Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_028829.1 Length=248088 Score E Sequences producing significant alignments: (Bits) Value seq516580 172 9e-38 seq449735 167 4e-36 seq511551 107 3e-18 seq509673 107 3e-18 seq453744 102 1e-16 seq250551 91.5 2e-13 seq450559 89.7 8e-13 >seq516580 Length=413 Score = 172 bits (190), Expect = 9e-38 Identities = 160/201 (80%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 125889 TTGATTGAGACGACGCCTAAGTTATTACGACCATCGAATACCGTTTCACCATCTTC--GT 125946 |||||||| || || || ||||||||||| ||||| |||| | |||||| | | | Sbjct 102 TTGATTGATACAACACCCAAGTTATTACGTCCATCATATACTGGTTCACCTGTTACTGGG 161 Query 125947 TCTT-CCAGTCACCCAAGAATGAGCGACAGCCCATTGGAGACTTAAACCCACCAGTCGTT 126005 ||| ||| || | |||||| |||||||||||||| |||| ||||||||||| ||| Sbjct 162 TCTGACCATTCGTGTAGGAATGAACGACAGCCCATTGGGTACTTGAACCCACCAGTAGTT 221 Query 126006 TCAACTAGTTTGTCATAGTTCAAAATGTCTGGGTACATACGCTTACTTGCACATTCAAGA 126065 ||||||| ||||| ||||||||||| ||||| ||||||||||| | |||||||||| Sbjct 222 TCAACTAACTTGTCGTAGTTCAAAATATCTGGATACATACGCTTGGTAGCACATTCAACT 281 Query 126066 GCTAACTTTTTGATGCCGTAG 126086 ||||||| ||||||| ||||| Sbjct 282 GCTAACTGTTTGATGTCGTAG 302 >seq449735 Length=3187 Score = 167 bits (184), Expect = 4e-36 Identities = 291/411 (71%), Gaps = 18/411 (4%) Strand=Plus/Minus Query 236259 TACACTGTAGTCAAGATGACGAATACGGTTTTCTTCAACACCTTTGTTGTTCTTCAGAAC 236318 ||| | ||| || | |||||| | ||||| || ||||| || ||| || || || || Sbjct 426 TACGCCGTAATCTAAATGACGCACGCGGTTGTCATCAACCCCGCGGTTATTTTTAAGTAC 367 Query 236319 TAACAGTTTTTCAACTTCTAAGTGCCAAATCGGGTAAGTTAGAGTCGCAGCACCACCACG 236378 |||||| ||||| |||||||| ||||||| |||||| | || || || || ||||| Sbjct 366 TAACAGGTTTTCTACTTCTAAATGCCAAAGCGGGTAGAACAAGGTTGCTGCGCCGCCACG 307 Query 236379 TACACCACCTTGAGAACACGATTTAACCGCAGTTTGAAAGTGTTTCCAGAATGGAATTAC 236438 |||||| ||||| ||||| ||||||||| ||||||||||| || | || ||||| Sbjct 306 TACACCGCCTTGCGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTATAAAAAGGAATACA 247 Query 236439 ACCAGTGTG--ACGAATCTCACCTGAACGAA--CGACTGCCCCTTCAGCACGAATCGCAC 236494 ||| || || ||| || | || |||| | || ||| | |||||||| || Sbjct 246 ACCCGTATGGTACGCTTCGCCATTG--CGAATGTGGCTACCCAGT--GCACGAATGCGAC 191 Query 236495 CGCCATTCACACCGATACCTGCACGCTTACTA-ATGTAACTTACAATTGATTTAG-CCAC 236552 | | || | || || || ||||| || | | | ||| | ||||||| || | | Sbjct 190 CTGCGTTAATGCCAATGCCGGCACG-TTGCGATACGTATTTAACAATTG---CAGACGAG 135 Query 236553 TT--CATTGATTGAATGCAAAG-AGTCGCCTGATTCAATCTTAACACACGAACTAAACTG 236609 | | || ||||||| ||| | |||||| | || || |||||||| |||||||| Sbjct 134 GTGGCGTTAATTGAAT-CAAGGCTGTCGCCACACTCTATTAATACACACGAGCTAAACTG 76 