Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_028780.1
Length=167124
Score E
Sequences producing significant alignments: (Bits) Value
seq449735 194 2e-44
seq506238 143 3e-29
seq487923 104 2e-17
seq351952 100 3e-16
seq509673 96.9 4e-15
seq326422 86.0 7e-12
>seq449735
Length=3187
Score = 194 bits (214), Expect = 2e-44
Identities = 494/741 (67%), Gaps = 23/741 (3%)
Strand=Plus/Plus
Query 22794 ATTTCATTGCCAACTCCTATTATGGCTGGTTGTCGTACTCCGACTCGACAGTTTAGTTCA 22853
|||||| | || || || |||||||| ||| |||||| || || || |||||||| ||
Sbjct 28 ATTTCACTACCTACGCCAATTATGGCAGGTGTTCGTACGCCAACACGCCAGTTTAGCTCG 87
Query 22854 TGCGTTGTTATTGAGGCAGGTGATTCATTAAAGTCTATCAATAAGGCTTCCGCTTCAATT 22913
|| || | || ||| || || | | || || || | || || |||||
Sbjct 88 TGTGTATTAATAGAGTGTGGCGACAGCCTTGATTCAATTAACGCCACCTCGTCTGCAATT 147
Query 22914 GTTGAATATATCTCTAAACGCGCTGGAATTGGTATTAACGTTGGTATGATTCGTGCCGAA 22973
||| |||| | || |||| || || ||||| ||||||| ||| ||||||||
Sbjct 148 GTTAAATACGTATCGCAACGTGCCGGCATTGGCATTAACGCAGGTCGCATTCGTGCACTG 207
Query 22974 GGTTCTAAGATTGGCATGGGTGAAGTACGCCATACTGGTGTTATTCCTTTTTGGAAACAT 23033
||| | ||| ||| || |||| |||||| ||| ||||||||||| || ||
Sbjct 208 GGTAGCCACATTCGCAATGGCGAAGCGTACCATACGGGTTGTATTCCTTTTTATAAGCAC 267
Query 23034 TTTCAGACTGCTGTTAAATCATGTTCACAGGGCGGAATTCGTGGTGGCGCTGCTACTGCT 23093
||||| || || |||||| ||||| || ||||| | ||||| ||||| || || ||
Sbjct 268 TTTCAAACAGCGGTTAAAAGCTGTTCGCAAGGCGGTGTACGTGGCGGCGCAGCAAC--CT 325
Query 23094 TAT--TATCCTATTTGGCATTTGGAAGTTGAAAATCTTCTCGTTTTGAAAAATAACAAAG 23151
| | || || |||||||||| ||||| ||||| || | || | ||||||||| |
Sbjct 326 TGTTCTACCCGCTTTGGCATTTAGAAGTAGAAAACCTGTTAGTACTTAAAAATAACCGCG 385
Query 23152 GTGTAGAAGAAAACCGCATTCGTCATATGGATTATGGTGTTCAACTGAATGATCTAATGA 23211
| || || || |||||| | |||||| | ||||| || || || | ||| | ||||||
Sbjct 386 GGGTTGATGACAACCGCGTGCGTCATTTAGATTACGGCGTACAGTTTAATAAACTAATGT 445
Query 23212 TGGAACGTTTTGGAAAGAACGACTACATTACTTTGTTCAGTCCGCATGAAATGGGTGGCG 23271
||||| || ||||||||||||| ||||| || || ||| || |||
Sbjct 446 ACTCGCGTTTAATTAAAGACGACTACATTACCTTGTTTAGCCCCTCTGATGTGCCAGGC- 504
Query 23272 AGCTTTATTATTCTTATTTTAAAGACCAAGAC-CGTTT-CCGTGAATTATACGAAGCAGC 23329
||||| || | | |||| ||||||||||| |||| || | |||| | | |
Sbjct 505 --CTTTACGATGCATTTTTTGAAGACCAAGACGAGTTTGACGCGCTTTAT--GTAAAATA 560
Query 23330 AGAAAAAGACCCTAAT--ATTCGTAAAAAGCGTATTAAAGCCCGTGAACTATT-TGAA-- 23384
||| |||| | ||| ||||||||||| || |||||||| |||||| || | ||
Sbjct 561 CGAACAAGA--CGAATCAATTCGTAAAAAACGCATTAAAGCTATTGAACTGTTCTCAATG 618
Query 23385 -TTGCTCATGACTGAACGCTCAGGAACAGCAAGGATTTATGTACAGTTCATTGATAATAC 23443
|||| || ||||| || | || | | ||||| |||| | |||| |
Sbjct 619 TTTGCGCA----AGAACGTGCAAGTACCGGTCGTATTTACTTACAAAACGTTGACCACTG 674
Query 23444 GAATAACTATACTCCGTTTATTCGTGAAAAGGCACCTATTCGTCAGAGTAACTTGTGCTG 23503
|||| | | ||||| ||| | || |||||||||||| || ||| || || |
Sbjct 675 TAATACGCACAGCCCGTTCATTGCTAAAGTGGCACCTATTCGCCAATCTAATTTATGTTT 734
Query 23504 TGAAATTGCTATTCCAACAAA 23524
|||||||| | ||||| ||
Sbjct 735 AGAAATTGCATTACCAACTAA 755
>seq506238
Length=275
Score = 143 bits (158), Expect = 3e-29
Identities = 142/184 (77%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 101919 GAAGGTGGTCAACACCTGAACGTTAACGTTTTGCGTCGTGAAACTCTGGAAGATGCAGTT 101978
|||||||||||||| | ||||| || || || ||||||||||| |||||||||| |||
Sbjct 221 GAAGGTGGTCAACATTTAAACGTGAATGTGTTACGTCGTGAAACATTGGAAGATGCTGTT 162
Query 101979 AAGCATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTT 102038
