Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_028885.1 Length=72378 Score E Sequences producing significant alignments: (Bits) Value seq486019 327 5e-85 seq488807 210 1e-49 seq255804 176 2e-39 seq513438 113 2e-20 seq523594 96.9 2e-15 seq469180 82.4 4e-11 >seq486019 Length=823 Score = 327 bits (362), Expect = 5e-85 Identities = 571/824 (69%), Gaps = 5/824 (1%) Strand=Plus/Minus Query 1088 TGTACATTGCACTGTACGGTGAGCTTCCTGGTTTCGGTAAGGTAGACCTTGCTCTGTACG 1147 ||||||| || |||||||| | || || || ||||| || | | |||||||| | Sbjct 821 TGTACATAGCTTGTTACGGTGACATCCCCGGGTTTGGTAAAGTTCCCTTGGCTCTGTATG 762 Query 1148 TGTCGGACTCCATCGACAACGGTGTGAAGAACATGCGTAAGAACCTGGAGTTCCGCTGGG 1207 | || || || || |||||||| |||||||||||||||||| |||||||||| |||| Sbjct 761 TTTCAGATAGTATAGAGAACGGTGTTAAGAACATGCGTAAGAACTTGGAGTTCCGTTGGG 702 Query 1208 AGAACTCCGAGTTCCTGAAGAAATACATCCCCCAAACCAACTTCACTGACATCCGCTGGA 1267 | ||||| || || | || || | || | || | |||||||| || |||||| Sbjct 701 AAAACTCAGAATTTTTACTTAAGTATGTACCT-ACACTAGGTTCACTGATATACGCTGGG 643 Query 1268 AGTTCACGAACCTGGACGGGAAGGTCTTCATCGTCAAGGGCTACGGTGCCAAGACTGGTG 1327 | || | ||| | || || || || ||||| || || || || || ||||| |||| Sbjct 642 AATTTAATAACATTGATGGTAACCGATTTATCGTAAAAGGTTATGGCGCAAAGACCGGTG 583 Query 1328 TCCGTGGTGCGAAGGAGATGGGTAAGCGACCGCAGCTTGCGGTACTGGATGACTTGGTTT 1387 | |||||||| || ||||||||| || || |||||| ||||| |||||||| | | Sbjct 582 TACGTGGTGCTAAAGAGATGGGTGTTCGTCCAGTGCTTGCTGTACTAGATGACTTAATAT 523 Query 1388 CGGACGAAGATGCTCGCTCGCCAACCGTCATCGCAGCCATCGAAGACACGGTGTACAAGG 1447 |||| |||||||| | || | || || || | || | ||||| || |||||||||| Sbjct 522 CGGATGAAGATGCGAGGTCAGCTACAGTTATTTCTGCTGTAGAAGATACAGTGTACAAGG 463 Query 1448 CAGTGGACTACGCACTGCACCCGAAGAAGAAC-ATGATCATCTGGTCGGGTACACCGTTC 1506 | | ||||||||| | |||| || | | | | | | |||||||| ||||| || || Sbjct 462 CTATTGACTACGCATTAGACCC-AATACGCTCTAAGGTAATCTGGTCAGGTACTCCCTTT 404 Query 1507 AACGCGAAGGATCCACTGTACAAAGCAGTGGAGTCTGGTGCCTGGAAGGTCAACGTCTAC 1566 ||| || |||||| | ||||||||||| ||||||||||| ||| || ||||| ||| Sbjct 403 AACTCGCGTGATCCATTATACAAAGCAGTTGAGTCTGGTGCTTGGGCAGTTAACGTGTAC 344 Query 1567 CCTGTGTGCGAGAGATTCCCGTGCTCGCGGGAAGAGTTCAGGGGTGCATGGGCTGACCGA 1626 |||||||| | | || || || | |||| || || ||||| ||| |||| || Sbjct 343 CCTGTGTGTGCTAATTTTCCTTGTGAAGAGAAAGACTTTAGAGGTGCGTGGCCTGATCGT 284 Query 1627 TTCACCTACGACTTCGTGTTGCAGAAGTACACCCTGGCCAAGAAGGCAGGGAAGATCGAG 1686 ||| | || | || || || | || ||||| || |||||||| ||| | || Sbjct 283 TTCTCATATCAATTTGTTTTAGACAAATACACTAAAGCTTTTAAGGCAGGTAAGGTGGAT 