Query 236610 GCGTGTCGGGGTACGAACGCCTGCCATAATCGGTGTCGGTAATGAAAGTTT 236660 |||||| || |||||||| ||||||||||| || || |||| ||||| ||| Sbjct 75 GCGTGTTGGCGTACGAACACCTGCCATAATTGGCGTAGGTAGTGAAATTTT 25 >seq511551 Length=634 Score = 107 bits (118), Expect = 3e-18 Identities = 185/269 (69%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 125973 CAGCCCATTGGAGACTTAAACCCACCAGTCGTTTCAACTAGTTTGTCATAGTTCAAAATG 126032 |||||||| | |||||| |||||||| || || | || || ||||| | ||| Sbjct 399 CAGCCCATGCTTGCCTTAAAACCACCAGTAACCTCTACAATCTTATCGTAGTTGATAATA 340 Query 126033 TCTGGGTACATACGCTTACTTGCACATTCAAGAGCTAACTTTTTGATGCCGTAGCACGGG 126092 || ||||||||||||||||| ||||| || |||||||||| ||| || ||| ||| Sbjct 339 TCAGGGTACATACGCTTACTGGCACACTCTAGAGCTAACTGTTTAATATTATAGTTTGGG 280 Query 126093 TCGCCTTCTTTCAGATTCACGCCGTCTCTCAATGTGAAAACAAGCTTAGGGAAAATAGCA 126152 || | | ||| | || || |||||| | | || | | |||||||||||| | || Sbjct 279 TCTTCCTGTTTAAAGTTGACACCGTCTTTAATAGTTAGGATAAGCTTAGGGAATACCGCT 220 Query 126153 GTTTTCTTAGTCTTACCTAGACCTGCAATACGATTCTGAAGAATACTTTTTTGAATAAGT 126212 || |||| | ||||| ||| |||||| || ||| || ||| ||||| || Sbjct 219 GTCCTCTTTGATGCACCTAAGCCTTTAATACGCACCTCAAGGATGGATTTCTGAATTAGC 160 Query 126213 TTTTCTTCCCACGACGTACCTAACCCGAA 126241 || ||||| | |||||||| || || Sbjct 159 TTAGACTCCCAACAAGTACCTAAACCAAA 131 >seq509673 Length=441 Score = 107 bits (118), Expect = 3e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 236259 TACACTGTAGTCAAGATGACGAATACGGTTTTCTTCAACACCTTTGTTGTTCTTCAGAAC 236318 ||| | ||| || | |||||| | |||||| ||||| || || ||| || ||||| || Sbjct 230 TACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTATTTTTCAGTAC 289 Query 236319 TAACAGTTTTTCAACTTCTAAGTGCCAAATCGGGTAAGTTAGAGTCGCAGCACCACCACG 236378 || | | ||||||||||| ||||| | |||||| | ||||| ||||| ||||| Sbjct 290 CAATAATGACTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCGCTGCACCGCCACG 349 Query 236379 TACACCACCTTGAGAACACGATTTAACCGCAGTTTGAAAGTGTTTCCAGAATGGAAT 236435 || || ||||| || || ||||||| |||||||| || |||| ||||||| || Sbjct 350 GACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTTATAGAATGGGAT 406 >seq453744 Length=292 Score = 102 bits (112), Expect = 1e-16 Identities = 143/193 (74%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 58626 TCATGCGTTGCACGTGCTGGGCAGATATTCCAACCACCGCGACGTGTGTATAACGCT-GT 58684 ||||| |||| | |||||||| |||| |||||| |||||||| || ||||| || Sbjct 84 TCATGTGTTGATCTAGCTGGGCAAATATCAATACCACCTCGACGTGTATA-AACGCAAGT 142 Query 58685 TACCATAAGCTCTTGTGGGTCGAACTTATCAAGT-AACGCTTTGTAAATCATTTCA-ACA 58742 |||||||||||||| || | ||||| |||| | ||||| ||| ||||||| ||| | | Sbjct 143 TACCATAAGCTCTTCAGGCTGAAACTTGTCAAATAAACGC-TTGAAAATCATCTCACATA 201 Query 58743 CATTCTTCATGGAAATGATTCTCTTTACGGAATGACACAATGTATTGCATGAGACTGTCA 58802 | |||||| || ||||| | ||||| ||||| |||||||| || | || ||| Sbjct 202 C-TTCTTCGTGAAAATGGTCTTCTTTGCGGAAACTAACAATGTACTGGAATAGTGATTCA 260 Query 58803 ATAGTTGGTGTTT 58815 ||||||| ||| Sbjct 261 GCAGTTGGTATTT 273 >seq250551 Length=853 Score = 91.5 bits (100), Expect = 2e-13 Identities = 230/345 (67%), Gaps = 6/345 (2%) Strand=Plus/Minus Query 125186 ACACTGATCAATCGGGGTATTCGTACCGAAGTAAGCTACTTTAGTGTAAGCATAATCCCA 125245 ||||| |||||| || ||||| || ||| | || | ||| | ||| |||||||| Sbjct 622 ACACTCATCAATGGGAGTATTGGTGCCGTAATATGGCACTCGGCTATAACTGTAATCCCA 563 Query 125246 TACGCGCTCTAGACCTTTGATGTTGTCTCGCATATTCGGGAACTCAGCATAACAGATGAA 125305 ||| || || ||| || |||| |||| || || | || | ||||| || || Sbjct 562 AACGTTTTCGAGCGCTTCAATATTGTGCTGCATGTTGGGATATTCGCCGTAACAAATAAA 503 Query 125306 ACCACCGTTTGC-ATGAATTGGGTATGCAGCTTCAAAATCAATTTTCTCAAATGGGTTCA 125364 || || || || ||| | || || | |||||||||||| || ||||| || || | Sbjct 502 CCCGCCATTGGCGATGGCT-GGATAAGGTTGTTCAAAATCAATCTTATCAAAAGGATTTA 444 Query 125365 CTTTCTTGAACACGTCTAAGTGAAACGAGTTTGTGTAATAGTCTTTGTCATTGATACCTG 125424 ||||||| || |||||||| || || ||||||||| ||||||| | | ||||| Sbjct 443 CTTTCTTTTCAACATCTAAGTGGAAGCTATTGGTGTAATAGCCTTTGTCGGTCACACCTG 384 Query 125425 TAATAACACCGTATTTCTCTTGG--TCGAGACGACAGAAACGATCACATAGCGATTCACT 125482 | ||| || | | ||| || || | || ||||| |||| |||||| Sbjct 383 CCACAACGCCAAACT--GGGTGGTATCTAGCTGGCAAAAACGGCTGCATAAGTTTTCACT 326 Query 125483 TGGTGTACTGTACAGACTGAAACCGTAGCCCGTCAGTTCTTTCCA 125527 ||| |||||||| | ||| || || || || || || |||||| Sbjct 325 TGGGGTACTGTATAAACTAAAGCCATAACCTGTTTCTTGTTTCCA 281 >seq450559 Length=633 Score = 89.7 bits (98), Expect = 8e-13 Identities = 142/199 (71%), Gaps = 10/199 (5%) Strand=Plus/Minus Query 126435 GCTAGGACTTCGTCGATTCTATTGATCGTGTTACCGCCGTAGATATGGCTACTTACTTGC 126494 |||| ||||||||||| | || |||||| |||| || || |||||||| ||| || Sbjct 207 GCTAACACTTCGTCGATACGGTTAATCGTGGTACCACCATAAATATGGCTCGCTACCTGA 148 Query 126495 TGAATAATCTGAG---TTACAACAGTGGCAGCAGTGCTAATACTGTTTGGTTCTTCGATT 126551 |||||| || | | ||| ||||||||| || || || || || ||| ||| Sbjct 147 GCAATAATTTGCGCCGTAACAGCAGTGGCAGT--TGATA-TAGACTTAGGCGGTTCTATT 91 Query 126552 TCAGCATTACCCATTTTGAAGCC--GCCTTCAAACATGCCTTTGATATCAATAAGCATAC 126609 ||||||||||||||||| || || | || |||||||| | |||||| ||||| | Sbjct 90 TCAGCATTACCCATTTTAAAACCATGAGTT--AACATGCCGGCCAAATCAATTAGCATGC 33 Query 126610 AGTTGAATTGCGGGAATAA 126628 |||| || |||||| || Sbjct 32 AGTTAAACATCGGGAAAAA 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 788539611196160