTTTAAGTACTAACAGGTTTTCTACTTCTAAATG 343 Query 137600 CCACATTGGGTAATATAAAGTAGCAGAACCACCTCGAATCCCACCTTGGGAACATGATTT 137659 ||| | ||||| | || || || | || || || | || ||||| ||||| ||| Sbjct 342 CCAAAGCGGGTAGAACAAGGTTGCTGCGCCGCCACGTACACCGCCTTGCGAACAGCTTTT 283 Query 137660 TACAGATG--CCAAATGGGTTTTCCAAAATGGAATGACACCGGTATGGACAACTTCGCCA 137717 || | || ||| | || | |||| ||||| ||| |||||| ||||||| Sbjct 282 AACCGCTGTTTGAAAGTGCTTAT--AAAAAGGAATACAACCCGTATGGTACGCTTCGCC- 226 Query 137718 AATCCTATTTTAG--ACCC--TTCAGCCCTATACATACCGGCATTAATACCAATACCAGC 137773 | | | | | | | |||| | || | || | ||| || ||||| ||||| || || Sbjct 225 ATTGCGAATGTGGCTACCCAGTGCA--CGAATGC-GACCTGCGTTAATGCCAATGCCGGC 169 Query 137774 TCTTTTAGAAATGTATTTTACAATAGCTGCATTTGTTTCATTAATAGAATCTAAAGAATC 137833 | || || | |||||| ||||| || | || | ||||| ||||| | || Sbjct 168 ACGTTGCGATACGTATTTAACAATTGCAGACGAGGTGGCGTTAATTGAATCAAGGCTGTC 109 Query 137834 ACCGCTATCAATAACTACGCAAGAACTAAATTGACGTGTTGGGGTTCTTACACCAGACAA 137893 || | || || | ||| || || ||||| || |||||||| || | ||||| | || Sbjct 108 GCCACACTCTATTAATACACACGAGCTAAACTGGCGTGTTGGCGTACGAACACCTGCCAT 49 Query 137894 AATTGGTGTTGGTA 137907 |||||| || |||| Sbjct 48 AATTGGCGTAGGTA 35 Score = 105 bits (116), Expect = 7e-18 Identities = 300/455 (66%), Gaps = 12/455 (3%) Strand=Plus/Minus Query 135652 TTAATAAGATCATCATAATATTTTGTAATGGATTCTGCTCGGGCCATAATTGCGTCATCA 135711 ||||| | |||||| || |||||||| | | || || || | ||||| ||||| Sbjct 2253 TTAATTAAATCATCGTAGTATTTTGTTACCGCATCGGCACGTTCACTAATTTTGTCATTG 2194 Query 135712 AGAACAATCTCATCAAATTCTTTTGAAGGGTCTTCATAAAGATTACGCATAATATGGGTA 135771 ||| || |||||||| | ||| ||| || |||||| |||||||| || Sbjct 2193 CTAACTATGTCATCAAAAATAAGTTCAGGTGCTTGGGTAACATTACGAATAATATGCGTG 2134 Query 135772 TACGAACGAGAATGAATTGTTTCACTAAATGACCAGGTCTGAATCCATGTTTCTAAAGAT 135831 ||||| || |||||| ||||||||||| | ||| || | |||||||||||||| | Sbjct 2133 TACGAGCGGCTATGAATCGTTTCACTAAACGCCCACGTTTCTATCCATGTTTCTAACTCT 2074 Query 135832 ACATCAGAACAAATAGATAATAAAGCCTCTGAAGGACCTCTGCCTTGGATTGAATCTAAT 135891 || ||||| || || ||| | || | ||||| | ||| | Sbjct 2073 GGTAGCGATACAATAGGTAGTAGGGCCACGTTTGGTGAACGCCCTTGTACGCTATCAAGC 2014 Query 135892 AATGTTTGATATTTTAAATTATTAGTAAAGATTCTTTTTTCGTGTTCAGGTAATTTGTCA 135951 ||||||||||||||||| ||| | ||| || ||||| || ||||||||| | | Sbjct 2013 AATGTTTGATATTTTAAGTTACTTAAAAATATATGCTTTTCATGATCAGGTAATGCTTGA 1954 Query 135952 TATTGTGCCTTATCTGTCATTAAGTTTACTTCTTCAGGACGCCaaaaaaaGCTTAAAGCT 136011 | | | ||| | ||| || ||||||||| || ||||||||||| |||||| Sbjct 1953 AAGTCTAAGCGGTCTTTGCTTACGTCTACTTCTTCTGGGCGCCAAAAAAA--CGAAAGCT 1896 Query 136012 --TTTTCAGTCAAGTCTTCAAAGACCCGATGTTTTACTGTT--TCGTAACGTGCAATACC 136067 |||||| | | | |||||| | | | |||| |||| || ||||| | |||| Sbjct 1895 