224 Query 1687 ACGTTCAACCAAGAGCTTATGCTCCAGATCATGTCCGACGAAGACCGACTCATCCAGGAT 1746 || || ||||||||||||||| | | |||||||| ||||| || || || || || ||| Sbjct 223 ACATTTAACCAAGAGCTTATGTTACGAATCATGTCAGACGAGGATCGTCTAATTCAAGAT 164 Query 1747 GGTGAGGTGGCTTGGTACATGC-GGCGCAACGTACTGGACAATAAGAAGCGGTACAACTT 1805 |||| | ||||||| | | || ||| | | ||||| || |||||| Sbjct 163 TGTGATATTAACTGGTACAGACATGAGC-TTGTATTAAAAAATAAAGGTAAGTTCAACTT 105 Query 1806 CTACATCACCACTGACTTCGCTACCTCTGCGAAGAAGGCGAGTGACTTCAGTGTGATCAG 1865 ||| || || |||||||| || || || |||| | || |||||||| | Sbjct 104 CTATATAACAACTGACTTTGCAACTAGTGAAAAGACCTCTGCGGATTTCAGTGTTTTATC 45 Query 1866 TGTCTGGGCTTACTCCCACAACGAAGACTGGCTGTGGGTGGATG 1909 ||| ||||||||| |||| | || ||| | ||||| |||| Sbjct 44 TGTGTGGGCTTACAATAACAATGGTGATTGGTTCTGGGTTGATG 1 >seq488807 Length=774 Score = 210 bits (232), Expect = 1e-49 Identities = 369/530 (70%), Gaps = 12/530 (2%) Strand=Plus/Plus Query 1435 ACGGTGTACAAGGCAGTGGACTACGCACTGCACCCGAAGAAGAACATGATCATCTGGTCG 1494 || || || || |||||||| |||||| |||| || | ||| | || |||||||| Sbjct 1 ACAGTTTATAAAGCAGTGGATTACGCATTGCATCCTACCAAGTCTAAAATAATCTGGTCA 60 Query 1495 GGTACACCGTTCAACGCGAAGGATCCACTGTACAAAGCAGTGGAGTCTGGTGCCTGGAAG 1554 ||||| ||||| ||||| || ||| ||||||||||||| ||||| || || ||| | Sbjct 61 GGTACTCCGTTTAACGCCCGTGACCCATTGTACAAAGCAGTTGAGTCAGGAGCTTGGTAC 120 Query 1555 GTCAACGTCTACCCTGTGTGCGAGAGATTCCCGTGCTCGCGGGAAGAGTTCAGGGGTGCA 1614 || || || ||||||||||| |||| ||| || || || | |||||||||| || || Sbjct 121 GTAAATGTGTACCCTGTGTGTGAGAAATTTCCTTGTACGAGAGAAGAGTTCAAAGGCTCA 180 Query 1615 TGGGCTGACCGATTCACCTACGACTTCGTGTTGCAGAAGTACACCCTGGCCAAGAAGGCA 1674 ||| |||| || ||||| || |||| || || || | |||||| || || ||| Sbjct 181 TGGCCTGATCGCTTCACGTATGACTATGTAATGAAGCAATACACCAAAGCTGTTAAAGCA 240 Query 1675 GGGAAGATCGAGACGTTCAACCAAGAGCTTATGCTCCAGATCATGTCCGACGAAGACCGA 1734 || ||| | || | || ||||||||| | ||||| || ||||| || |||||| || Sbjct 241 GGTAAGGTGGATTCTTTTAACCAAGAGTTGATGCTAAGAATTATGTCAGAAGAAGACAGA 300 Query 1735 CTCATCCAGGATGGTGAGGTGGCTTGGTACATGCGGCGCAACGTACTGGACAA----TAA 1790 | || | ||| ||||| | ||||||| || || || | ||| || || Sbjct 301 TTAATTAAAGATAGTGAGATTAATTGGTAC--GC-ACGTAATGCACTTCTTAAGAGTAAA 357 Query 1791 GAAGCGGTACAACTTCTACATCACCACTGACTTCGCTACCTCTGCGAAGAAGGCGAGTGA 1850 || || |||||||||||||||||| || || || || ||||||| || |||| || || Sbjct 358 GACGC-GTACAACTTCTACATCACTACGGATTTTGCAACCTCTGAAAAAGAGGCTAGCGA 416 Query 1851 CTTCAGTGTGATCAGTGTCTGG--GCTTACTCCCACAACGAAGACTGGCTGTGGGTGGAT 1908 ||| || || || ||| ||| ||||| | || | | | ||| | ||||| || Sbjct 