Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_028840.1 Length=111751 Score E Sequences producing significant alignments: (Bits) Value seq426744 192 4e-44 seq507483 178 9e-40 seq506238 134 1e-26 seq450559 104 2e-17 seq351952 100 2e-16 seq466100 91.5 1e-13 seq519962 86.0 4e-12 >seq426744 Length=341 Score = 192 bits (212), Expect = 4e-44 Identities = 233/313 (74%), Gaps = 6/313 (2%) Strand=Plus/Minus Query 32224 GAAGATGAAGAATGGCAGGATGTTGCACAGGTTGGTAATGATG-CT-GTTAAAT-TGCAA 32280 |||||||||||||||||||||||| || |||||| ||| || |||||| | ||| Sbjct 341 GAAGATGAAGAATGGCAGGATGTTAACCAAGTTGGTGCGGATAACTCGTTAAAACTTCAA 282 Query 32281 GGTCAGGTTGGTCGCATTTATGGCCTGCCGGTTGTAGTTTCCGAATACTTCCCAGCTAAA 32340 || || |||||||| || || || || | ||| ||||||| | ||||||||||||||| Sbjct 281 GGACAAGTTGGTCGTATCTACGGTCTAGCAGTTCTAGTTTCTAACTACTTCCCAGCTAAA 222 Query 32341 GCTACCTCTGCAGAGTTCGCAGTTATTGTTTATAAAGATAACTTCGTAATGCCGCGCCAG 32400 ||| | | |||| ||| ||| ||||| || |||||||| | || || || Sbjct 221 GCTGTCAGTTCAGAATTCTGTACTATCGTTTACCGTGAGAACTTCGTTGTTCCTCGTCAA 162 Query 32401 CGTGCTGTTACTGTTGAACGTGAGCGCCAAGCTGGTAAACAGCGTGATGCGTACTACGTT 32460 ||| || |||| || ||||||||||| ||||||||||| || |||||||| |||||||| Sbjct 161 CGTACTATTACAGTAGAACGTGAGCGTCAAGCTGGTAAGCAACGTGATGCATACTACGTA 102 Query 32461 ACTCAGCGTGTTAACCTGCAACGTTACTTTGAA---AATGGCGTTGTATCTGGTGCTTAC 32517 ||||| ||| ||||||| |||||| ||| | || || | || ||||| | ||| Sbjct 101 ACTCAACGTCTTAACCTACAACGTATGATTGCAGGTAAAGGTATCGTTACTGGTACATAC 42 Query 32518 GCTGCATCTTAAT 32530 || ||| | |||| Sbjct 41 GCAGCAGCGTAAT 29 >seq507483 Length=1083 Score = 178 bits (196), Expect = 9e-40 Identities = 571/864 (66%), Gaps = 43/864 (5%) Strand=Plus/Minus Query 60108 ATCAGAAGAAGCAGACTGAATGATTGCGTTAAATCCAGAACG-AATTTCTTCACCCTGAA 60166 |||||| || || |||||||| ||||| || || ||||| || |||||||| || Sbjct 1070 ATCAGATGATGCCCCTTGAATGATAGCGTTGAAGCCTGAACGTAAGCTCTTCACC---AA 1014 Query 60167 CAC-CACGGTCTTCG--GAGTGGATATTATGCAGACGACGTTTACGACCAAAGTGACTGT 60223 || | | | || ||| |||||||| | || | ||||||||| || ||||| || | Sbjct 1013 CAGTCTCTCTAGACGCTGAGCGGATATTACGTAGTCTACGTTTACGTCCGAAGTGGCTAT 954 Query 60224 AGATAAATCCATGATTCTTGATCTGATCATGGCACTTATCAATCCAACGCTTAAGCTGCG 60283 | ||||| ||||| | ||||| |||||| || ||||||||||| || || | | Sbjct 953 AAATAAACCCATGCTGTAGAATCTGCTCATGGGACGCGTCAATCCAACGTTTCAGGTCAG 894 Query 60284 GAAACTGACTGAAGTAAGTTTCAATGTACTCTTTAGC---ATCTGCAACAGTACACTCTA 60340 | || |||| |||||| |||||||| |||||||| ||| | || || | Sbjct 893 GGAAACGACTAAAGTAAACATCAATGTAATCTTTAGCTGTTTCTTTATCAATA---GGTT 837 Query 60341 CAAACGGTTCGCCTGTCTTAGCAGCCTGTTCCAGAAGAGCTTCGTTAACAGAATGAGCTA 60400 | | || || ||||| || || || | || | || |||| ||| | |||| Sbjct 836 CGTAAGGGCAACCCGTCTTTACATGTTGCTCAAATAGCGACTCATTAATAGATTCTGCTA 777 Query 60401 CTTTAGCCGGGCCAGAACCGTACAAAATACCGAAGGTAATTGCCTTAGCAGCCTGACGCA 60460 | ||||| || ||| |||| | | ||||||||| | ||| || |||| ||||||||| | Sbjct 776 CCTTAGCTGGTCCACTACCGAATAGAATACCGAATGAAATAGCTTTAGAAGCCTGACGTA 717 Query 60461 GAGCTGGGAATA-ACTTTTTAACATCACGAGGCTCG-CATTGGAGCTTAAATACCATGTG 60518 || ||||| | | |||||| ||| | ||| | || | |||| || |||||||| Sbjct 716 ATGCAGGGAACATAGCTTTTAA-TTCATG-CGCTAGACAGTTTGGCTTGAACACCATGTG 659 Query 60519 CGCGATGTTAGA---ATGGAAGTC--CGGGTACTTATCAGGTTCATTTCTCATGTTGAT- 60572 || | |||| |||||||| | | ||| | || | | ||| | | | Sbjct 658 TGCAA---TAGAGCTGTGGAAGTCGGCAGATAC--AATAGACTTGTCAGCCATATCGTTA 604 Query 60573 AAATACCTGTTGCATAT-TTCTATCACCAGATAGAACAGCAGCATAATAAACTTCCGCAG 60631 ||| || | || | | || |||| ||| || | || || | | |||||||| Sbjct 603 AAACACTTTCTGTAGGTCTTTTATCCCCACTAAGTGCTGCTGCTACCCACATTTCCGCAG 544 Query 60632 TTGTTAAGTCCCACGCGATTACACGATACCCTGGAGGAGCTACTACACAACCCTTGATAA 60691 || | ||| || | ||| | ||| || | ||||||||| | ||| ||||| | | Sbjct 543 TTTCCATATCCACGGCTACTACTCTATAGCCCGCAGGAGCTACAATACATCCCTTAACCA 484 Query 60692 TAGATTCATCACGAGGTAACTGCTGCAGGTTCAGTTTACCAGAAGAACTCAGACGACCAG 60751 ||| ||||||||||| | ||||| | ||| ||||| || || ||||| |||||||| | Sbjct 483 TAGCATCATCACGAGGAAGTTGCTGTAAGTTAAGTTTGCCTGATGAACTTAGACGACCCG 424 Query 60752 AAGTAGTCATGTGTTCGTGGAAACCAGTACG--AATGCAACCATCAGCATCAATGCTCAG 60809 |||| ||| |||||| | || || ||||| |||| |||||| |||||| | Sbjct 423 AAGTGGTCGTGTGTTGGCTAAACCCTGTACGTAAATG--ACCATCTCGGTCAATGTTGTC 366 Query 60810 AAGAATCTTCTCAACATAAGTAGAGATCAGCTTAGTCAGCTTACGAATCTCTAGCAGAGT 60869 | ||||| ||||||||| | | || || ||| |||||||| || || Sbjct 365 TAACATCTTAATTACATAAGTATTAAGTACTTTTGTTGCCTTGCGAATCTCCAGTAGTAA 306 Query 60870 CT----TAGC-AATTGGATGCTGCGTAGACAATTCGTTCAGAGCTTCTGCATCTGTAGAG 60924 || |||| || || | || | ||| || | || |||||||||| |||||| Sbjct 305 CTTGGGTAGCTCATGGGTTTCT-CCTAG----TTTTTCTAGTACTTCTGCATCAGTAGAG 251 Query 60925 TCTGCTCCAGTATCCGTCAATTTA 60948 ||| |||||| | || |||||| Sbjct 250 ATTGCACCAGTACCTGTAAATTTA 227 >seq506238 Length=275 Score = 134 bits (148), Expect = 1e-26 Identities = 134/172 (78%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 106575 GAAGGTGGTCAACACCTAAATGTCAATGTGTTAAGTCGTGATCAGCTTTTG--GATGCAC 106632 |||||||||||||| |||| || ||||||||| ||||||| | | || | ||||| Sbjct 221 GAAGGTGGTCAACATTTAAACGTGAATGTGTTACGTCGTGA--AACATTGGAAGATGCTG 164 Query 106633 AGAAACATCCTGAAAAATACCCTCAATTAACTATCCGTGTTTCAGGATACGCTGTACGTT 106692 ||||| ||||||||||| || ||||||||||| ||||| ||||| ||||| || |||| Sbjct 163 TTAAACACCCTGAAAAATATCCACAATTAACTATTCGTGTATCAGGTTACGCAGTGCGTT 104 Query 106693 TTAATGCACTGACGCGTGAACAACAGAACGACGTTATTAGTCGTACATTTAC 106744 |||| || | || | ||||||||| | ||||| | | ||||||||||| Sbjct 103 TTAACTCATTAACACCAGAACAACAGCAAGACGTATTAACACGTACATTTAC 52 >seq450559 Length=633 Score = 104 bits (114), Expect = 2e-17 Identities = 188/271 (69%), Gaps = 8/271 (3%) Strand=Plus/Minus Query 78704 CTTCTTGATGTCATAATTAACATCTCCTGGTTTCATATTTACACCATCACGAAGTACAAA 78763 ||| || || ||||||||| |||| | ||| ||| || ||||| || |||| Sbjct 562 CTTTTTAATATCATAATTAGCATCAGTCGCTTTATGATTCACGCCATCTTTAATGGCAAA 503 Query 78764 TACCAGTTTCGGGAAGATAGCTGTACGTTT---ATTGATACCTAAGCCATCCATGCGTAC 78820 |||| ||| || |||| ||||| ||| ||| ||||||| || |||| ||||| Sbjct 