GCTTTTCAATTAGTTTTTCAAAAATAGGGTATTTT--TGTTGATCATAACGAG--ATACG 1840 Query 136068 T--GTGGATTCACCAAAAAACATTGGTTGTTCCAT 136100 | || || || ||||||||||| | |||||| Sbjct 1839 TTAACGGTTTGGCCGAAAAACATTGGCTCTTCCAT 1805 >seq497460 Length=577 Score = 116 bits (128), Expect = 4e-21 Identities = 210/303 (69%), Gaps = 3/303 (1%) Strand=Plus/Minus Query 129154 TTTTTGAATCCAACAGCCATAGGTAATCCTGAAGCAATTTCACGATGGGTCTGTGATTCT 129213 ||||| || ||||||| ||||| || || || |||||||| || || |||||||| Sbjct 543 TTTTTAAAGCCAACAGGCATAGACAAACCACTGGCCATTTCACGGTGAGTTTGTGATTCA 484 Query 129214 GTAGTACGAGCACCAATAGCGACCCAACTAAAAATACCTGATAGATACTTAATAGTAAAT 129273 |||||||| ||||||||||| ||| ||||| | | | | || | | ||| | Sbjct 483 GTAGTACGCGCACCAATAGCAGACCAGCTAAACAGATCGCCAATGTATTGTGGACTAATT 424 Query 129274 GGGTCCAAGACCTCTGTCGCCAAAGGAAGTCCAAGATTCAATAGTTC-TAAACAGAGATG 129332 || ||||| | || ||||| | ||| | || | | || | | | ||| | || | Sbjct 423 GGATCCAATGCTTCAGTCGCGATAGGTAAACCTA-ACTCTGAAATCCATAATAATAGTTC 365 Query 129333 GCGGGCAATTCTTAACCCTTCATCAATATTAAAAGAACCATTTAATTCTGGGTCGTTGAC 129392 || || || | | || || |||| ||| || ||| | | |||||||| | Sbjct 364 ACGCGCTTTTTTAAGGCCGGTTTCGATATCAAATGAGTCATCCATATGAGGGTCGTTAAT 305 Query 129393 TAGGCCTTTCCAACCTACAGTTGTGCGTGGTTTTTCAAAATAAACCCGCATAACCAATAG 129452 ||| ||||||||||| || || || |||||||||||||||||||| ||||||| ||||| Sbjct 304 TAGCCCTTTCCAACCCACTGTAGTACGTGGTTTTTCAAAATAAACACGCATAA-CAATAT 246 Query 129453 ATA 129455 ||| Sbjct 245 ATA 243 >seq521735 Length=281 Score = 114 bits (126), Expect = 1e-20 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 140382 TTGGACACCGTAAACACGACCCATATCATCGGGTCCTTTACGATTAGGATTATTTAACCA 140441 ||| || ||||| || |||||||| ||||| ||||| || | ||||||| | ||||| Sbjct 34 TTGCACGCCGTACACCCGACCCATGTCATCAACGCCTTTGCGGTGAGGATTACTAAACCA 93 Query 140442 TGATTCGTTNNNNNNNNNNNNNNNNNNCCATGTATTACACCCAATCTCACGAAATTGTGC 140501 |||||||| ||| ||||| |||||||| ||||||| ||||| Sbjct 94 AGATTCGTTTTCGTTCGCGTTAGCATTCCACGTATTGCACCCAATAGCACGAAACTGTGC 153 Query 140502 AGCACTTGAATACCCACGAAGATATCCTAGCAGTTCAGCAATAGCAGCTTTATAAAAACT 140561 ||||| || ||||| ||||| |||| | |||||| ||||| ||||| ||| ||| Sbjct 154 CGCACTATCGTAACCACGCAGATAACCTAATAATTCAGCTATAGCCGCTTTGTAATGACT 213 Query 140562 TTTACGTGTAGT 140573 ||||||||| || Sbjct 214 TTTACGTGTCGT 225 >seq351952 Length=416 Score = 109 bits (120), Expect = 6e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 55556 ATAACATCTTCTTTCTGTTCTGCAGTCAGAGAATTAAATCTGACGGCATACCCAGAAACG 55615 || ||||||| || ||||||||||| | || ||||||| || || || || || || Sbjct 49 ATTACATCTTGCTTTTGTTCTGCAGTTAACGAGTTAAATCGTACTGCGTAACCCGATACA 108 Query 55616 CGAATTGTTAATTGTGGATATTTTTCAGGATGTTCTTTAGCATCTAACAACATTTCTTTA 55675 |||||||||||||||||||| || || |||| ||| | ||||| || |||||||| Sbjct 