417 CTTTAGCGTAATATCTGTATGGGCGCTTA-GCTCAGATGGTA-CGTGGTTCTGGGTAGAC 474 Query 1909 GGTATCTGTGAACGCCAGGACATGGGGGCGAACCTGGATGATCTGTTCAG 1958 ||||| || || | || |||||| | ||| | ||||| |||| || Sbjct 475 GGTATTTGCGAGCAACAAGACATGTCCGTAAACATTGATGACTTGTTTAG 524 >seq255804 Length=3791 Score = 176 bits (194), Expect = 2e-39 Identities = 685/1065 (64%), Gaps = 29/1065 (3%) Strand=Plus/Minus Query 910 TTTGCCTTGCAGTTCGTTGAC-TTCATCAAGATGGTCAACGGTAACGAAGGGGAAGAGAA 968 ||||| ||| ||||| ||||| || || ||| | || || ||| || || || ||||| Sbjct 2983 TTTGCATTGGAGTTC-TTGACGTTTATTAAGCTAGTTAATGGTGGTGAGGGTGAGGAGAA 2925 Query 969 CAAGACACCAGTGCTTCACCTACGGATGCTTGACCAGATTGGCTCTGGCC--AGACACGG 1026 | |||| || ||||| || |||| | || || | | ||| ||| ||| Sbjct 2924 CGTATCACCTGTTATTCACTTAAAGATGTTAGATAAGTTAGATGGTGGATTAAGAAACGT 2865 Query 1027 ATCGCCAACATGGTCTTCCGTGGTGCAGCCAAGACTACCGTGATGGGTGAGTACCTGTTC 1086 | || |||||| |||| |||||||||| |||||||| | |||| ||||||||| || Sbjct 2864 A--GCTAACATGATCTTTCGTGGTGCAGGTAAGACTACACTAATGGCTGAGTACCTTATC 2807 Query 1087 CTGTACATT-GCACTGTACGGTGAGCTTCCTGGTTTCGGTAAGGTAGACCTTGCTCTGTA 1145 | || || || ||||||| | || || |||||||| | | | ||||| Sbjct 2806 TTATATCTTAGCGGTGTACGGCAGAATGCCGTCCTTTGGTAAGGTTAAATTAGTGCTGTA 2747 Query 1146 CGTGTCGGACTCCATCGACAACGGTGTGAAGAACATGCGTAAGAACCTGGAGTTCCGCTG 1205 || || || || || |||||| | ||| ||| | |||||| | |||| || || Sbjct 2746 TGTATCAGATAGTATTGATAACGGTATTAAGTCAATGAGAAAGAACTTAGAGTCTCGTTG 2687 Query 1206 GGAGAACTCCGAGTTCCTGAAGAAATACATCCCCCAAACC------AACTTCACTGACAT 1259 ||||| |||||| | |||| || | || || || |||| || || Sbjct 2686 GGAGAGTAGTGAGTTCTTACAGAAGTATCTACCTAAAGAAGGATTAAAGCTCACAGATAT 2627 Query 1260 CCGCTGGAAGTTCACGAACCTGGACGGGAAGGTCTTCATCGTCAAGGGCTACGGTGCCAA 1319 | ||| |||| | ||| | | || | ||| | || ||||| || |||||||| Sbjct 2626 TAGGTGGGAGTTTAAGAATATTAATGGTACTAAATTCGTAGTAAAGGGGTATGGTGCCAA 2567 Query 1320 GACTGGTGTCCGTGGTGCGAAGGAGATGGGTAAGCGACCGCAGCTTGCGGTACTGGATGA 1379 ||| ||| | ||||||| |||||||||||||| || || ||| | || | || ||||| Sbjct 2566 GACAGGTATTCGTGGTGTGAAGGAGATGGGTACACGCCCACAGATGGCTATCCTAGATGA 2507 Query 1380 CTTGGTTTCGGACGAAGATGCTCGCTCGCCAACCGTCATCGCAGCCATCGAAGACACGGT 1439 ||| ||| | || || | || || || || || || ||| || ||||||| || Sbjct 2506 CTTAGTTAGTAATGATGACTCACGTTCACCTACAGTTATTCAAGCTATTAAAGACACAGT 2447 Query 1440 GTACAAGGCAGTGGACTACGCACTGCACCCGAAGAAGAACATGATCATCTGGTCGGGTAC 1499 |||| | | || ||||| ||||| |||||| | || || ||| ||||| Sbjct 2446 AGGTCAGGCTATTAAGTATGCACTTCACCCTAAGAAGTCTAAGACTATATGGCTTGGTAC 2387 Query 1500 ACCGTTCAACGCGAAGGATCCACTGTACAAAGCAGTGGAGTCTGGTGCCTGGAAGGTCAA 1559 || || || || || ||||| |||| |||| |||| |||||||| ||| | || | Sbjct 2386 TCCCTTTAATGCTAATGATCCTTTGTATGAAGCTATGGAATCTGGTGCATGGGATGTAAG 2327 Query 1560 CGTCTACCCTGTGTGCGAGAGATTCCCGTGCTCGCGGGAAGAGTTCAGGGGTGCATGGGC 1619 || || ||| | || |||| || || || | | |||||||| | || ||||||| Sbjct 2326 TGTATATCCTATATGTGAGAAGTTTCCTTGTACTAGAGAAGAGTTTAAAGGAGCATGGGA 2267 Query 1620 TGACCGATTCACCTACGACTTCGTGTTGCAG--AAGTACACCCTGGC-CAAG---AAGGC 1673 || || || || |||| ||| | || | |||| ||| | || |||| Sbjct 2266 GGATCGCTTTGATTATGACT--ATGTAGAAGCTATGTACCAAGAGGCACTAGCTCAAGGT 2209 Query 1674 AGGGAAGATCGAGACGTTCAACCAAGAGCTTATGCTCCAGATCATGTCCGACGAAGACCG 1733 | || || | ||| | |||||||||||||| || || ||||| || || || | Sbjct 2208 ATGGTGAATGG----TTTCTATCAAGAGCTTATGCTACAAATTATGTCTGATGAGGATAG 2153 Query 1734 ACTCATCCAGGATGGTGAGGTGGCTTGGTACATGCGGCGCAACGTACTGGACAATAAGAA 1793 | | | |||||||| | |||| | ||| | |||| |||||||| Sbjct 2152 ATTAGTAGTTGATGGTGATTTAAGATGGTTTACTTTAAAGAACCTGATGGATAATAAGAA 2093 Query 1794 GCGGTACAACTTCTACATCACCACTGACTTCGCTACCTCTGCGAAGAAGGCGAGTGACTT 1853 | || ||||| || || |||||||| ||||| || ||| | | |||||| Sbjct 2092 TAACTTTAATTTCTATATTACTACTGACTTTGCTACTAGTGAAAAGCAATCTGCTGACTT 2033 Query 1854 CAGTGTGATCAGTGTCTGGGC--TTACTCCCACAACGAAGACTGGCTGTGGGTGGATGGT 1911 || | || ||||| ||||| ||| | | || | | | | ||||| ||||| Sbjct 2032 TAGCTTTATTAGTGTTTGGGCTGTTAAT--AATAAAGGTAATTACTTTTGGGTAGATGGA 1975 Query 1912 ATCTGTGAACGCCAGGACATGGGGGCGAACCTGGATGATCTGTTC 1956 || ||| | | ||| ||||| |||| | |||||||||||| Sbjct 1974 ATATGTAAGAGACAGACCATGGATAAGAACATTGATGATCTGTTC 1930 >seq513438 Length=501 Score = 113 bits (124), Expect = 2e-20 Identities = 242/356 (68%), Gaps = 8/356 (2%) Strand=Plus/Plus Query 844 AAGTCTGTAGAGCAATGGCTTCGTGAAGTAGTCTATGGGGATGACTCTTCGTACATCCCC 903 ||| | |||||||||||| || || ||| |||| | | ||| || || || ||| Sbjct 150 AAGACGGTAGAGCAATGGATTAACGACGTAAACTATTCGTACGACGATTGCTATATACCC 209 Query 904 AGCATCTTTGCCTTGCAGTTCGTTGACTTCATCAAGATGGTCAACGGTAACGAAGGGGAA 963 || ||||| | |||||||| |||||| || ||||| ||||| || || ||| Sbjct 210 AGTGAGTTTGCAGTAGAGTTCGTTACCTTCATTAAAATGGTAAACGGCTCAGACGGTGAA 269 Query 964 GAGAACAAGACACCAGTGCTTCACCTACGGATGCTTGACCAGATTGGCTCTGGCCAGACA 1023 || ||||| || ||||| ||||||| | ||| | || ||| | | |||||||| | Sbjct 270 GAAAACAAAACGCCAGTAGTTCACCTTAGAATGTTGGATCAGGTAAG---TGGCCAGAAA 326 Query 1024 -CGGAT--CGCCAACAT-GGTCTTCCGTGGTGCAGCCAAGACTACCGTGATGGGTGAGTA 1079 | || | ||| | ||| | |||||| | |||||| | || | |||||||| Sbjct 327 GCCAATACCATAAACCTATGTCAT-CGTGGTTTGGGCAAGACAGCAGTATTTGGTGAGTA 385 Query 1080 CCTGTTCCTGTACATTGCACTGTACGGTGAGCTTCCTGGTTTCGGTAAGGTAGACCTTGC 1139 ||| |||||||| | | ||||||| | | || || |||||||| || | | || Sbjct 386 CCTATTCCTGTATTTAGGCGTGTACGGAGCAATCCCGGGATTCGGTAAAGTTCCCTTGGC 445 Query 1140 TCTGTACGTGTCGGACTCCATCGACAACGGTGTGAAGAACATGCGTAAGAACCTGG 1195 || ||||| || || ||| || || || || ||||| |||||||| ||| ||| Sbjct 446 GCTATACGTATCAGATAGCATTGAGAATGGCGTTAAGAATATGCGTAAAAACTTGG 501 >seq523594 Length=514 Score = 96.9 bits (106), Expect = 2e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 35386 GTGAATGGTTTGGTCGGTGGCTTCGGTGTCTACAACGATGGCCGGACTGTCGAAGCTGGC 35445 || ||||||||| | ||||| |||||||| ||||||||||| || ||||| ||||| || Sbjct 430 GTCAATGGTTTGATTGGTGGTTTCGGTGTGTACAACGATGGTCGCACTGTAGAAGCCGGT 489 Query 35446 TTCAACGTAGACCGCTTCTGGAT 35468 ||| |||| |||||||||||||| Sbjct 490 TTCGACGTGGACCGCTTCTGGAT 512 >seq469180 Length=838 Score = 82.4 bits (90), Expect = 4e-11 Identities = 255/391 (65%), Gaps = 3/391 (1%) Strand=Plus/Plus Query 5230 GGGTGAGAACTATGAGTTCAACCCAGGTGCAGACCCACGGGCTGCTGTGCACATGCACAC 5289 |||||| |||| |||| |||| |||| || ||| | || | ||||||| | Sbjct 16 GGGTGATGACTACGAGTACAACGGTGGTGTTGATCCAAGTAAAGCATTTTACATGCATAA 75 Query 5290 CTTCCCAGAGATCCCGCAGTCCGCTCA-GTACATGATCAACCTGCAACAAGCAGAAGCTG 5348 | || ||| | | ||||| |||| ||| ||| | | ||||||| ||||||| Sbjct 76 GTATCCTGAGCTTTCACAGTCAGCTCCTGTA-ATGCTTAGTATGCAACACAATGAAGCTG 134 Query 5349 AATCCATGACTGGCGTGAAGGCTTTCAACGCTGGCATCTCTGGTGCTGCACTCGGTGACA 5408 |||| | || || | || || || | |||| | ||||| |||| | ||||| | Sbjct 135 AATCATTAACAGGTATCAAAGCATTTAGTACTGGTGTAAGTGGTGATGCATTTGGTGATA 194 Query 5409 CCGCTACTGCTGTACGTGGTGCATTGGATGCTGCATCGAAGCGTGAGCTTGGAATCCTTC 5468 | | | | || ||||||||| |||| |||| || || |||||| | || ||| | | Sbjct 195 CTGTTGGTAATGCTCGTGGTGCAATGGACTCTGCTTCTAAACGTGAGATAGGTATCTTAC 254 Query 5469 GCCGTCTCTCGGCTGGCATCATCGAGATCGGGCGGAAGATCATAGCCATGAACGCTGAGT 5528 | | | || ||||| ||||| || || ||||| ||| |||||||| || Sbjct 255 GTAG-ATAGGTGCAGGCATTGAAGAGATTGGCCGTAAGATTATAAGTATGAACGCCTTGT 313 Query 5529 TCCTGGACGATGTGGAAGTGGTACGGATCACGAATGAGCACTTCGTGGACATCCGCAGGG 5588 || | || || | ||||| |||| || || | || | ||||| || | | Sbjct 314 TCTTAGAAGAAGAAGAAGTTATACGAATTACTGACGAAGAGTTCGTTACTATTAAACGTG 373 Query 5589 ATGACCTTGCTGGCAACTTCGATTTGAAGCT 5619 ||||||||||||| ||||| ||| | ||||| Sbjct 374 ATGACCTTGCTGGTAACTTTGATGTTAAGCT 404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230002242722058