Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_028780.1 Length=167124 Score E Sequences producing significant alignments: (Bits) Value seq449735 194 2e-44 seq506238 143 3e-29 seq487923 104 2e-17 seq351952 100 3e-16 seq509673 96.9 4e-15 seq326422 86.0 7e-12 >seq449735 Length=3187 Score = 194 bits (214), Expect = 2e-44 Identities = 494/741 (67%), Gaps = 23/741 (3%) Strand=Plus/Plus Query 22794 ATTTCATTGCCAACTCCTATTATGGCTGGTTGTCGTACTCCGACTCGACAGTTTAGTTCA 22853 |||||| | || || || |||||||| ||| |||||| || || || |||||||| || Sbjct 28 ATTTCACTACCTACGCCAATTATGGCAGGTGTTCGTACGCCAACACGCCAGTTTAGCTCG 87 Query 22854 TGCGTTGTTATTGAGGCAGGTGATTCATTAAAGTCTATCAATAAGGCTTCCGCTTCAATT 22913 || || | || ||| || || | | || || || | || || ||||| Sbjct 88 TGTGTATTAATAGAGTGTGGCGACAGCCTTGATTCAATTAACGCCACCTCGTCTGCAATT 147 Query 22914 GTTGAATATATCTCTAAACGCGCTGGAATTGGTATTAACGTTGGTATGATTCGTGCCGAA 22973 ||| |||| | || |||| || || ||||| ||||||| ||| |||||||| Sbjct 148 GTTAAATACGTATCGCAACGTGCCGGCATTGGCATTAACGCAGGTCGCATTCGTGCACTG 207 Query 22974 GGTTCTAAGATTGGCATGGGTGAAGTACGCCATACTGGTGTTATTCCTTTTTGGAAACAT 23033 ||| | ||| ||| || |||| |||||| ||| ||||||||||| || || Sbjct 208 GGTAGCCACATTCGCAATGGCGAAGCGTACCATACGGGTTGTATTCCTTTTTATAAGCAC 267 Query 23034 TTTCAGACTGCTGTTAAATCATGTTCACAGGGCGGAATTCGTGGTGGCGCTGCTACTGCT 23093 ||||| || || |||||| ||||| || ||||| | ||||| ||||| || || || Sbjct 268 TTTCAAACAGCGGTTAAAAGCTGTTCGCAAGGCGGTGTACGTGGCGGCGCAGCAAC--CT 325 Query 23094 TAT--TATCCTATTTGGCATTTGGAAGTTGAAAATCTTCTCGTTTTGAAAAATAACAAAG 23151 | | || || |||||||||| ||||| ||||| || | || | ||||||||| | Sbjct 326 TGTTCTACCCGCTTTGGCATTTAGAAGTAGAAAACCTGTTAGTACTTAAAAATAACCGCG 385 Query 23152 GTGTAGAAGAAAACCGCATTCGTCATATGGATTATGGTGTTCAACTGAATGATCTAATGA 23211 | || || || |||||| | |||||| | ||||| || || || | ||| | |||||| Sbjct 386 GGGTTGATGACAACCGCGTGCGTCATTTAGATTACGGCGTACAGTTTAATAAACTAATGT 445 Query 23212 TGGAACGTTTTGGAAAGAACGACTACATTACTTTGTTCAGTCCGCATGAAATGGGTGGCG 23271 ||||| || ||||||||||||| ||||| || || ||| || ||| Sbjct 446 ACTCGCGTTTAATTAAAGACGACTACATTACCTTGTTTAGCCCCTCTGATGTGCCAGGC- 504 Query 23272 AGCTTTATTATTCTTATTTTAAAGACCAAGAC-CGTTT-CCGTGAATTATACGAAGCAGC 23329 ||||| || | | |||| ||||||||||| |||| || | |||| | | | Sbjct 505 --CTTTACGATGCATTTTTTGAAGACCAAGACGAGTTTGACGCGCTTTAT--GTAAAATA 560 Query 23330 AGAAAAAGACCCTAAT--ATTCGTAAAAAGCGTATTAAAGCCCGTGAACTATT-TGAA-- 23384 ||| |||| | ||| ||||||||||| || |||||||| |||||| || | || Sbjct 561 CGAACAAGA--CGAATCAATTCGTAAAAAACGCATTAAAGCTATTGAACTGTTCTCAATG 618 Query 23385 -TTGCTCATGACTGAACGCTCAGGAACAGCAAGGATTTATGTACAGTTCATTGATAATAC 23443 |||| || ||||| || | || | | ||||| |||| | |||| | Sbjct 619 TTTGCGCA----AGAACGTGCAAGTACCGGTCGTATTTACTTACAAAACGTTGACCACTG 674 Query 23444 GAATAACTATACTCCGTTTATTCGTGAAAAGGCACCTATTCGTCAGAGTAACTTGTGCTG 23503 |||| | | ||||| ||| | || |||||||||||| || ||| || || | Sbjct 675 TAATACGCACAGCCCGTTCATTGCTAAAGTGGCACCTATTCGCCAATCTAATTTATGTTT 734 Query 23504 TGAAATTGCTATTCCAACAAA 23524 |||||||| | ||||| || Sbjct 735 AGAAATTGCATTACCAACTAA 755 >seq506238 Length=275 Score = 143 bits (158), Expect = 3e-29 Identities = 142/184 (77%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 101919 GAAGGTGGTCAACACCTGAACGTTAACGTTTTGCGTCGTGAAACTCTGGAAGATGCAGTT 101978 |||||||||||||| | ||||| || || || ||||||||||| |||||||||| ||| Sbjct 221 GAAGGTGGTCAACATTTAAACGTGAATGTGTTACGTCGTGAAACATTGGAAGATGCTGTT 162 Query 