109 CGAATTGTTAATTGTGGATACTTATCTGGATTTTCCATTGCATCCAATAACATTTCACGG 168 Query 55676 TTAAGAACATTGACATTCAGATGTTGTCCACCTTCGAT 55713 || | ||||| || || | ||||| |||||||| || Sbjct 169 TTCATTACATTAACGTTTAAGTGTTGACCACCTTCAAT 206 >seq506238 Length=275 Score = 95.1 bits (104), Expect = 1e-14 Identities = 127/174 (73%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 55538 TCAGTAAATGTTC-TGTTAATAACATCTTCTTTCTGTTCTGCAGTCAGAGAATTAAATCT 55596 || |||||||| | |||||||| | |||| | ||||||| || | || ||||| | Sbjct 49 TCTGTAAATGTACGTGTTAATA-CGTCTTGCTGTTGTTCTGGTGTTAATGAGTTAAAACG 107 Query 55597 GACGGCATACCCAGAAACGCGAATTGTTAATTGTGGATATTTTTCAGGATGTTCTTTAGC 55656 || || || || || || ||||| ||||||||||||||||||||||| |||| ||| Sbjct 108 CACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGTGTTTAACAGC 167 Query 55657 ATCTAACAACATTTCTTTATTAAGAACATTGACATTCAGATGTTGTCCACCTTC 55710 |||| ||| |||| | | ||||| || || | |||||| |||||||| Sbjct 168 ATCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTTGACCACCTTC 221 >seq513135 Length=367 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 137798 AGCTGCATTTGTTTCATTAATAGAATCTAAAGAATCACCGCTATCAATAACTACGCAAGA 137857 |||||||| || |||| || ||||||||| || | |||||||| || ||||| Sbjct 347 AGCTGCAT--GTAGCATTGATTGAATCTAAACTGTCGTTGGACTCAATAACCACACAAGA 290 Query 137858 ACTAAATTGACGTGTTGGGGTTCTTACACCAGACAAAATTGGTGTTGGTA 137907 ||||||||| ||||| || ||||| || ||||||| ||| |||||||||| Sbjct 289 ACTAAATTGTCGTGTAGGTGTTCTAACCCCAGACATAATAGGTGTTGGTA 240 >seq250551 Length=853 Score = 86.0 bits (94), Expect = 6e-12 Identities = 193/290 (67%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 41860 TAATCCCAAACTTGTTCTAATGCTTTTAAATTATCTTTCATATTAGGAAGTTCTACATAA 41919 ||||||||||| | ||| | |||| | ||| | | ||| || ||| ||| | ||| Sbjct 570 TAATCCCAAACGTTTTCGAGCGCTTCAATATTGTGCTGCATGTTGGGATATTCGCCGTAA 511 Query 41920 GAAATATGACCACCAGTGGCAATACGATGATAATCCTTTTCAAAATCAATTTTTTCAAAC 41979 ||||| || ||| |||| || ||||| | |||||||||||| || ||||| Sbjct 510 CAAATAAACCCGCCATTGGCGATGGCTGGATAAGGTTGTTCAAAATCAATCTTATCAAAA 451 Query 41980 GGGTTAACTTTACGTTCTACATCAAGGTGAAAACTATTTGTATACCAACCTTTATCTGTA 42039 || || ||||| ||| ||||| | ||| || ||||| || || | ||||| || || Sbjct 450 GGATTTACTTTCTTTTCAACATCTAAGTGGAAGCTATTGGTGTAATAGCCTTTGTCGGTC 391 Query 42040 ATTCCTTTAACAGAACCAAATTCTGCTTTATCTAATTTACAGAATCTGTGGCATAGACTT 42099 | ||| ||| ||||| | | |||||| | || || | | ||||| || Sbjct 390 ACACCTGCCACAACGCCAAACTGGGTGGTATCTAGCTGGCAAAAACGGCTGCATAAGTTT 331 Query 42100 TCAGCAGGAGTAGAATAAAGACTGAATGCATATCCAGTTTCTTCTTTCCA 42149 ||| || ||| || | ||| || |||| || ||||||| |||||| Sbjct 330 TCACTTGGGGTACTGTATAAACTAAAGCCATAACCTGTTTCTTGTTTCCA 281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514832619064080