Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_028819.1 Length=43190 Score E Sequences producing significant alignments: (Bits) Value seq461164 336 6e-88 seq488571 91.5 4e-14 seq338435 82.4 2e-11 >seq461164 Length=583 Score = 336 bits (372), Expect = 6e-88 Identities = 373/489 (76%), Gaps = 10/489 (2%) Strand=Plus/Minus Query 3482 TATGAATTGGTCAGAGCTAGGAAAGAAAGTTGCGGATTTTGCACCGTTACTAGGTAGCGC 3541 ||||||||||||||| |||| || || ||||| |||||||||||| | |||| || Sbjct 485 TATGAATTGGTCAGACTTAGGTAAAAAGGTTGCTGATTTTGCACCGCTTTTAGGGTCAGC 426 Query 3542 TTTAGGTCCTGTGGGCGCAGGTGTCGGTGCTTTAATATCGTCAGAGTTTGGCACAGAAAA 3601 ||||| || || || || ||||| || || |||||||||||||||||||| || ||||| Sbjct 425 ATTAGGCCCAGTCGGTGCGGGTGTTGGCGCGTTAATATCGTCAGAGTTTGGTACTGAAAA 366 Query 3602 TACGCCAGACGCTATCAATAGTTTTATAACTGCCAATCCTGAAGCGCAAGTGAAGTTAAG 3661 |||||||||||||| || || || || |||| |||||| || |||||||| ||| | | Sbjct 365 CACGCCAGACGCTATTAACAGCTTCATTACTGGCAATCCAGAGGCGCAAGTTAAGCTCCG 306 Query 3662 AGATATTGAATTAACTCACAAAACTCAATTGCAGGAAATTAGACTTAAAACCTTGCAGGC 3721 || ||||| |||| || ||| | ||| | || |||||| |||| |||| |||| || Sbjct 305 TGAAATTGAGCTAACACATAAATCACAACTTCAAAAAATTAAACTTGAAACTCTGCAAGC 246 Query 3722 TGAATTAAGTGACAAGCAAAATGCAAGAGCAG-CGCATGAGA-AAAGTAAAATGCCAGCC 3779 ||| ||||| |||||| ||| ||||| |||| |||| ||| |||| ||||||||||| Sbjct 245 TGAGTTAAGCGACAAGGCAAACGCAAG-GCAGGCGCAC-AGACAAAGCAAAATGCCAGCT 188 Query 3780 TATTTAAGCGTAGGGTTAACTTTAATCAT---AATGTTGATAGTGTTTATGTTGTTTTGG 3836 ||||||||| | ||| | || || | || | ||| || | || ||| |||| Sbjct 187 TATTTAAGCTTTGGGCTTACAATATTGATTGGTACTTTGGTATTCTTGCTGT--TTTTAC 130 Query 3837 GTTGATGTGCCAAGCGGTA-GCCGTGAGGTGTTATTTATGCTGCTTGGTGTTGTTATTAA 3895 ||||||||||| |||| | ||||| || ||||||||||| | || ||||| |||| Sbjct 129 GTTGATGTGCCGGAGGGTATGTCGTGAAGTCTTATTTATGCTTTTGGGCGTTGTAGTTAA 70 Query 3896 AGAATGGGGTAGCGCTATGCAATTCTGGTTTGGCACCACTCGAAGTAGTCAAGATAAAAC 3955 ||| ||||| ||||| ||||||||||||||||| || || |||||||| |||||||| Sbjct 69 AGAGTGGGGCAGCGCAATGCAATTCTGGTTTGGAACAACAAGAAGTAGTGCTGATAAAAC 10 Query 3956 ACGATTGAT 3964 |||| || Sbjct 9 TAGATTAAT 1 >seq488571 Length=869 Score = 91.5 bits (100), Expect = 4e-14 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 37444 AAATACCTAGTTAACGTATCAGTGTTAACAACGGGCTTTGATGCGCCTCACGTTGACGTT 37503 |||||| | |||||||| | || ||||| || ||||| ||||| |||||||| ||| || Sbjct 593 AAATACATTGTTAACGTTGCCGTATTAACCACAGGCTTCGATGCTCCTCACGTCGACCTT 534 Query 37504 ATAGCTATTTTGCGAGCTACTGAGTCAGTCGGCTTGATGCAACAAATAATAGGGCGAGGT 37563 || || |||||||| | || | || || || | | ||||| || ||||| ||||| Sbjct 533 ATCGCAATTTTGCGCCCCACCGCATCGGTGAGCCTATTCCAACAGATGATAGGTCGAGGA 474 Query 37564 TTGCGCCTAGACGATGGTAAAGAGGATTGTTTAGT 37598 || ||| | | | ||||| ||||||||||| Sbjct 473 TTACGCTTGGCCCCCAATAAAGCAGATTGTTTAGT 439 >seq338435 Length=2541 Score = 82.4 bits (90), Expect = 2e-11 Identities = 169/247 (68%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 37289 AAAACCGCAAAGGCGTTATGTTCTTTGCGGCCACCATTCAACATGCTGAAGAAATAATGG 37348 |||||||| |||| ||||| | ||||| || || || || || ||||||| | Sbjct 850 AAAACCGCCAAGGTATTATGATTTTTGCCGCTACGGTTATGCACGCACAAGAAATTTTAA 909 Query 37349 CATCGTTACCGC--CAGCTAAAAGCAAGATAGTAACCGGTAAAACATCGAGCGCAGACCG 37406 | ||||| | |||| ||||| || | || ||| | ||| | | || || Sbjct 910 GCTATTTACCTCATCAGC--AAAGCGCCTTAATTACAGGTGACACACCTAATAGCGAACG 967 Query 37407 TGAAAAGATAATATCTGACTTTAAGAATCAAGCCTTTAAA-TACCTAGTTAACGTATCAG 37465 || || ||||| | ||||| | ||||| ||||| ||||| ||||| |||| | Sbjct 968 CGATAAAATAATTAAGCAATTTAA-AGCCAAGCAATTAAAATACCTGGTTAATATATCGG 1026 Query 37466 TGTTAACAACGGGCTTTGATGCGCCTCACGTTGACGTTATAGCTATTTTGCGAGCTACTG 37525 | | || || ||||||||||| ||||| ||||| |||| |||||||| || |||||| Sbjct 1027 TACTCACCACCGGCTTTGATGCACCTCATGTTGATTTTATTGCTATTTTACGCCCTACTG 1086 Query 37526 AGTCAGT 37532 |||| || Sbjct 1087 AGTCGGT 1093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137224694432448