101979 AAGCATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTT 102038 || || || ||||||||||| || | || || |||||||| ||||| ||||| || ||| Sbjct 161 AAACACCCTGAAAAATATCCACAATTAACTATTCGTGTATCAGGTTACGCAGTGCGTTTT 102 Query 102039 AACTCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTCACCGAGAGTTTG 102098 ||||| | || || ||||| |||| ||||| | | ||||| || || || | ||| Sbjct 101 AACTCATTAACACCAGAACAACAGCAAGACGTATTAACACGTACATTTACAGAAACATTG 42 Query 102099 TAAT 102102 |||| Sbjct 41 TAAT 38 >seq487923 Length=1072 Score = 104 bits (114), Expect = 2e-17 Identities = 147/201 (73%), Gaps = 7/201 (3%) Strand=Plus/Plus Query 139516 ATCATGATTTATACTCGTCCATCTATGCAGTTTGACTACAATAAAGATGGTATGTCAGAT 139575 || |||||||||||| | || ||||| || ||| | |||| ||| ||||||||| Sbjct 333 ATTATGATTTATACTAGACCTTCTATTCAAAGTGAATGGAATACTAATGAAATGTCAGAT 392 Query 139576 TTCATGTGTACGAATACAGTACAATACCTGATTCGTGATAAGAAAGTCAATGCA-GTAGT 139634 || || ||||| |||| || ||| | ||||||||||| ||| | ||| | | || Sbjct 393 TTTATTTGTACTAATAATGTTCAAGTATTTATTCGTGATAATAAA-TTAATCTATATTGT 451 Query 139635 -AAGCATGCGCTCAAATGACGTGGTCTTCGGATTCCGTAATGATTATGCATGGCAAAAAT 139693 || || ||||||| ||||| || |||||||| ||||||||| |||||||| || | Sbjct 452 CAATCA-GCGCTCATGTGACGCAGTATTCGGATTTGGTAATGATTTAGCATGGCATAAGT 510 Query 139694 ACGTATTAGATAAATTAGTAT 139714 | |||| |||||||| ||| Sbjct 511 ATGTAT---ATAAATTACTAT 528 >seq351952 Length=416 Score = 100 bits (110), Expect = 3e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 101916 ATTGAAGGTGGTCAACACCTGAACGTTAACGTTTTGCGTCGTGAAACTCTGGAAGATGCA 101975 |||||||||||||||||| | |||||||| || || ||||||| | |||||| Sbjct 206 ATTGAAGGTGGTCAACACTTAAACGTTAATGTAATGAACCGTGAAATGTTATTGGATGCA 147 Query 101976 GTTAAGCATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGC 102035 | | |||| || || ||||| || | || || |||||||| ||||| ||||| || Sbjct 146 ATGGAAAATCCAGATAAGTATCCACAATTAACAATTCGTGTATCGGGTTACGCAGTACGA 87 Query 102036 TTTAACTCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTCAC 102088 |||||||| | ||| | ||||| ||| || || ||| | |||||||| || Sbjct 86 TTTAACTCGTTAACTGCAGAACAAAAGCAAGATGTAATCACACGTACCTTTAC 34 >seq509673 Length=441 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 23004 CATACTGGTGTTATTCCTTTTTGGAAACATTTTCAGACTGCTGTTAAATCATGTTCACAG 23063 ||||| ||| ||| || || | |||| || || ||||||||||||| || ||||| Sbjct 418 CATACGGGTTGTATCCCATTCTATAAACTGTTCCAAACTGCTGTTAAATGCTGCTCACAA 359 Query 23064 GGCGGAATTCGTGGTGGCGCTGCTACTGCTTATTATCCTATTTGGCATTTGGAAGTTGAA 23123 ||||| | ||||| || || || || | ||| || | |||||||| |||||||| Sbjct 358 GGCGGCGTCCGTGGCGGTGCAGCGACGTTGTTTTACCCATTATGGCATTTAGAAGTTGAG 299 Query 23124 AATCTTCTCGTTTTGAAAAATAACAAAGGTGTAGAAGAAAACCGCATTCGTCATATGGAT 23183 | | || ||||||||||| || || ||||| ||||| | |||||||||||| Sbjct 298 TCATTATTGGTACTGAAAAATAACCGCGGCGTGGAAGACAACCGTGTCCGTCATATGGAT 239 Query 23184 TATGGTGTTCA 23194 || || || || Sbjct 238 TACGGCGTACA 228 >seq326422 Length=2068 Score = 86.0 bits (94), Expect = 7e-12 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 93009 GCGGATATCGTATAATGG-TATTACCTCAGACTTCCAATCTGATGATGTGAGTTCGATTC 93067 |||| |||||||||||| ||||||||||| ||||||| ||||||||| | ||||||||| Sbjct 404 GCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTC 345 Query 93068 TCATTATCCGCTCCAATTTATG 93089 | | |||||||| |||||| Sbjct 344 CCGCTGCCCGCTCCAGTTTATG 323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531156680953280