502 CACCAATTTTGGAAAGACTGCTGT---TTTGCGATTTTTACCTAAACCCGCCATACGTAC 446 Query 78821 TTTCAGTATTGCTTTCTGTACTAGACGTGCTTCCCAAGAAGTTCCTAGACCAAAACCAAA 78880 | | | || | || ||| | || ||| | ||||| || |||| |||||||||||| Sbjct 445 TGTTAACATCGATTGCTGAATTAAACGCGACTCCCACGACACGCCTAAACCAAAACCAAA 386 Query 78881 GGTAATAAATGGACTCTGACCATTAGAGTTGAACATGGTATTGATTTCATATTCTAAACC 78940 ||||| ||| || | || ||||||| | | || |||||| | ||||||||| | Sbjct 385 GGTAACAAACGGTGTTTGGCCATTAGCGGTATGCAAGGTATTCACTTCATATTCAAGTGA 326 Query 78941 CTGACAAGCGTCATAGAC-TTCTTTTTCAGT 78970 ||| | ||||||| ||| |||||||| || Sbjct 325 CTGGAATGCGTCAT-GACACTCTTTTTCGGT 296 >seq351952 Length=416 Score = 100 bits (110), Expect = 2e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 106572 ATTGAAGGTGGTCAACACCTAAATGTCAATGTGTTAAGTCGTGATCAGCTTTTGGATGCA 106631 |||||||||||||||||| |||| || ||||| | | ||||| | | ||||||||| Sbjct 206 ATTGAAGGTGGTCAACACTTAAACGTTAATGTAATGAACCGTGAAATGTTATTGGATGCA 147 Query 106632 CAGAAACATCCTGAAAAATACCCTCAATTAACTATCCGTGTTTCAGGATACGCTGTACGT 106691 | || |||| || || || || |||||||| || ||||| || || ||||| ||||| Sbjct 146 ATGGAAAATCCAGATAAGTATCCACAATTAACAATTCGTGTATCGGGTTACGCAGTACGA 87 Query 106692 TTTAATGCACTGACGCGTGAACAACAGAACGACGTTATTAGTCGTACATTTAC 106744 ||||| | | || |||||| || | || || || | ||||| ||||| Sbjct 86 TTTAACTCGTTAACTGCAGAACAAAAGCAAGATGTAATCACACGTACCTTTAC 34 >seq466100 Length=556 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/197 (71%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 31597 TTTGAAACGGAGCATGGTAAGGCCCATATTAAAGCTGTTAATACCTCTTCCTCTGTACAG 31656 |||||||| | ||||| | || || |||||||||| || | ||| | | | Sbjct 199 TTTGAAACCAAATATGGTGAAGCTCACCTTAAAGCTGTGAACGCAAGTTCAAGTATCGAA 140 Query 31657 GTTTCCAGTGAAAACTATGAAACTATTTTCTCTACCCGTATTCTTCGAGACCTGCAGAAA 31716 ||||| ||||| ||||| || |||||||||||| ||||| || || || |||||| Sbjct 139 GTTTCTAGTGAGAACTACGAGACTATTTTCTCTCAACGTATCCTACGTGATATGCAGA-- 82 Query 31717 GAGTTAGTAGTTG--GCGCAC-TGTTCGATGAACTGCCAATGTCCAGCAAAATCCTTACT 31773 ||||| | |||| | || | ||||| || || |||||| | || || || |||||| Sbjct 81 -AGTTAATGGTTGTAGGTAACTTATTCGAAGAGCTTCCAATGACTAGTAAGATTCTTACT 23 Query 31774 ATGCTGGTTGAGCCTGA 31790 ||| || ||||||| || Sbjct 22 ATGATGATTGAGCCAGA 6 >seq519962 Length=460 Score = 86.0 bits (94), Expect = 4e-12 Identities = 115/159 (72%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 60601 GATAGAACAGCAGCATAATAAACTTCCGCAGTTGTTAAGTCCCACGCGATTACACGATAC 60660 |||| || ||||| | |||||||| || |||||||| || || | || ||| Sbjct 3 GATAATACCGCAGCGAAGTAAACTTCAGCGGTTGTTAAATCGGCAGCTACTATCTTATAG 62 Query 60661 CCTGGAGGAGCTACTACACAACCCTTGAT-AATAGATTCATCACGAGGTAACTGCTGCAG 60719 ||||||||||| | |||||||| ||||| | | | | |||||| || | |||||||| Sbjct 63 CCTGGAGGAGCCATAACACAACCTTTGATGATTGGGGTTATCACGTGGCAGCTGCTGCAT 122 Query 60720 GTTCAGTTTACCAGAAGAACTCAGACGACCAGAAGTAGT 60758 ||| | |||| ||| ||||| ||||| |||||||| Sbjct 123 GTTGAACGTACCGGAACTACTCAATCGACCTGAAGTAGT 161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355188909702464