Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_028840.1
Length=111751
Score E
Sequences producing significant alignments: (Bits) Value
seq426744 192 4e-44
seq507483 178 9e-40
seq506238 134 1e-26
seq450559 104 2e-17
seq351952 100 2e-16
seq466100 91.5 1e-13
seq519962 86.0 4e-12
>seq426744
Length=341
Score = 192 bits (212), Expect = 4e-44
Identities = 233/313 (74%), Gaps = 6/313 (2%)
Strand=Plus/Minus
Query 32224 GAAGATGAAGAATGGCAGGATGTTGCACAGGTTGGTAATGATG-CT-GTTAAAT-TGCAA 32280
|||||||||||||||||||||||| || |||||| ||| || |||||| | |||
Sbjct 341 GAAGATGAAGAATGGCAGGATGTTAACCAAGTTGGTGCGGATAACTCGTTAAAACTTCAA 282
Query 32281 GGTCAGGTTGGTCGCATTTATGGCCTGCCGGTTGTAGTTTCCGAATACTTCCCAGCTAAA 32340
|| || |||||||| || || || || | ||| ||||||| | |||||||||||||||
Sbjct 281 GGACAAGTTGGTCGTATCTACGGTCTAGCAGTTCTAGTTTCTAACTACTTCCCAGCTAAA 222
Query 32341 GCTACCTCTGCAGAGTTCGCAGTTATTGTTTATAAAGATAACTTCGTAATGCCGCGCCAG 32400
||| | | |||| ||| ||| ||||| || |||||||| | || || ||
Sbjct 221 GCTGTCAGTTCAGAATTCTGTACTATCGTTTACCGTGAGAACTTCGTTGTTCCTCGTCAA 162
Query 32401 CGTGCTGTTACTGTTGAACGTGAGCGCCAAGCTGGTAAACAGCGTGATGCGTACTACGTT 32460
||| || |||| || ||||||||||| ||||||||||| || |||||||| ||||||||
Sbjct 161 CGTACTATTACAGTAGAACGTGAGCGTCAAGCTGGTAAGCAACGTGATGCATACTACGTA 102
Query 32461 ACTCAGCGTGTTAACCTGCAACGTTACTTTGAA---AATGGCGTTGTATCTGGTGCTTAC 32517
||||| ||| ||||||| |||||| ||| | || || | || ||||| | |||
Sbjct 101 ACTCAACGTCTTAACCTACAACGTATGATTGCAGGTAAAGGTATCGTTACTGGTACATAC 42
Query 32518 GCTGCATCTTAAT 32530
|| ||| | ||||
Sbjct 41 GCAGCAGCGTAAT 29
>seq507483
Length=1083
Score = 178 bits (196), Expect = 9e-40
Identities = 571/864 (66%), Gaps = 43/864 (5%)
Strand=Plus/Minus
Query 60108 ATCAGAAGAAGCAGACTGAATGATTGCGTTAAATCCAGAACG-AATTTCTTCACCCTGAA 60166
|||||| || || |||||||| ||||| || || ||||| || |||||||| ||
Sbjct 1070 ATCAGATGATGCCCCTTGAATGATAGCGTTGAAGCCTGAACGTAAGCTCTTCACC---AA 1014
Query 60167 CAC-CACGGTCTTCG--GAGTGGATATTATGCAGACGACGTTTACGACCAAAGTGACTGT 60223
|| | | | || ||| |||||||| | || | ||||||||| || ||||| || |
Sbjct 1013 CAGTCTCTCTAGACGCTGAGCGGATATTACGTAGTCTACGTTTACGTCCGAAGTGGCTAT 954
Query 60224 AGATAAATCCATGATTCTTGATCTGATCATGGCACTTATCAATCCAACGCTTAAGCTGCG 60283
| ||||| ||||| | ||||| |||||| || ||||||||||| || || | |
Sbjct 953 AAATAAACCCATGCTGTAGAATCTGCTCATGGGACGCGTCAATCCAACGTTTCAGGTCAG 894
Query 60284 GAAACTGACTGAAGTAAGTTTCAATGTACTCTTTAGC---ATCTGCAACAGTACACTCTA 60340
| || |||| |||||| |||||||| |||||||| ||| | || || |
Sbjct 893 GGAAACGACTAAAGTAAACATCAATGTAATCTTTAGCTGTTTCTTTATCAATA---GGTT 837
Query 60341 CAAACGGTTCGCCTGTCTTAGCAGCCTGTTCCAGAAGAGCTTCGTTAACAGAATGAGCTA 60400
| | || || ||||| || || || | || | || |||| ||| | ||||
Sbjct 836 CGTAAGGGCAACCCGTCTTTACATGTTGCTCAAATAGCGACTCATTAATAGATTCTGCTA 777
Query 60401 CTTTAGCCGGGCCAGAACCGTACAAAATACCGAAGGTAATTGCCTTAGCAGCCTGACGCA 60460
| ||||| || ||| |||| | | ||||||||| | ||| || |||| ||||||||| |
Sbjct 776 CCTTAGCTGGTCCACTACCGAATAGAATACCGAATGAAATAGCTTTAGAAGCCTGACGTA 717
Query 60461 GAGCTGGGAATA-ACTTTTTAACATCACGAGGCTCG-CATTGGAGCTTAAATACCATGTG 60518
|| ||||| | | |||||| ||| | ||| | || | |||| || ||||||||
Sbjct 716 ATGCAGGGAACATAGCTTTTAA-TTCATG-CGCTAGACAGTTTGGCTTGAACACCATGTG 659
Query 60519 CGCGATGTTAGA---ATGGAAGTC--CGGGTACTTATCAGGTTCATTTCTCATGTTGAT- 60572
|| | |||| |||||||| | | ||| | || | | ||| | | |
Sbjct 658 TGCAA---TAGAGCTGTGGAAGTCGGCAGATAC--AATAGACTTGTCAGCCATATCGTTA 604
Query 60573 AAATACCTGTTGCATAT-TTCTATCACCAGATAGAACAGCAGCATAATAAACTTCCGCAG 60631
||| || | || | | || |||| ||| || | || || | | ||||||||
Sbjct 603 AAACACTTTCTGTAGGTCTTTTATCCCCACTAAGTGCTGCTGCTACCCACATTTCCGCAG 544
Query 60632 TTGTTAAGTCCCACGCGATTACACGATACCCTGGAGGAGCTACTACACAACCCTTGATAA 60691
|| | ||| || | ||| | ||| || | ||||||||| | ||| ||||| | |
Sbjct 543 TTTCCATATCCACGGCTACTACTCTATAGCCCGCAGGAGCTACAATACATCCCTTAACCA 484
Query 60692 TAGATTCATCACGAGGTAACTGCTGCAGGTTCAGTTTACCAGAAGAACTCAGACGACCAG 60751
||| ||||||||||| | ||||| | ||| ||||| || || ||||| |||||||| |
Sbjct 483 TAGCATCATCACGAGGAAGTTGCTGTAAGTTAAGTTTGCCTGATGAACTTAGACGACCCG 424
Query 60752 AAGTAGTCATGTGTTCGTGGAAACCAGTACG--AATGCAACCATCAGCATCAATGCTCAG 60809
|||| ||| |||||| | || || ||||| |||| |||||| |||||| |
Sbjct 423 AAGTGGTCGTGTGTTGGCTAAACCCTGTACGTAAATG--ACCATCTCGGTCAATGTTGTC 366
Query 60810 AAGAATCTTCTCAACATAAGTAGAGATCAGCTTAGTCAGCTTACGAATCTCTAGCAGAGT 60869
| ||||| ||||||||| | | || || ||| |||||||| || ||
Sbjct 365 TAACATCTTAATTACATAAGTATTAAGTACTTTTGTTGCCTTGCGAATCTCCAGTAGTAA 306
Query 60870 CT----TAGC-AATTGGATGCTGCGTAGACAATTCGTTCAGAGCTTCTGCATCTGTAGAG 60924
|| |||| || || | || | ||| || | || |||||||||| ||||||
Sbjct 305 CTTGGGTAGCTCATGGGTTTCT-CCTAG----TTTTTCTAGTACTTCTGCATCAGTAGAG 251
Query 60925 TCTGCTCCAGTATCCGTCAATTTA 60948
||| |||||| | || ||||||
Sbjct 250 ATTGCACCAGTACCTGTAAATTTA 227
>seq506238
Length=275
Score = 134 bits (148), Expect = 1e-26
Identities = 134/172 (78%), Gaps = 4/172 (2%)
Strand=Plus/Minus
Query 106575 GAAGGTGGTCAACACCTAAATGTCAATGTGTTAAGTCGTGATCAGCTTTTG--GATGCAC 106632
|||||||||||||| |||| || ||||||||| ||||||| | | || | |||||
Sbjct 221 GAAGGTGGTCAACATTTAAACGTGAATGTGTTACGTCGTGA--AACATTGGAAGATGCTG 164
Query 106633 AGAAACATCCTGAAAAATACCCTCAATTAACTATCCGTGTTTCAGGATACGCTGTACGTT 106692
||||| ||||||||||| || ||||||||||| ||||| ||||| ||||| || ||||
Sbjct 163 TTAAACACCCTGAAAAATATCCACAATTAACTATTCGTGTATCAGGTTACGCAGTGCGTT 104
Query 106693 TTAATGCACTGACGCGTGAACAACAGAACGACGTTATTAGTCGTACATTTAC 106744
|||| || | || | ||||||||| | ||||| | | |||||||||||
Sbjct 103 TTAACTCATTAACACCAGAACAACAGCAAGACGTATTAACACGTACATTTAC 52
>seq450559
Length=633
Score = 104 bits (114), Expect = 2e-17
Identities = 188/271 (69%), Gaps = 8/271 (3%)
Strand=Plus/Minus
Query 78704 CTTCTTGATGTCATAATTAACATCTCCTGGTTTCATATTTACACCATCACGAAGTACAAA 78763
||| || || ||||||||| |||| | ||| ||| || ||||| || ||||
Sbjct 562 CTTTTTAATATCATAATTAGCATCAGTCGCTTTATGATTCACGCCATCTTTAATGGCAAA 503
Query 78764 TACCAGTTTCGGGAAGATAGCTGTACGTTT---ATTGATACCTAAGCCATCCATGCGTAC 78820
|||| ||| || |||| ||||| ||| ||| ||||||| || |||| |||||
Sbjct 502 CACCAATTTTGGAAAGACTGCTGT---TTTGCGATTTTTACCTAAACCCGCCATACGTAC 446
Query 78821 TTTCAGTATTGCTTTCTGTACTAGACGTGCTTCCCAAGAAGTTCCTAGACCAAAACCAAA 78880
| | | || | || ||| | || ||| | ||||| || |||| ||||||||||||
Sbjct 445 TGTTAACATCGATTGCTGAATTAAACGCGACTCCCACGACACGCCTAAACCAAAACCAAA 386
Query 78881 GGTAATAAATGGACTCTGACCATTAGAGTTGAACATGGTATTGATTTCATATTCTAAACC 78940
||||| ||| || | || ||||||| | | || |||||| | ||||||||| |
Sbjct 385 GGTAACAAACGGTGTTTGGCCATTAGCGGTATGCAAGGTATTCACTTCATATTCAAGTGA 326
Query 78941 CTGACAAGCGTCATAGAC-TTCTTTTTCAGT 78970
||| | ||||||| ||| |||||||| ||
Sbjct 325 CTGGAATGCGTCAT-GACACTCTTTTTCGGT 296
>seq351952
Length=416
Score = 100 bits (110), Expect = 2e-16
Identities = 126/173 (73%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 106572 ATTGAAGGTGGTCAACACCTAAATGTCAATGTGTTAAGTCGTGATCAGCTTTTGGATGCA 106631
|||||||||||||||||| |||| || ||||| | | ||||| | | |||||||||
Sbjct 206 ATTGAAGGTGGTCAACACTTAAACGTTAATGTAATGAACCGTGAAATGTTATTGGATGCA 147
Query 106632 CAGAAACATCCTGAAAAATACCCTCAATTAACTATCCGTGTTTCAGGATACGCTGTACGT 106691
| || |||| || || || || |||||||| || ||||| || || ||||| |||||
Sbjct 146 ATGGAAAATCCAGATAAGTATCCACAATTAACAATTCGTGTATCGGGTTACGCAGTACGA 87
Query 106692 TTTAATGCACTGACGCGTGAACAACAGAACGACGTTATTAGTCGTACATTTAC 106744
||||| | | || |||||| || | || || || | ||||| |||||
Sbjct 86 TTTAACTCGTTAACTGCAGAACAAAAGCAAGATGTAATCACACGTACCTTTAC 34
>seq466100
Length=556
Score = 91.5 bits (100), Expect = 1e-13
Identities = 140/197 (71%), Gaps = 6/197 (3%)
Strand=Plus/Minus
Query 31597 TTTGAAACGGAGCATGGTAAGGCCCATATTAAAGCTGTTAATACCTCTTCCTCTGTACAG 31656
|||||||| | ||||| | || || |||||||||| || | ||| | | |
Sbjct 199 TTTGAAACCAAATATGGTGAAGCTCACCTTAAAGCTGTGAACGCAAGTTCAAGTATCGAA 140
Query 31657 GTTTCCAGTGAAAACTATGAAACTATTTTCTCTACCCGTATTCTTCGAGACCTGCAGAAA 31716
||||| ||||| ||||| || |||||||||||| ||||| || || || ||||||
Sbjct 139 GTTTCTAGTGAGAACTACGAGACTATTTTCTCTCAACGTATCCTACGTGATATGCAGA-- 82
Query 31717 GAGTTAGTAGTTG--GCGCAC-TGTTCGATGAACTGCCAATGTCCAGCAAAATCCTTACT 31773
||||| | |||| | || | ||||| || || |||||| | || || || ||||||
Sbjct 81 -AGTTAATGGTTGTAGGTAACTTATTCGAAGAGCTTCCAATGACTAGTAAGATTCTTACT 23
Query 31774 ATGCTGGTTGAGCCTGA 31790
||| || ||||||| ||
Sbjct 22 ATGATGATTGAGCCAGA 6
>seq519962
Length=460
Score = 86.0 bits (94), Expect = 4e-12
Identities = 115/159 (72%), Gaps = 1/159 (1%)
Strand=Plus/Plus
Query 60601 GATAGAACAGCAGCATAATAAACTTCCGCAGTTGTTAAGTCCCACGCGATTACACGATAC 60660
|||| || ||||| | |||||||| || |||||||| || || | || |||
Sbjct 3 GATAATACCGCAGCGAAGTAAACTTCAGCGGTTGTTAAATCGGCAGCTACTATCTTATAG 62
Query 60661 CCTGGAGGAGCTACTACACAACCCTTGAT-AATAGATTCATCACGAGGTAACTGCTGCAG 60719
||||||||||| | |||||||| ||||| | | | | |||||| || | ||||||||
Sbjct 63 CCTGGAGGAGCCATAACACAACCTTTGATGATTGGGGTTATCACGTGGCAGCTGCTGCAT 122
Query 60720 GTTCAGTTTACCAGAAGAACTCAGACGACCAGAAGTAGT 60758
||| | |||| ||| ||||| ||||| ||||||||
Sbjct 123 GTTGAACGTACCGGAACTACTCAATCGACCTGAAGTAGT 161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355188909702464
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |