Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_028819.1
Length=43190
Score E
Sequences producing significant alignments: (Bits) Value
seq461164 336 6e-88
seq488571 91.5 4e-14
seq338435 82.4 2e-11
>seq461164
Length=583
Score = 336 bits (372), Expect = 6e-88
Identities = 373/489 (76%), Gaps = 10/489 (2%)
Strand=Plus/Minus
Query 3482 TATGAATTGGTCAGAGCTAGGAAAGAAAGTTGCGGATTTTGCACCGTTACTAGGTAGCGC 3541
||||||||||||||| |||| || || ||||| |||||||||||| | |||| ||
Sbjct 485 TATGAATTGGTCAGACTTAGGTAAAAAGGTTGCTGATTTTGCACCGCTTTTAGGGTCAGC 426
Query 3542 TTTAGGTCCTGTGGGCGCAGGTGTCGGTGCTTTAATATCGTCAGAGTTTGGCACAGAAAA 3601
||||| || || || || ||||| || || |||||||||||||||||||| || |||||
Sbjct 425 ATTAGGCCCAGTCGGTGCGGGTGTTGGCGCGTTAATATCGTCAGAGTTTGGTACTGAAAA 366
Query 3602 TACGCCAGACGCTATCAATAGTTTTATAACTGCCAATCCTGAAGCGCAAGTGAAGTTAAG 3661
|||||||||||||| || || || || |||| |||||| || |||||||| ||| | |
Sbjct 365 CACGCCAGACGCTATTAACAGCTTCATTACTGGCAATCCAGAGGCGCAAGTTAAGCTCCG 306
Query 3662 AGATATTGAATTAACTCACAAAACTCAATTGCAGGAAATTAGACTTAAAACCTTGCAGGC 3721
|| ||||| |||| || ||| | ||| | || |||||| |||| |||| |||| ||
Sbjct 305 TGAAATTGAGCTAACACATAAATCACAACTTCAAAAAATTAAACTTGAAACTCTGCAAGC 246
Query 3722 TGAATTAAGTGACAAGCAAAATGCAAGAGCAG-CGCATGAGA-AAAGTAAAATGCCAGCC 3779
||| ||||| |||||| ||| ||||| |||| |||| ||| |||| |||||||||||
Sbjct 245 TGAGTTAAGCGACAAGGCAAACGCAAG-GCAGGCGCAC-AGACAAAGCAAAATGCCAGCT 188
Query 3780 TATTTAAGCGTAGGGTTAACTTTAATCAT---AATGTTGATAGTGTTTATGTTGTTTTGG 3836
||||||||| | ||| | || || | || | ||| || | || ||| ||||
Sbjct 187 TATTTAAGCTTTGGGCTTACAATATTGATTGGTACTTTGGTATTCTTGCTGT--TTTTAC 130
Query 3837 GTTGATGTGCCAAGCGGTA-GCCGTGAGGTGTTATTTATGCTGCTTGGTGTTGTTATTAA 3895
||||||||||| |||| | ||||| || ||||||||||| | || ||||| ||||
Sbjct 129 GTTGATGTGCCGGAGGGTATGTCGTGAAGTCTTATTTATGCTTTTGGGCGTTGTAGTTAA 70
Query 3896 AGAATGGGGTAGCGCTATGCAATTCTGGTTTGGCACCACTCGAAGTAGTCAAGATAAAAC 3955
||| ||||| ||||| ||||||||||||||||| || || |||||||| ||||||||
Sbjct 69 AGAGTGGGGCAGCGCAATGCAATTCTGGTTTGGAACAACAAGAAGTAGTGCTGATAAAAC 10
Query 3956 ACGATTGAT 3964
|||| ||
Sbjct 9 TAGATTAAT 1
>seq488571
Length=869
Score = 91.5 bits (100), Expect = 4e-14
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 37444 AAATACCTAGTTAACGTATCAGTGTTAACAACGGGCTTTGATGCGCCTCACGTTGACGTT 37503
|||||| | |||||||| | || ||||| || ||||| ||||| |||||||| ||| ||
Sbjct 593 AAATACATTGTTAACGTTGCCGTATTAACCACAGGCTTCGATGCTCCTCACGTCGACCTT 534
Query 37504 ATAGCTATTTTGCGAGCTACTGAGTCAGTCGGCTTGATGCAACAAATAATAGGGCGAGGT 37563
|| || |||||||| | || | || || || | | ||||| || ||||| |||||
Sbjct 533 ATCGCAATTTTGCGCCCCACCGCATCGGTGAGCCTATTCCAACAGATGATAGGTCGAGGA 474
Query 37564 TTGCGCCTAGACGATGGTAAAGAGGATTGTTTAGT 37598
|| ||| | | | ||||| |||||||||||
Sbjct 473 TTACGCTTGGCCCCCAATAAAGCAGATTGTTTAGT 439
>seq338435
Length=2541
Score = 82.4 bits (90), Expect = 2e-11
Identities = 169/247 (68%), Gaps = 6/247 (2%)
Strand=Plus/Plus
Query 37289 AAAACCGCAAAGGCGTTATGTTCTTTGCGGCCACCATTCAACATGCTGAAGAAATAATGG 37348
|||||||| |||| ||||| | ||||| || || || || || ||||||| |
Sbjct 850 AAAACCGCCAAGGTATTATGATTTTTGCCGCTACGGTTATGCACGCACAAGAAATTTTAA 909
Query 37349 CATCGTTACCGC--CAGCTAAAAGCAAGATAGTAACCGGTAAAACATCGAGCGCAGACCG 37406
| ||||| | |||| ||||| || | || ||| | ||| | | || ||
Sbjct 910 GCTATTTACCTCATCAGC--AAAGCGCCTTAATTACAGGTGACACACCTAATAGCGAACG 967
Query 37407 TGAAAAGATAATATCTGACTTTAAGAATCAAGCCTTTAAA-TACCTAGTTAACGTATCAG 37465
|| || ||||| | ||||| | ||||| ||||| ||||| ||||| |||| |
Sbjct 968 CGATAAAATAATTAAGCAATTTAA-AGCCAAGCAATTAAAATACCTGGTTAATATATCGG 1026
Query 37466 TGTTAACAACGGGCTTTGATGCGCCTCACGTTGACGTTATAGCTATTTTGCGAGCTACTG 37525
| | || || ||||||||||| ||||| ||||| |||| |||||||| || ||||||
Sbjct 1027 TACTCACCACCGGCTTTGATGCACCTCATGTTGATTTTATTGCTATTTTACGCCCTACTG 1086
Query 37526 AGTCAGT 37532
|||| ||
Sbjct 1087 AGTCGGT 1093
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 137224694432448
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |