Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_028829.1
Length=248088
Score E
Sequences producing significant alignments: (Bits) Value
seq516580 172 9e-38
seq449735 167 4e-36
seq511551 107 3e-18
seq509673 107 3e-18
seq453744 102 1e-16
seq250551 91.5 2e-13
seq450559 89.7 8e-13
>seq516580
Length=413
Score = 172 bits (190), Expect = 9e-38
Identities = 160/201 (80%), Gaps = 3/201 (1%)
Strand=Plus/Plus
Query 125889 TTGATTGAGACGACGCCTAAGTTATTACGACCATCGAATACCGTTTCACCATCTTC--GT 125946
|||||||| || || || ||||||||||| ||||| |||| | |||||| | | |
Sbjct 102 TTGATTGATACAACACCCAAGTTATTACGTCCATCATATACTGGTTCACCTGTTACTGGG 161
Query 125947 TCTT-CCAGTCACCCAAGAATGAGCGACAGCCCATTGGAGACTTAAACCCACCAGTCGTT 126005
||| ||| || | |||||| |||||||||||||| |||| ||||||||||| |||
Sbjct 162 TCTGACCATTCGTGTAGGAATGAACGACAGCCCATTGGGTACTTGAACCCACCAGTAGTT 221
Query 126006 TCAACTAGTTTGTCATAGTTCAAAATGTCTGGGTACATACGCTTACTTGCACATTCAAGA 126065
||||||| ||||| ||||||||||| ||||| ||||||||||| | ||||||||||
Sbjct 222 TCAACTAACTTGTCGTAGTTCAAAATATCTGGATACATACGCTTGGTAGCACATTCAACT 281
Query 126066 GCTAACTTTTTGATGCCGTAG 126086
||||||| ||||||| |||||
Sbjct 282 GCTAACTGTTTGATGTCGTAG 302
>seq449735
Length=3187
Score = 167 bits (184), Expect = 4e-36
Identities = 291/411 (71%), Gaps = 18/411 (4%)
Strand=Plus/Minus
Query 236259 TACACTGTAGTCAAGATGACGAATACGGTTTTCTTCAACACCTTTGTTGTTCTTCAGAAC 236318
||| | ||| || | |||||| | ||||| || ||||| || ||| || || || ||
Sbjct 426 TACGCCGTAATCTAAATGACGCACGCGGTTGTCATCAACCCCGCGGTTATTTTTAAGTAC 367
Query 236319 TAACAGTTTTTCAACTTCTAAGTGCCAAATCGGGTAAGTTAGAGTCGCAGCACCACCACG 236378
|||||| ||||| |||||||| ||||||| |||||| | || || || || |||||
Sbjct 366 TAACAGGTTTTCTACTTCTAAATGCCAAAGCGGGTAGAACAAGGTTGCTGCGCCGCCACG 307
Query 236379 TACACCACCTTGAGAACACGATTTAACCGCAGTTTGAAAGTGTTTCCAGAATGGAATTAC 236438
|||||| ||||| ||||| ||||||||| ||||||||||| || | || |||||
Sbjct 306 TACACCGCCTTGCGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTATAAAAAGGAATACA 247
Query 236439 ACCAGTGTG--ACGAATCTCACCTGAACGAA--CGACTGCCCCTTCAGCACGAATCGCAC 236494
||| || || ||| || | || |||| | || ||| | |||||||| ||
Sbjct 246 ACCCGTATGGTACGCTTCGCCATTG--CGAATGTGGCTACCCAGT--GCACGAATGCGAC 191
Query 236495 CGCCATTCACACCGATACCTGCACGCTTACTA-ATGTAACTTACAATTGATTTAG-CCAC 236552
| | || | || || || ||||| || | | | ||| | ||||||| || | |
Sbjct 190 CTGCGTTAATGCCAATGCCGGCACG-TTGCGATACGTATTTAACAATTG---CAGACGAG 135
Query 236553 TT--CATTGATTGAATGCAAAG-AGTCGCCTGATTCAATCTTAACACACGAACTAAACTG 236609
| | || ||||||| ||| | |||||| | || || |||||||| ||||||||
Sbjct 134 GTGGCGTTAATTGAAT-CAAGGCTGTCGCCACACTCTATTAATACACACGAGCTAAACTG 76
Query 236610 GCGTGTCGGGGTACGAACGCCTGCCATAATCGGTGTCGGTAATGAAAGTTT 236660
|||||| || |||||||| ||||||||||| || || |||| ||||| |||
Sbjct 75 GCGTGTTGGCGTACGAACACCTGCCATAATTGGCGTAGGTAGTGAAATTTT 25
>seq511551
Length=634
Score = 107 bits (118), Expect = 3e-18
Identities = 185/269 (69%), Gaps = 0/269 (0%)
Strand=Plus/Minus
Query 125973 CAGCCCATTGGAGACTTAAACCCACCAGTCGTTTCAACTAGTTTGTCATAGTTCAAAATG 126032
|||||||| | |||||| |||||||| || || | || || ||||| | |||
Sbjct 399 CAGCCCATGCTTGCCTTAAAACCACCAGTAACCTCTACAATCTTATCGTAGTTGATAATA 340
Query 126033 TCTGGGTACATACGCTTACTTGCACATTCAAGAGCTAACTTTTTGATGCCGTAGCACGGG 126092
|| ||||||||||||||||| ||||| || |||||||||| ||| || ||| |||
Sbjct 339 TCAGGGTACATACGCTTACTGGCACACTCTAGAGCTAACTGTTTAATATTATAGTTTGGG 280
Query 126093 TCGCCTTCTTTCAGATTCACGCCGTCTCTCAATGTGAAAACAAGCTTAGGGAAAATAGCA 126152
|| | | ||| | || || |||||| | | || | | |||||||||||| | ||
Sbjct 279 TCTTCCTGTTTAAAGTTGACACCGTCTTTAATAGTTAGGATAAGCTTAGGGAATACCGCT 220
Query 126153 GTTTTCTTAGTCTTACCTAGACCTGCAATACGATTCTGAAGAATACTTTTTTGAATAAGT 126212
|| |||| | ||||| ||| |||||| || ||| || ||| ||||| ||
Sbjct 219 GTCCTCTTTGATGCACCTAAGCCTTTAATACGCACCTCAAGGATGGATTTCTGAATTAGC 160
Query 126213 TTTTCTTCCCACGACGTACCTAACCCGAA 126241
|| ||||| | |||||||| || ||
Sbjct 159 TTAGACTCCCAACAAGTACCTAAACCAAA 131
>seq509673
Length=441
Score = 107 bits (118), Expect = 3e-18
Identities = 130/177 (73%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 236259 TACACTGTAGTCAAGATGACGAATACGGTTTTCTTCAACACCTTTGTTGTTCTTCAGAAC 236318
||| | ||| || | |||||| | |||||| ||||| || || ||| || ||||| ||
Sbjct 230 TACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTATTTTTCAGTAC 289
Query 236319 TAACAGTTTTTCAACTTCTAAGTGCCAAATCGGGTAAGTTAGAGTCGCAGCACCACCACG 236378
|| | | ||||||||||| ||||| | |||||| | ||||| ||||| |||||
Sbjct 290 CAATAATGACTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCGCTGCACCGCCACG 349
Query 236379 TACACCACCTTGAGAACACGATTTAACCGCAGTTTGAAAGTGTTTCCAGAATGGAAT 236435
|| || ||||| || || ||||||| |||||||| || |||| ||||||| ||
Sbjct 350 GACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTTATAGAATGGGAT 406
>seq453744
Length=292
Score = 102 bits (112), Expect = 1e-16
Identities = 143/193 (74%), Gaps = 6/193 (3%)
Strand=Plus/Plus
Query 58626 TCATGCGTTGCACGTGCTGGGCAGATATTCCAACCACCGCGACGTGTGTATAACGCT-GT 58684
||||| |||| | |||||||| |||| |||||| |||||||| || ||||| ||
Sbjct 84 TCATGTGTTGATCTAGCTGGGCAAATATCAATACCACCTCGACGTGTATA-AACGCAAGT 142
Query 58685 TACCATAAGCTCTTGTGGGTCGAACTTATCAAGT-AACGCTTTGTAAATCATTTCA-ACA 58742
|||||||||||||| || | ||||| |||| | ||||| ||| ||||||| ||| | |
Sbjct 143 TACCATAAGCTCTTCAGGCTGAAACTTGTCAAATAAACGC-TTGAAAATCATCTCACATA 201
Query 58743 CATTCTTCATGGAAATGATTCTCTTTACGGAATGACACAATGTATTGCATGAGACTGTCA 58802
| |||||| || ||||| | ||||| ||||| |||||||| || | || |||
Sbjct 202 C-TTCTTCGTGAAAATGGTCTTCTTTGCGGAAACTAACAATGTACTGGAATAGTGATTCA 260
Query 58803 ATAGTTGGTGTTT 58815
||||||| |||
Sbjct 261 GCAGTTGGTATTT 273
>seq250551
Length=853
Score = 91.5 bits (100), Expect = 2e-13
Identities = 230/345 (67%), Gaps = 6/345 (2%)
Strand=Plus/Minus
Query 125186 ACACTGATCAATCGGGGTATTCGTACCGAAGTAAGCTACTTTAGTGTAAGCATAATCCCA 125245
||||| |||||| || ||||| || ||| | || | ||| | ||| ||||||||
Sbjct 622 ACACTCATCAATGGGAGTATTGGTGCCGTAATATGGCACTCGGCTATAACTGTAATCCCA 563
Query 125246 TACGCGCTCTAGACCTTTGATGTTGTCTCGCATATTCGGGAACTCAGCATAACAGATGAA 125305
||| || || ||| || |||| |||| || || | || | ||||| || ||
Sbjct 562 AACGTTTTCGAGCGCTTCAATATTGTGCTGCATGTTGGGATATTCGCCGTAACAAATAAA 503
Query 125306 ACCACCGTTTGC-ATGAATTGGGTATGCAGCTTCAAAATCAATTTTCTCAAATGGGTTCA 125364
|| || || || ||| | || || | |||||||||||| || ||||| || || |
Sbjct 502 CCCGCCATTGGCGATGGCT-GGATAAGGTTGTTCAAAATCAATCTTATCAAAAGGATTTA 444
Query 125365 CTTTCTTGAACACGTCTAAGTGAAACGAGTTTGTGTAATAGTCTTTGTCATTGATACCTG 125424
||||||| || |||||||| || || ||||||||| ||||||| | | |||||
Sbjct 443 CTTTCTTTTCAACATCTAAGTGGAAGCTATTGGTGTAATAGCCTTTGTCGGTCACACCTG 384
Query 125425 TAATAACACCGTATTTCTCTTGG--TCGAGACGACAGAAACGATCACATAGCGATTCACT 125482
| ||| || | | ||| || || | || ||||| |||| ||||||
Sbjct 383 CCACAACGCCAAACT--GGGTGGTATCTAGCTGGCAAAAACGGCTGCATAAGTTTTCACT 326
Query 125483 TGGTGTACTGTACAGACTGAAACCGTAGCCCGTCAGTTCTTTCCA 125527
||| |||||||| | ||| || || || || || || ||||||
Sbjct 325 TGGGGTACTGTATAAACTAAAGCCATAACCTGTTTCTTGTTTCCA 281
>seq450559
Length=633
Score = 89.7 bits (98), Expect = 8e-13
Identities = 142/199 (71%), Gaps = 10/199 (5%)
Strand=Plus/Minus
Query 126435 GCTAGGACTTCGTCGATTCTATTGATCGTGTTACCGCCGTAGATATGGCTACTTACTTGC 126494
|||| ||||||||||| | || |||||| |||| || || |||||||| ||| ||
Sbjct 207 GCTAACACTTCGTCGATACGGTTAATCGTGGTACCACCATAAATATGGCTCGCTACCTGA 148
Query 126495 TGAATAATCTGAG---TTACAACAGTGGCAGCAGTGCTAATACTGTTTGGTTCTTCGATT 126551
|||||| || | | ||| ||||||||| || || || || || ||| |||
Sbjct 147 GCAATAATTTGCGCCGTAACAGCAGTGGCAGT--TGATA-TAGACTTAGGCGGTTCTATT 91
Query 126552 TCAGCATTACCCATTTTGAAGCC--GCCTTCAAACATGCCTTTGATATCAATAAGCATAC 126609
||||||||||||||||| || || | || |||||||| | |||||| ||||| |
Sbjct 90 TCAGCATTACCCATTTTAAAACCATGAGTT--AACATGCCGGCCAAATCAATTAGCATGC 33
Query 126610 AGTTGAATTGCGGGAATAA 126628
|||| || |||||| ||
Sbjct 32 AGTTAAACATCGGGAAAAA 14
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 788539611196160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |