Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq498792 123 8e-24 seq479375 89.7 2e-13 seq471061 84.2 7e-12 >seq498792 Length=554 Score = 123 bits (136), Expect = 8e-24 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 40194 GCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGAT 40253 |||| || || || || ||||| ||||| |||||||| | || ||| ||||| || | Sbjct 1 GCATCGATACCCGTTCCGGGTTAAGGAATCGCTCGAACAGCAGGTCGTATTCCAGAGGGT 60 Query 40254 CGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAG 40313 | ||||| || ||| | ||||| |||||||| ||||| |||| || || |||| Sbjct 61 CAAGGTCAGTAATCTTTTGCACATAGGCCACCAGCGACCCGGCACCCGAACCACGGCCAG 120 Query 40314 GACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGT 40373 |||| || |||||||| ||||||||| ||| ||||| |||| |||||||| Sbjct 121 GACCTACTGGTACGCCGTTACTCTTGGCCCACTGGATAAAGTCCATCACGATCAGGAAGT 180 Query 40374 AGGACGGGAAGCCCATCTGGATGATCATGTCGATCTCG 40411 | |||||| ||||||||||| || || || | |||| Sbjct 181 AACCCGGGAACCCCATCTGGATAATGATATCCAGCTCG 218 >seq479375 Length=664 Score = 89.7 bits (98), Expect = 2e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 40175 AAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATG 40234 ||||||| ||| | ||||||||||| || || || ||||||| ||| || ||||| | Sbjct 94 AAGTCGACGTCGAAATCGGGCATGGATACACGTTCAGGGTTCAAGAAACGTTCGAACAGT 153 Query 40235 AGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCG 40294 | ||| || |||||||| | |||||| || || ||| ||||| | ||| || Sbjct 154 AAATCGTATTCTAGTGGATCTAAGTCGGTAATTTTAAGCGCGTATGCGACTAACGATCCC 213 Query 40295 GCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAG 40354 || | || || || || ||||| || | |||||| || ||| |||| || || Sbjct 214 GCACCAGAACCACGGCCGGGACCAACTGGAATGCCGTTGTCTTTGCCCCACTGAATAAAC 273 Query 40355 TCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGG 40393 || |||| |||||||| ||||| ||||||||| Sbjct 274 TCCATCACGATAAGGAAGTAACCGGGGAAACCCATCTGG 312 >seq471061 Length=546 Score = 84.2 bits (92), Expect = 7e-12 Identities = 149/216 (69%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 40175 AAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCT-CGAAGAT 40233 ||||| || || | |||||||||||||| ||||| ||||| | || |||| | || | Sbjct 60 AAGTCAATATCGAAATCGGGCATGGACACACGCTCAGGGTTTAAAAAGCGCTACAAATAA 119 Query 40234 GAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACC 40293 | ||| | | || ||||||||||| || ||| | || || || || || || Sbjct 120 TAAGTCGTAATGAATAGGGTCGAGGTCGGTAATATTGAGCGAATAAGCAACGAGTGAGCC 179 Query 40294 GGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAA 40353 || | || || || ||||||||||| ||||| || | || ||||| | ||| || Sbjct 180 TGCACCAGAACCACGACCAGGACCGACTGGTACGCCATTGGCTTTTGCCCAACGGATAAA 239 Query 40354 GTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCAT 40389 ||| ||||| |||||||| || |||||||| Sbjct 240 GTCCATGACGATGAGGAAGTAACCAGGAAAGCCCAT 275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159405410127348