|| || || ||||||||||| || | || || |||||||| ||||| ||||| || |||
Sbjct 161 AAACACCCTGAAAAATATCCACAATTAACTATTCGTGTATCAGGTTACGCAGTGCGTTTT 102
Query 102039 AACTCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTCACCGAGAGTTTG 102098
||||| | || || ||||| |||| ||||| | | ||||| || || || | |||
Sbjct 101 AACTCATTAACACCAGAACAACAGCAAGACGTATTAACACGTACATTTACAGAAACATTG 42
Query 102099 TAAT 102102
||||
Sbjct 41 TAAT 38
>seq487923
Length=1072
Score = 104 bits (114), Expect = 2e-17
Identities = 147/201 (73%), Gaps = 7/201 (3%)
Strand=Plus/Plus
Query 139516 ATCATGATTTATACTCGTCCATCTATGCAGTTTGACTACAATAAAGATGGTATGTCAGAT 139575
|| |||||||||||| | || ||||| || ||| | |||| ||| |||||||||
Sbjct 333 ATTATGATTTATACTAGACCTTCTATTCAAAGTGAATGGAATACTAATGAAATGTCAGAT 392
Query 139576 TTCATGTGTACGAATACAGTACAATACCTGATTCGTGATAAGAAAGTCAATGCA-GTAGT 139634
|| || ||||| |||| || ||| | ||||||||||| ||| | ||| | | ||
Sbjct 393 TTTATTTGTACTAATAATGTTCAAGTATTTATTCGTGATAATAAA-TTAATCTATATTGT 451
Query 139635 -AAGCATGCGCTCAAATGACGTGGTCTTCGGATTCCGTAATGATTATGCATGGCAAAAAT 139693
|| || ||||||| ||||| || |||||||| ||||||||| |||||||| || |
Sbjct 452 CAATCA-GCGCTCATGTGACGCAGTATTCGGATTTGGTAATGATTTAGCATGGCATAAGT 510
Query 139694 ACGTATTAGATAAATTAGTAT 139714
| |||| |||||||| |||
Sbjct 511 ATGTAT---ATAAATTACTAT 528
>seq351952
Length=416
Score = 100 bits (110), Expect = 3e-16
Identities = 126/173 (73%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 101916 ATTGAAGGTGGTCAACACCTGAACGTTAACGTTTTGCGTCGTGAAACTCTGGAAGATGCA 101975
|||||||||||||||||| | |||||||| || || ||||||| | ||||||
Sbjct 206 ATTGAAGGTGGTCAACACTTAAACGTTAATGTAATGAACCGTGAAATGTTATTGGATGCA 147
Query 101976 GTTAAGCATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGC 102035
| | |||| || || ||||| || | || || |||||||| ||||| ||||| ||
Sbjct 146 ATGGAAAATCCAGATAAGTATCCACAATTAACAATTCGTGTATCGGGTTACGCAGTACGA 87
Query 102036 TTTAACTCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTCAC 102088
|||||||| | ||| | ||||| ||| || || ||| | |||||||| ||
Sbjct 86 TTTAACTCGTTAACTGCAGAACAAAAGCAAGATGTAATCACACGTACCTTTAC 34
>seq509673
Length=441
Score = 96.9 bits (106), Expect = 4e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 23004 CATACTGGTGTTATTCCTTTTTGGAAACATTTTCAGACTGCTGTTAAATCATGTTCACAG 23063
||||| ||| ||| || || | |||| || || ||||||||||||| || |||||
Sbjct 418 CATACGGGTTGTATCCCATTCTATAAACTGTTCCAAACTGCTGTTAAATGCTGCTCACAA 359
Query 23064 GGCGGAATTCGTGGTGGCGCTGCTACTGCTTATTATCCTATTTGGCATTTGGAAGTTGAA 23123
||||| | ||||| || || || || | ||| || | |||||||| ||||||||
Sbjct 358 GGCGGCGTCCGTGGCGGTGCAGCGACGTTGTTTTACCCATTATGGCATTTAGAAGTTGAG 299
Query 23124 AATCTTCTCGTTTTGAAAAATAACAAAGGTGTAGAAGAAAACCGCATTCGTCATATGGAT 23183
| | || ||||||||||| || || ||||| ||||| | ||||||||||||
Sbjct 298 TCATTATTGGTACTGAAAAATAACCGCGGCGTGGAAGACAACCGTGTCCGTCATATGGAT 239
Query 23184 TATGGTGTTCA 23194
|| || || ||
Sbjct 238 TACGGCGTACA 228
>seq326422
Length=2068
Score = 86.0 bits (94), Expect = 7e-12
Identities = 69/82 (84%), Gaps = 1/82 (1%)
Strand=Plus/Minus
Query 93009 GCGGATATCGTATAATGG-TATTACCTCAGACTTCCAATCTGATGATGTGAGTTCGATTC 93067
|||| |||||||||||| ||||||||||| ||||||| ||||||||| | |||||||||
Sbjct 404 GCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTC 345
Query 93068 TCATTATCCGCTCCAATTTATG 93089
| | |||||||| ||||||
Sbjct 344 CCGCTGCCCGCTCCAGTTTATG 323
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531156680953280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |